View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8135_low_3 (Length: 653)
Name: NF8135_low_3
Description: NF8135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8135_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 546; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 546; E-Value: 0
Query Start/End: Original strand, 18 - 639
Target Start/End: Complemental strand, 12096964 - 12096343
Alignment:
| Q |
18 |
aattgggaaggatgcaactttttgttcatggaaatcggagaatgatccttcattaggaaactatacaatgagtgttgattctgaagcatcgccgcagata |
117 |
Q |
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||||||||||||||| |||||||||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||||||||||||| || || ||| |
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| T |
12096964 |
aattgggaaggatgctactttttgttcatggaaatcagaggaagatccttcatttggaaactatacaatgagtgttgattctgaagcatcaccacatata |
12096865 |
T |
|
| Q |
118 |
gtgattatggaaggagagaaaagaaggtggagaagtggttattggaatggtagagttttcgcaggtgtaccaaatatgaccggaagatatcttttttata |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||| ||||||||||||||||||| |
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| T |
12096864 |
gtgattatggaaggagagaaaagaaggtggagaagtggttattgggatggtagagttttcacaggtgtgccaaatatgacaggaagatatcttttttata |
12096765 |
T |
|
| Q |
218 |
tgaagcattggaaaatagggataagatacggtttcagcttgggtatgatggatatgagagacaattcaggtggaatgaagaagagaaagaatgcaatgtg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12096764 |
tgaagcattggaaaatagggataagatacggtttcagcttgggtatgatggatatgagagacaattcaggtggaatgaagaagagaaagaatgcaatgtg |
12096665 |
T |
|
| Q |
318 |
ttacaaagtgagcttaataagaagtgtgagttttataattcatgtggtggttttgcaatatgtgatatgtctgatccaagtttgtgcaaatgcataaaag |
417 |
Q |
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| T |
12096664 |
ttacaaagtgagcttaataagaagtgtgagttttataattcatgtggtagttttgcaatatgtgatatgtctgattcaagtttgtgcaaatgcataaaag |
12096565 |
T |
|
| Q |
418 |
ggtttgagccaaaggatgtcaaaagttgggagagtgggaattggtcaaaagggtgtaagaggatgattccattgaagggtgagagaggtagtaatagttt |
517 |
Q |
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| T |
12096564 |
ggtttgagccaaaggatgtgaaaagttgggatagtgggaattggtcaaaagggtgtaagaggatgattccattgaagggtgagagaggcagtaatagttt |
12096465 |
T |
|
| Q |
518 |
tggtggagaagatggttttttggtgcaaagggttttgaagttgcctgattttgcacgtttggtgagtgctgcagatagtaaggattgtgaagcaatgcct |
617 |
Q |
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| T |
12096464 |
tggtggagaagatggttttttggtgcaaaggattttgaagttgcctgattttgcacgtttggtgagtgctgcagatagtaaggattgtgaagcaatgcct |
12096365 |
T |
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| Q |
618 |
tcagaccatttagtatgatgtc |
639 |
Q |
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||||||||||||||||| |||| |
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| T |
12096364 |
tcagaccatttagtatggtgtc |
12096343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 209 - 609
Target Start/End: Original strand, 36288844 - 36289244
Alignment:
| Q |
209 |
ttttttatatgaagcattggaaaatagggataagatacggtttcagcttgggtatgatggatatgagagacaattcaggtggaatgaagaagagaaagaa |
308 |
Q |
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|||| |||||||||||||||||||||| |||||| || |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36288844 |
ttttgtatatgaagcattggaaaatagtgataaggtaaggttccaacttggatatgatggatatgagagacaattcaggtggaatgaagaagagaaagaa |
36288943 |
T |
|
| Q |
309 |
tgcaatgtgttacaaagtgagcttaataagaagtgtgagttttataattcatgtggtggttttgcaatatgtgatatgtctgatccaagtttgtgcaaat |
408 |
Q |
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|| |||||| ||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36288944 |
tggaatgtgatactaagtgagcctaataagaagtgtgagttttataattcatgtggtagttttgcaatatgtgatatgtctgattcaagtttgtgcaaat |
36289043 |
T |
|
| Q |
409 |
gcataaaagggtttgagccaaaggatgtcaaaagttgggagagtgggaattggtcaaaagggtgtaagaggatgattccattgaagggtgagagaggtag |
508 |
Q |
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| T |
36289044 |
gcataaaagggtttgaaccaagggatgtgaaaagttggaatagtgggaattggtcaaaagggtgtaagaggatgactccattgaagagtgagagaggtgg |
36289143 |
T |
|
| Q |
509 |
taatagttttggtggagaagatggttttttggtgcaaagggttttgaagttgcctgattttgcacgtttggtgagtgctgcagatagtaaggattgtgaa |
608 |
Q |
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|||||||| ||||||||| ||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36289144 |
taatagttctggtggagatgatggttttttggtgcaaaagggtttgaagttacctgattttgcacgtttggtgagtgctgttgatagtaaggattgtgaa |
36289243 |
T |
|
| Q |
609 |
g |
609 |
Q |
| |
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| |
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| T |
36289244 |
g |
36289244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 36288610 - 36288805
Alignment:
| Q |
18 |
aattgggaaggatgcaactttttgttcatggaaatcggagaatgatccttcattaggaaactatacaatgagtgttgattctgaagcatcgccgcagata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36288610 |
aattgggaaggatgcaactttttgttcatggaaatcagagaatgatccttcattaggaaactatacaatgagtgttgattctgaagcatcgccgcagata |
36288709 |
T |
|
| Q |
118 |
gtgattatggaaggagagaaaagaaggtggagaagtggttattggaatggtagagttttcgcaggtgtaccaaatatgaccggaagatatcttttt |
213 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||| ||||||||| |
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| T |
36288710 |
gtgattatggaaggagagaaaagaaggtggagaagtggttattgggatggtagagttttcacaggtgtaccaaatatgacaggaagttatcttttt |
36288805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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