View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8135_low_2 (Length: 796)
Name: NF8135_low_2
Description: NF8135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8135_low_2 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 662; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 662; E-Value: 0
Query Start/End: Original strand, 20 - 796
Target Start/End: Original strand, 7559558 - 7560348
Alignment:
| Q |
20 |
agccactactgttctatcattgcacttgtggatgtggttgctccatgcatgtatcttagtaatatcattttccattgcctcttgtt---attaatttttg |
116 |
Q |
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| T |
7559558 |
agccactactgttctatcattgcacttgtggatgtggttgctccatgcatgtatcttagtaatatcattttccactgcctcttgttgttattaatttttg |
7559657 |
T |
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| Q |
117 |
tgtgtaaaaatgttgtgatggtaaatggaaatttc-ttgtgtcaacattagttttaatttgtggtatgcccaatttaagtgagatcacagtcaatggttt |
215 |
Q |
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| T |
7559658 |
tgtgtaaaaatgttgtgatggtaaatggaaatttccttgtgtctacattagttttaatttgtggcatgcccaatttaagtgagatcacagtcaatggttt |
7559757 |
T |
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| Q |
216 |
tagcattcatcaatttaagtggagacctgtcagatatgttggggacgtagtattagaaaaacagctagagttccgattttttcaagacaaccacaccccc |
315 |
Q |
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| T |
7559758 |
tagcattcatcaatttaagtg-agacctgtcagatatgttggggacgtagtattagaaaaacagctagagttccgattttttcaagacaaccacaccccc |
7559856 |
T |
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| Q |
316 |
aacggcgaagatattgggaatatgagaaatgagagcattcagatcggagaaaaactcattagaagtgaagcccaaagcgtgccatagatgagttcaggtt |
415 |
Q |
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| T |
7559857 |
aacggcgaagatattgggaatatgagaaatgagaacattcagatcggagaaaaactcattagaagtgaagcccaaagcgtgccatagatgagttcaggtt |
7559956 |
T |
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| Q |
416 |
atgcagtctctattgcaatgtagaaaggattcctcaaatgtaagattccgatggttcagaagagacagaatagggacagagttgttaaaaagactatcaa |
515 |
Q |
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| T |
7559957 |
atgcagtctctattgcaatgtagaaaggatttctcaaatgtaagattctgatggttcagaagagacagaatagggacagagttgttaaaaagacgatcaa |
7560056 |
T |
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| Q |
516 |
cactttcctccaagctgcatccatcaacacaaaaactagaatctgaatgaa------------agagtaaattatctatcgtgagaatcttattatttaa |
603 |
Q |
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| T |
7560057 |
cactttcctccaagctgcatccatcaacac-aaaactagaatctgaatgaataatttcaagctggagtaaattatctttcgtgagaatcttattatttaa |
7560155 |
T |
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| Q |
604 |
aaaacgtcaactaaacaaagaaacctcgaaggaacaactttaatccaaatgatacctgagactttaatcaatcgagatgctccacattagacaaaaaatg |
703 |
Q |
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| T |
7560156 |
aaaacgtcaaccaaacaaagaaacctcgaaggaacaactttaatccaaatgatacctgagactttaatcaatcgagatgctccacattagacaaaaaatg |
7560255 |
T |
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| Q |
704 |
atatactctactaactgtataaccttgaataggattgaactttcaatcccacttatcgtgctcattgacatgcaaaaaatgctatacaataaa |
796 |
Q |
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| T |
7560256 |
atatactctactaactgtataaccttgactaggattgaactttcaatcccacttatcgtgttcattgacatgcaaaaaatgttatacaataaa |
7560348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 671 - 760
Target Start/End: Original strand, 6319286 - 6319375
Alignment:
| Q |
671 |
tcaatcgagatgctccacattagacaaaaaatgatatactctactaactgtataaccttgaataggattgaactttcaatcccacttatc |
760 |
Q |
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|||||| | |||||||||||||||||| ||||||||||||| | ||||||||||||||| || ||||| ||| |||||||||||||| |
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| T |
6319286 |
tcaatcaatatgctccacattagacaacaaatgatatactccagtaactgtataaccttcccgagtattgagcttccaatcccacttatc |
6319375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 639 - 760
Target Start/End: Original strand, 6319584 - 6319706
Alignment:
| Q |
639 |
aactttaatccaaatgatacctgagactttaat-caatcgagatgctccacattagacaaaaaatgatatactctactaactgtataaccttgaatagga |
737 |
Q |
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| T |
6319584 |
aactttattccaaataataccgaagacttttgttcaatcaatatgctccacattagacaacaaatgatatactccactaattgtacaaccttcccgagta |
6319683 |
T |
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| Q |
738 |
ttgaactttcaatcccacttatc |
760 |
Q |
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| T |
6319684 |
ttgagcttccaatcccacttatc |
6319706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 594 - 760
Target Start/End: Complemental strand, 11760974 - 11760806
Alignment:
| Q |
594 |
tattatttaaaaaacgtcaactaaacaaagaaacct-cgaaggaacaactttaatccaaatgatacctgagacttt-aatcaatcgagatgctccacatt |
691 |
Q |
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| T |
11760974 |
tattacttaagagacgtcaactaaacaaataaaccttcaaagtaacatatttattccaaatgatatttgcgacttttaatcgatcatgatgctccacatt |
11760875 |
T |
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| Q |
692 |
agacaaaaaatgatatactctactaactgtataaccttgaataggattgaactttcaatcccacttatc |
760 |
Q |
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| T |
11760874 |
agacaataaatgctatcctccactaattgtataaccttcatacggattgaacttccaatcccccttatc |
11760806 |
T |
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