View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8135_low_1 (Length: 916)

Name: NF8135_low_1
Description: NF8135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8135_low_1
NF8135_low_1
[»] chr5 (2 HSPs)
chr5 (412-897)||(4702909-4703391)
chr5 (324-389)||(4702844-4702909)
[»] chr7 (2 HSPs)
chr7 (11-319)||(6485153-6485460)
chr7 (9-39)||(21592624-21592654)
[»] chr8 (1 HSPs)
chr8 (9-47)||(22739939-22739977)
[»] chr1 (1 HSPs)
chr1 (707-754)||(44852766-44852813)
[»] chr6 (2 HSPs)
chr6 (705-758)||(11594740-11594793)
chr6 (457-535)||(11594519-11594597)
[»] chr3 (1 HSPs)
chr3 (8-39)||(42369934-42369965)
[»] scaffold1121 (1 HSPs)
scaffold1121 (8-38)||(379-409)
[»] chr4 (1 HSPs)
chr4 (8-38)||(10491357-10491387)


Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 412 - 897
Target Start/End: Original strand, 4702909 - 4703391
Alignment:
Q  412 atgcacttgacaattttatgctactttgccatgtgtttaacttcacagaaaaggactgggaagatatcaagtttggggtagacaatgaagttgacttcta 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4702909 atgcacttgacaattttatgctactttgccatgtgtttaacttcacagaaaaggactgggaagatatcaagtttggggtagacaatgaagttgacttcta 4703008  T
Q  512 tgctgtatcatttgtcaaggatgctagagtggtttatgagttaaaagaatatctcaaaagtaattatgtttttgctatctaatttccattttatgcttgt 611  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4703009 tgctgtttcatttgttaaggatgctagagtggtttatgagttaaaagaatatctcaaaagtaattatgtttttgctatctaatttccattttatgcttgt 4703108  T
Q  612 ttatcccattttgtgaatctggtatgcgcttttcttatttcttgaggtattgattcttttaagaactaattttatatcttttccgtaggacacaatgctg 711  Q
    ||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4703109 ttatcccgttgtgtgaatctggtatgcgcttttcttatttcttgaggcattgattcttttaagaactaattttatatcttttccgtaggacacaatgctg 4703208  T
Q  712 atatacatgtgattgtaaaaattgaaagtgcagattccataccaaatcttcattccatactttcagcttcagatggggttagttcctcattgttcaaatt 811  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4703209 atatacatgtgattgtaaaaattgaaagtgcagattccataccaaatcttcattccatactttcagcttcagatggggttagttcctcattgttcaaatt 4703308  T
Q  812 atatattgtagtatgcatattttaaccccttttattaaacatataaaaactggagttaattttagctgttctatacatcagtgtgc 897  Q
    |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4703309 atatatt---gtatgcatattttaaccccttttattaaacatataaaaactggagttaattttagctgttctatacatcagtgtgc 4703391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 324 - 389
Target Start/End: Original strand, 4702844 - 4702909
Alignment:
Q  324 ataattctattgtattttccgttgattgattgcagatagacaataggtttcagctacttaattgta 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4702844 ataattctattgtattttccgttgattgattgcagatagacaataggtttcagctacttaattgta 4702909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 319
Target Start/End: Complemental strand, 6485460 - 6485153
Alignment:
Q  11 atcatcaaaacacaaacctataactaaaaacaacttctatctttagtttaaaattgtgaagattgggtttttagtcaaaatcaagtgggaataacttttc 110  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6485460 atcatcaaaacacaaacctataactaaaaacaacttc-atctttagtttaaaattgtgaagattgggtttttagtcaaaatcaagtgggaataacttttc 6485362  T
Q  111 cttatgtacaaacacatttgcttgctttaaaggtgatccaactgtatacttacggtgatttaatggatacgataatttaaccctaaatatacttacggtg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6485361 cttatgtacaaacacatttgcttgctttaaaggtgatccaactgtatacttacggtgatttaatggatacaataatttaaccctaaatatacttacggtg 6485262  T
Q  211 atttaaaggatacgataatttaaccctaaaaacaaggtccaactatatattgagggttaaattgaattttaataggacttgctttgattacaaactaacc 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6485261 atttaaaggatacgataatttaaccctaaaaacaaggtccaactatatatttagggttaaattgaattttaataggacttgctttgattacaaactaacc 6485162  T
Q  311 agtaactgg 319  Q
    |||||||||    
T  6485161 agtaactgg 6485153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 39
Target Start/End: Original strand, 21592624 - 21592654
Alignment:
Q  9 acatcatcaaaacacaaacctataactaaaa 39  Q
    |||||||||||||||||||||||||||||||    
T  21592624 acatcatcaaaacacaaacctataactaaaa 21592654  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 22739977 - 22739939
Alignment:
Q  9 acatcatcaaaacacaaacctataactaaaaacaacttc 47  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22739977 acatcatcaaaacacaaacctataactaaaaacaacttc 22739939  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 707 - 754
Target Start/End: Complemental strand, 44852813 - 44852766
Alignment:
Q  707 tgctgatatacatgtgattgtaaaaattgaaagtgcagattccatacc 754  Q
    ||||||||||||||| ||||||||||||||||||||||| || |||||    
T  44852813 tgctgatatacatgtaattgtaaaaattgaaagtgcagactctatacc 44852766  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 705 - 758
Target Start/End: Original strand, 11594740 - 11594793
Alignment:
Q  705 aatgctgatatacatgtgattgtaaaaattgaaagtgcagattccataccaaat 758  Q
    ||||||||||||||||| || || |||||||||||||| ||||| |||||||||    
T  11594740 aatgctgatatacatgtcatcgtgaaaattgaaagtgcggattctataccaaat 11594793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 457 - 535
Target Start/End: Original strand, 11594519 - 11594597
Alignment:
Q  457 cagaaaaggactgggaagatatcaagtttggggtagacaatgaagttgacttctatgctgtatcatttgtcaaggatgc 535  Q
    |||| ||||||||||| |||||||| ||||| || || ||  ||||||| ||||||||||| || ||||| ||||||||    
T  11594519 cagagaaggactgggatgatatcaaatttggagtggataacaaagttgatttctatgctgtttcctttgttaaggatgc 11594597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 42369934 - 42369965
Alignment:
Q  8 gacatcatcaaaacacaaacctataactaaaa 39  Q
    ||||||||||||||||||||||||||||||||    
T  42369934 gacatcatcaaaacacaaacctataactaaaa 42369965  T

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Target: scaffold1121 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold1121
Description:

Target: scaffold1121; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 38
Target Start/End: Complemental strand, 409 - 379
Alignment:
Q  8 gacatcatcaaaacacaaacctataactaaa 38  Q
    |||||||||||||||||||||||||||||||    
T  409 gacatcatcaaaacacaaacctataactaaa 379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 38
Target Start/End: Complemental strand, 10491387 - 10491357
Alignment:
Q  8 gacatcatcaaaacacaaacctataactaaa 38  Q
    |||||||||||||||||||||||||||||||    
T  10491387 gacatcatcaaaacacaaacctataactaaa 10491357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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