View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8135_low_12 (Length: 205)
Name: NF8135_low_12
Description: NF8135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8135_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 53467237 - 53467037
Alignment:
| Q |
1 |
ttcattcaaaatcataaggcattgggggcttatgcatcctctcacttatatattgctactttttcatctaatgttgaacttctacctcacacttgctaca |
100 |
Q |
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| T |
53467237 |
ttcattcaaaatcttaaggcattgggggcttatgcatcctctcacttatatattgctactttttcatctaatgttggacttctacctcacacttgctaca |
53467138 |
T |
|
| Q |
101 |
caacaatctccctctcaagtgtgggtcatccatccattcatttgtgtatgcccccctcaaatggatgctttttatatatacttgcaccaccatactcgac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||| || |
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| T |
53467137 |
caacaatctccctctcaagtgtgggtcatccatccattcatttgtgtatgc-cccctcaaattgatgctttttatatatacttgcaccaccatgctcaac |
53467039 |
T |
|
| Q |
201 |
ag |
202 |
Q |
| |
|
|| |
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|
| T |
53467038 |
ag |
53467037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 45635976 - 45636047
Alignment:
| Q |
78 |
acttctacctcacacttgctacacaacaatctccctctcaagtgtgggtcatccatccattcatttgtgtat |
149 |
Q |
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| T |
45635976 |
acttctatctcacacttggtacacaacaatctccctctcaagtgtgagtcatccatccattcatttgggtat |
45636047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 13154520 - 13154560
Alignment:
| Q |
78 |
acttctacctcacacttgctacacaacaatctccctctcaa |
118 |
Q |
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| T |
13154520 |
acttctaactcatacttgctacacaacaatcttcctctcaa |
13154560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 42730342 - 42730284
Alignment:
| Q |
71 |
atgttgaacttctacctcacacttgctacacaacaatctccctctcaagtgtgggtcat |
129 |
Q |
| |
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|||| ||||||||| |||| ||||||||||||||||||| || |||||||||| ||||| |
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|
| T |
42730342 |
atgtggaacttctaactcagacttgctacacaacaatcttcccctcaagtgtgagtcat |
42730284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 108
Target Start/End: Complemental strand, 28483780 - 28483750
Alignment:
| Q |
78 |
acttctacctcacacttgctacacaacaatc |
108 |
Q |
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||||||||||||||||||||||||||||||| |
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|
| T |
28483780 |
acttctacctcacacttgctacacaacaatc |
28483750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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