View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8135_low_4 (Length: 558)

Name: NF8135_low_4
Description: NF8135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8135_low_4
NF8135_low_4
[»] chr5 (38 HSPs)
chr5 (1-540)||(37032494-37033033)
chr5 (1-118)||(4943117-4943238)
chr5 (32-119)||(23661912-23661998)
chr5 (32-119)||(23796572-23796658)
chr5 (33-110)||(12713112-12713190)
chr5 (33-110)||(12774376-12774454)
chr5 (34-119)||(25456310-25456396)
chr5 (35-111)||(10827143-10827219)
chr5 (1-90)||(20928062-20928153)
chr5 (32-119)||(1649406-1649493)
chr5 (4-71)||(23661942-23662009)
chr5 (4-71)||(23796561-23796628)
chr5 (4-103)||(35813531-35813632)
chr5 (33-121)||(35461470-35461559)
chr5 (36-121)||(14604102-14604189)
chr5 (33-121)||(4943175-4943265)
chr5 (33-121)||(5746129-5746218)
chr5 (33-121)||(16327132-16327221)
chr5 (4-90)||(17400793-17400881)
chr5 (33-103)||(23662110-23662182)
chr5 (33-116)||(35461655-35461739)
chr5 (33-119)||(19550133-19550220)
chr5 (4-113)||(25456497-25456608)
chr5 (4-122)||(1996145-1996266)
chr5 (33-71)||(7209882-7209920)
chr5 (4-71)||(16327161-16327230)
chr5 (1-119)||(20927845-20927966)
chr5 (33-71)||(28559329-28559367)
chr5 (40-121)||(28559450-28559532)
chr5 (53-121)||(17400821-17400890)
chr5 (4-70)||(28559442-28559510)
chr5 (33-118)||(16327316-16327400)
chr5 (33-71)||(1996236-1996274)
chr5 (4-71)||(5746158-5746227)
chr5 (33-90)||(17400579-17400635)
chr5 (33-90)||(40980745-40980802)
chr5 (1-52)||(10827167-10827219)
chr5 (4-69)||(25456338-25456405)
[»] chr6 (22 HSPs)
chr6 (4-121)||(10356264-10356384)
chr6 (4-121)||(21598660-21598780)
chr6 (4-90)||(10356324-10356412)
chr6 (33-121)||(10356476-10356565)
chr6 (4-121)||(21598448-21598568)
chr6 (4-121)||(24059670-24059788)
chr6 (33-121)||(17342655-17342744)
chr6 (33-119)||(17136878-17136965)
chr6 (4-71)||(10356467-10356536)
chr6 (4-71)||(17136907-17136976)
chr6 (33-71)||(21598651-21598689)
chr6 (4-71)||(24059728-24059797)
chr6 (33-118)||(364020-364105)
chr6 (33-70)||(9982936-9982973)
chr6 (32-71)||(2761494-2761533)
chr6 (33-71)||(364203-364241)
chr6 (33-71)||(17342534-17342572)
chr6 (33-71)||(17342646-17342684)
chr6 (1-119)||(364214-364333)
chr6 (4-70)||(21598508-21598576)
chr6 (33-90)||(35050712-35050769)
chr6 (39-118)||(13273108-13273185)
[»] chr3 (36 HSPs)
chr3 (5-121)||(30954959-30955078)
chr3 (5-121)||(30970771-30970890)
chr3 (4-121)||(252049-252169)
chr3 (36-121)||(40286275-40286361)
chr3 (33-121)||(46337536-46337625)
chr3 (33-121)||(47069562-47069651)
chr3 (32-119)||(7607702-7607789)
chr3 (33-119)||(18020038-18020125)
chr3 (33-119)||(47891336-47891423)
chr3 (33-71)||(28813931-28813969)
chr3 (40-116)||(32186692-32186769)
chr3 (33-71)||(14964923-14964961)
chr3 (32-121)||(25848572-25848662)
chr3 (33-121)||(13903018-13903107)
chr3 (4-70)||(26724073-26724141)
chr3 (33-121)||(28813871-28813960)
chr3 (4-70)||(36900140-36900208)
chr3 (23-71)||(40209880-40209928)
chr3 (32-72)||(50332697-50332737)
chr3 (32-71)||(252139-252178)
chr3 (33-72)||(25848321-25848360)
chr3 (32-63)||(30954958-30954989)
chr3 (32-63)||(30970770-30970801)
chr3 (4-71)||(18020027-18020096)
chr3 (33-71)||(25848503-25848541)
chr3 (32-121)||(25848512-25848602)
chr3 (33-71)||(26976501-26976539)
chr3 (32-118)||(36375019-36375105)
chr3 (33-71)||(36667285-36667323)
chr3 (33-71)||(40286332-40286370)
chr3 (41-71)||(42866096-42866126)
chr3 (33-71)||(47891325-47891363)
chr3 (23-59)||(26724229-26724265)
chr3 (33-109)||(26724238-26724313)
chr3 (4-63)||(39714633-39714693)
chr3 (32-72)||(43650017-43650057)
[»] chr7 (27 HSPs)
chr7 (33-111)||(29710354-29710433)
chr7 (32-119)||(42313007-42313095)
chr7 (33-121)||(27576545-27576634)
chr7 (3-121)||(11975450-11975570)
chr7 (4-72)||(31453046-31453116)
chr7 (33-121)||(27280823-27280912)
chr7 (33-90)||(42312793-42312850)
chr7 (32-88)||(30662188-30662244)
chr7 (32-117)||(6222113-6222198)
chr7 (33-71)||(29019342-29019380)
chr7 (33-118)||(44293989-44294075)
chr7 (33-90)||(4048236-4048293)
chr7 (33-70)||(6694736-6694773)
chr7 (4-121)||(11975655-11975775)
chr7 (32-119)||(29710536-29710624)
chr7 (33-103)||(30869632-30869703)
chr7 (33-71)||(4048418-4048456)
chr7 (33-71)||(27576536-27576574)
chr7 (4-71)||(29710525-29710594)
chr7 (46-118)||(3198258-3198331)
chr7 (4-58)||(6222142-6222198)
chr7 (33-70)||(11975541-11975578)
chr7 (33-70)||(27280815-27280852)
chr7 (33-90)||(29710414-29710470)
chr7 (36-77)||(30869446-30869487)
chr7 (58-121)||(6694744-6694808)
chr7 (33-73)||(26185963-26186003)
[»] scaffold0018 (4 HSPs)
scaffold0018 (33-121)||(161619-161708)
scaffold0018 (4-121)||(161407-161527)
scaffold0018 (4-71)||(161467-161536)
scaffold0018 (33-71)||(161610-161648)
[»] chr4 (42 HSPs)
chr4 (33-121)||(7246026-7246115)
chr4 (4-116)||(40395102-40395217)
chr4 (1-121)||(40146952-40147074)
chr4 (33-121)||(41083088-41083177)
chr4 (4-121)||(41083268-41083388)
chr4 (33-121)||(45038390-45038479)
chr4 (34-90)||(45038281-45038337)
chr4 (33-119)||(2470124-2470211)
chr4 (4-70)||(24684254-24684320)
chr4 (4-71)||(45038381-45038450)
chr4 (48-116)||(9999338-9999407)
chr4 (33-121)||(46196144-46196233)
chr4 (33-121)||(53863351-53863440)
chr4 (4-81)||(24684055-24684134)
chr4 (33-119)||(2469933-2470019)
chr4 (4-71)||(2787950-2788017)
chr4 (33-88)||(7246086-7246141)
chr4 (32-71)||(51950563-51950602)
chr4 (32-90)||(11884649-11884707)
chr4 (4-71)||(53863380-53863449)
chr4 (32-77)||(7246283-7246328)
chr4 (4-57)||(50290186-50290239)
chr4 (35-119)||(2787923-2788006)
chr4 (23-59)||(12698010-12698046)
chr4 (32-72)||(21322034-21322074)
chr4 (32-103)||(44057295-44057367)
chr4 (32-71)||(12498713-12498752)
chr4 (32-71)||(41083259-41083298)
chr4 (32-70)||(2788160-2788198)
chr4 (32-121)||(12498653-12498743)
chr4 (33-83)||(12498873-12498923)
chr4 (32-73)||(12697114-12697156)
chr4 (4-71)||(17231991-17232060)
chr4 (33-63)||(17236808-17236838)
chr4 (39-111)||(26782332-26782406)
chr4 (4-71)||(40395162-40395231)
chr4 (33-71)||(41083148-41083186)
chr4 (33-119)||(9999506-9999591)
chr4 (4-121)||(24684262-24684379)
chr4 (3-72)||(25055883-25055954)
chr4 (32-121)||(45038222-45038309)
chr4 (4-89)||(46196365-46196452)
[»] chr2 (23 HSPs)
chr2 (4-119)||(36217160-36217275)
chr2 (33-119)||(31630291-31630377)
chr2 (1-63)||(36694374-36694436)
chr2 (33-121)||(1316069-1316158)
chr2 (33-121)||(9500939-9501028)
chr2 (4-70)||(25895182-25895250)
chr2 (32-121)||(36694347-36694435)
chr2 (32-63)||(3876951-3876982)
chr2 (33-72)||(33847697-33847736)
chr2 (33-71)||(9500999-9501037)
chr2 (33-71)||(11791804-11791842)
chr2 (4-71)||(25894968-25895037)
chr2 (33-118)||(29379910-29379996)
chr2 (33-71)||(31630159-31630197)
chr2 (33-71)||(36694519-36694557)
chr2 (1-46)||(45388495-45388541)
chr2 (4-119)||(31630070-31630186)
chr2 (10-88)||(39442243-39442323)
chr2 (39-103)||(3876768-3876832)
chr2 (34-70)||(4188657-4188693)
chr2 (32-60)||(31630291-31630319)
chr2 (58-121)||(33847707-33847771)
chr2 (1-60)||(36217160-36217220)
[»] scaffold0279 (2 HSPs)
scaffold0279 (33-121)||(1149-1238)
scaffold0279 (33-71)||(1140-1178)
[»] chr1 (15 HSPs)
chr1 (3-60)||(1173074-1173132)
chr1 (33-119)||(40892516-40892602)
chr1 (4-121)||(33650401-33650522)
chr1 (4-72)||(7489962-7490032)
chr1 (33-72)||(52913173-52913212)
chr1 (1-121)||(52913031-52913156)
chr1 (4-61)||(2633538-2633597)
chr1 (35-71)||(18981086-18981122)
chr1 (2-121)||(18608793-18608915)
chr1 (32-71)||(33650492-33650531)
chr1 (65-119)||(1173078-1173132)
chr1 (32-118)||(18204930-18205016)
chr1 (33-71)||(18608672-18608710)
chr1 (57-121)||(34173316-34173381)
chr1 (50-121)||(18608629-18608701)
[»] chr8 (21 HSPs)
chr8 (33-121)||(6220397-6220486)
chr8 (33-121)||(41151439-41151528)
chr8 (4-63)||(41151680-41151741)
chr8 (4-70)||(6220389-6220457)
chr8 (4-121)||(24909618-24909738)
chr8 (33-116)||(27052613-27052697)
chr8 (33-118)||(20209477-20209563)
chr8 (33-118)||(20229185-20229271)
chr8 (33-103)||(24083264-24083334)
chr8 (33-91)||(27052502-27052560)
chr8 (33-71)||(27127968-27128006)
chr8 (33-121)||(9400041-9400130)
chr8 (34-121)||(27052443-27052531)
chr8 (32-71)||(29427960-29427999)
chr8 (33-63)||(9400040-9400070)
chr8 (33-121)||(27127911-27127997)
chr8 (4-118)||(27128092-27128209)
chr8 (33-63)||(41151499-41151529)
chr8 (33-71)||(41151611-41151649)
chr8 (32-72)||(15563877-15563917)
chr8 (4-57)||(27052613-27052668)
[»] scaffold0002 (3 HSPs)
scaffold0002 (4-121)||(12054-12171)
scaffold0002 (4-103)||(12278-12377)
scaffold0002 (4-71)||(12112-12180)
[»] scaffold0157 (3 HSPs)
scaffold0157 (32-71)||(21725-21764)
scaffold0157 (33-83)||(21554-21604)
scaffold0157 (32-121)||(21734-21824)


Alignment Details
Target: chr5 (Bit Score: 536; Significance: 0; HSPs: 38)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 540
Target Start/End: Complemental strand, 37033033 - 37032494
Alignment:
Q  1 tcttttaagtttgagatttatgacagattagttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagtta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37033033 tcttttaagtttgagatttatgacagattagttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagtta 37032934  T
Q  101 tttgggtcacaaataagtcctaacgttttcgatttagtccttcataaatgcaaatgtaaattaatatttattttataatttaaaaccgatcttgaatttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37032933 tttgggtcacaaataagtcctaacgttttcgatttagtccttcataaatgcaaatgtaaattaatatttattttataatttaaaaccgatcttgaatttg 37032834  T
Q  201 gactccccattcttgatcaaggaaccatcgatcttttactgcgtgaatgttgagaatctcttcgtacaacggaaccgggtgccttgcacttgtgcaattt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37032833 gactccccattcttgatcaaggaaccatcgatcttttactgcgtgaatgttgagaatctcttagtacaacggaaccgggtgccttgcacttgtgcaattt 37032734  T
Q  301 aggctgatctagtcgtctcataggttaaaattcaagcttgcactctgggctgatatttgagatcataggtttagataccataactacgtatacgtgaatt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37032733 aggctgatctagtcgtctcataggttaaaattcaagcttgcactctgggctgatatttgagatcataggtttagataccataactacgtatacgtgaatt 37032634  T
Q  401 tattaataaagacaattcaactttacgtaggtttagacttattatttgcatgtatgctctctcatatcgaagacgttgactacttctatattctttgaat 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37032633 tattaataaagacaattcaactttacgtaggtttagacttattatttgcatgtatgctctctcatatcgaagacgttgactacttctatattctttgaat 37032534  T
Q  501 gtccattttcatttttcattttggataataatggcttatt 540  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37032533 gtccattttcatttttcattttggataataatggcttatt 37032494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 4943238 - 4943117
Alignment:
Q  1 tcttttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt--ttttaa 96  Q
    ||||||||||||||||||| | ||| ||| ||  ||||| |||||||| |||||||||||||||| |||||||| |||||||||| |||| |  ||||||    
T  4943238 tcttttaagtttgagatttgtaacatattggtactttaaattattttgatcacacataagtcctttaagtttgaaatttataacagattgatccttttaa 4943139  T
Q  97 gttatttgggtcacaaataagt 118  Q
    ||||||| ||||||| ||||||    
T  4943138 gttattttggtcacacataagt 4943117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 23661912 - 23661998
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttatttgggtcacaaataagtc 119  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| | ||| ||| | ||||||||||||| ||||||| |||||||    
T  23661912 ttttaagttattttggttacacataagtcctttaagtttgatatttgtgacagatt-gattttaagttattttggtcacacataagtc 23661998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 23796658 - 23796572
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttatttgggtcacaaataagtc 119  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| | ||| ||| | ||||||||||||| ||||||| |||||||    
T  23796658 ttttaagttattttggttacacataagtcctttaagtttgatatttgtgacagatt-gattttaagttattttggtcacacataagtc 23796572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 12713190 - 12713112
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcac 110  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||| | ||||||||||||| ||||||    
T  12713190 tttaagttatttttgtcacacataagtcctttaagtttgagatttctaacatattgatcttttaagttattttggtcac 12713112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 12774454 - 12774376
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcac 110  Q
    ||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||| | ||||||||||||| ||||||    
T  12774454 tttaagttatttttgtcacacataagtcctttaagtttgagatttctaacatattgatcttttaagttattttggtcac 12774376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 34 - 119
Target Start/End: Original strand, 25456310 - 25456396
Alignment:
Q  34 ttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtc 119  Q
    ||||||||||||| |||||||||||||||| ||||||||  ||| ||||| ||||||  |||||||||||| |||||||||||||||    
T  25456310 ttaagttattttgatcacacataagtcctttaagtttgaggtttgtaacagattggtcctttaagttattttggtcacaaataagtc 25456396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 10827143 - 10827219
Alignment:
Q  35 taagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttatttgggtcaca 111  Q
    |||||||||||||||||||||||||| || ||||||||  ||| ||||| |||||| |||||||||||| |||||||    
T  10827143 taagttattttggtcacacataagtcttttaagtttgagttttgtaacagattggtctttaagttattttggtcaca 10827219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 20928153 - 20928062
Alignment:
Q  1 tcttttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt 90  Q
    |||||||| |||||| ||||| ||||||| ||  ||||||||||||||||||||||||||||||| ||||||||  ||| ||||| ||||||    
T  20928153 tcttttaactttgaggtttataacagatttgtcctttaagttattttggtcacacataagtcctttaagtttgagttttctaacaaattggt 20928062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 1649493 - 1649406
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttatttgggtcacaaataagtc 119  Q
    ||||||||||||||| ||||||| ||||| || ||| ||||  ||||||||||||||||||||||| ||||| ||||| | |||||||    
T  1649493 ttttaagttattttgatcacacacaagtcattaaagcttgaggtttataacatattggtttttaagctattttggtcagacataagtc 1649406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 23661942 - 23662009
Alignment:
Q  4 tttaagtttgagatttatgacagattagttttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||||||||| |||| |||||||||  ||||||||||||||||||||||||||||| || |||||||    
T  23661942 tttaagtttgatatttgtgacagattgattttaagttattttggtcacacataagtcttttaagtttg 23662009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 23796628 - 23796561
Alignment:
Q  4 tttaagtttgagatttatgacagattagttttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||||||||| |||| |||||||||  ||||||||||||||||||||||||||||| || |||||||    
T  23796628 tttaagtttgatatttgtgacagattgattttaagttattttggtcacacataagtcttttaagtttg 23796561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 35813632 - 35813531
Alignment:
Q  4 tttaagtttgagatttatgacagattagtt--ttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttat 101  Q
    ||||||||| || ||| | |||||||||||  ||||||||||||||| |||||||||||||| |||| |||  ||| ||||| ||| |||||||||||||    
T  35813632 tttaagtttaaggtttgtaacagattagttatttaagttattttggttacacataagtcctttaagtgtgaggtttgtaacagatttgtttttaagttat 35813533  T
Q  102 tt 103  Q
    ||    
T  35813532 tt 35813531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 35461470 - 35461559
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    ||||||||||||||||||||||||||||||  ||||||||  ||| ||||| ||||||  ||||| |||||| | |||||||||||||||    
T  35461470 tttaagttattttggtcacacataagtcctgtaagtttgaagtttgtaacagattggtcctttaaattattttgatcacaaataagtcct 35461559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 14604102 - 14604189
Alignment:
Q  36 aagttattttggtcacacataagtccttcaagtttgatatttataacatattggt--ttttaagttatttgggtcacaaataagtcct 121  Q
    |||||||||||||||||||||||||||| ||||||||  ||| ||||| |||| |  ||||| ||||||| ||||||| |||||||||    
T  14604102 aagttattttggtcacacataagtcctttaagtttgaggtttgtaacagattgatcattttatgttattttggtcacatataagtcct 14604189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 4943265 - 4943175
Alignment:
Q  33 tttaagttattttggtcacacataag-tccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    |||||||||||||||||||||||||| || || |||||||| |||| ||||||||||||  ||||| |||||| | ||||| |||||||||    
T  4943265 tttaagttattttggtcacacataagttcttttaagtttgagatttgtaacatattggtactttaaattattttgatcacacataagtcct 4943175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 5746129 - 5746218
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    ||||||||||||||||||||||||||| ||| || |||||  ||||||||| ||||||  |||||||||||| ||| | | |||||||||    
T  5746129 tttaagttattttggtcacacataagttctttaaatttgaggtttataacagattggtcatttaagttattttggtaaaacataagtcct 5746218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 16327132 - 16327221
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    ||||||||||||| ||| ||||||||||||| ||||||||  ||| ||||| ||||||  |||||||||||| ||| ||| |||||||||    
T  16327132 tttaagttattttagtcgcacataagtcctttaagtttgaggtttgtaacagattggtcgtttaagttattttggtaacacataagtcct 16327221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 17400881 - 17400793
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt 90  Q
    |||||||||||||||| | ||| ||| ||  |||||||||||||| |||||||||||||||| ||||||||  ||| ||||| ||||||    
T  17400881 tttaagtttgagatttgtaacatattggtcatttaagttattttgatcacacataagtcctttaagtttgagttttgtaacagattggt 17400793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 23662182 - 23662110
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt--ttttaagttattt 103  Q
    |||||||||||||||| |||||||||| ||| |||||||| |||| ||||| ||||||  |||||||||||||    
T  23662182 tttaagttattttggttacacataagttctttaagtttgagatttgtaacaaattggttcttttaagttattt 23662110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 35461739 - 35461655
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataa 116  Q
    |||||||||||||||||||||||||||| || || ||||| |||| ||||| |||| |  ||||||||||||  |||||||||||    
T  35461739 tttaagttattttggtcacacataagtcatttaattttgagatttgtaacagattgatcatttaagttatttttgtcacaaataa 35461655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 19550133 - 19550220
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtc 119  Q
    |||||||||||||||| ||||||||||| || |||||||| |||| |||||| ||| |  |||||||||||| ||| ||| |||||||    
T  19550133 tttaagttattttggtgacacataagtcttttaagtttgagatttttaacattttgatcatttaagttattttggttacacataagtc 19550220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 25456608 - 25456497
Alignment:
Q  4 tttaagtttgagatttatgacagattagt-tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttat 101  Q
    |||||||||||| ||| | ||||||| || ||||||||||||| ||||||||||| | ||| ||||||||  ||| ||| | ||||||  ||||||||||    
T  25456608 tttaagtttgaggtttgtaacagattggtctttaagttattttagtcacacataaatactttaagtttgaggtttgtaatagattggtcctttaagttat 25456509  T
Q  102 ttgggtcacaaa 113  Q
    || |||||||||    
T  25456508 tttggtcacaaa 25456497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 122
Target Start/End: Original strand, 1996145 - 1996266
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagtta 100  Q
    |||||||||||||||| | |||||||  |  |||||||||||||||||||| |||| ||||| |||||||   ||| ||| | ||| ||  |||||||||    
T  1996145 tttaagtttgagatttgtaacagattgatattttaagttattttggtcacatataaatcctttaagtttggggtttgtaatagattagtcctttaagtta 1996244  T
Q  101 tttgggtcacaaataagtccta 122  Q
    ||| ||||||| ||||||||||    
T  1996245 ttttggtcacacataagtccta 1996266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 7209882 - 7209920
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  7209882 tttaagttattttggtcacacataagtcctttaagtttg 7209920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 16327161 - 16327230
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||| ||| | ||||||| ||  |||||||||||||||| |||||||||||||| |||||||    
T  16327161 tttaagtttgaggtttgtaacagattggtcgtttaagttattttggtaacacataagtcctttaagtttg 16327230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 20927845 - 20927966
Alignment:
Q  1 tcttttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaag 97  Q
    ||||||||||||||||||| | | |||||  |  ||||||||||||| || |||||||||||||| || |||||  ||| ||| | ||||||  ||||||    
T  20927845 tcttttaagtttgagatttgtaatagattgatcatttaagttattttagttacacataagtcctttaaatttgaggtttgtaataaattggtcatttaag 20927944  T
Q  98 ttatttgggtcacaaataagtc 119  Q
    |||||| |||||||| ||||||    
T  20927945 ttattttggtcacaagtaagtc 20927966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 28559329 - 28559367
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  28559329 tttaagttattttggtcacacataagtcctttaagtttg 28559367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 28559532 - 28559450
Alignment:
Q  40 tattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    ||||||||||||||| |||||||| ||||||||  ||||||||| ||||||  ||||| ||||||  |||||| |||||||||    
T  28559532 tattttggtcacacacaagtcctttaagtttgaggtttataacagattggtcctttaaattattttagtcacacataagtcct 28559450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 53 - 121
Target Start/End: Complemental strand, 17400890 - 17400821
Alignment:
Q  53 cataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    ||||||||||| |||||||| |||| ||||||||||||  |||||||||||| | ||||| |||||||||    
T  17400890 cataagtcctttaagtttgagatttgtaacatattggtcatttaagttattttgatcacacataagtcct 17400821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 28559510 - 28559442
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagttt 70  Q
    |||||||||||| ||||| ||||||| ||  ||||| ||||||| ||||||||||||||||| ||||||    
T  28559510 tttaagtttgaggtttataacagattggtcctttaaattattttagtcacacataagtcctttaagttt 28559442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 16327400 - 16327316
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtt-tttaagttatttgggtcacaaataagt 118  Q
    ||||||||||||| |  |||||||||||||| ||||||||  ||| ||||| |||| |  |||||||||||| ||||||||||||||    
T  16327400 tttaagttattttag--acacataagtcctttaagtttgaggtttgtaacagattgatcctttaagttattttggtcacaaataagt 16327316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 1996236 - 1996274
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  1996236 tttaagttattttggtcacacataagtcctataagtttg 1996274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 5746158 - 5746227
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||| |||||| ||||| ||||||| ||  |||||||||||||||| | |||||||||||| |||||||    
T  5746158 tttaaatttgaggtttataacagattggtcatttaagttattttggtaaaacataagtcctttaagtttg 5746227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 17400579 - 17400635
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt 90  Q
    |||||||||||||| ||||||||||||| || |||||||| |||| ||||| ||||||    
T  17400579 tttaagttattttg-tcacacataagtcttttaagtttgaaatttgtaacaaattggt 17400635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 40980745 - 40980802
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt 90  Q
    |||||||||||||| |||||||||||| ||| |||||||| |||| ||| | ||||||    
T  40980745 tttaagttattttgatcacacataagtactttaagtttgaaatttgtaataaattggt 40980802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10827167 - 10827219
Alignment:
Q  1 tcttttaagtttgagatttatgacagattagt-tttaagttattttggtcaca 52  Q
    ||||||||||||||| ||| | ||||||| || ||||||||||||||||||||    
T  10827167 tcttttaagtttgagttttgtaacagattggtctttaagttattttggtcaca 10827219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 69
Target Start/End: Original strand, 25456338 - 25456405
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtt 69  Q
    |||||||||||| ||| | ||||||| ||  |||||||||||||||||||| ||||||| || |||||    
T  25456338 tttaagtttgaggtttgtaacagattggtcctttaagttattttggtcacaaataagtcttttaagtt 25456405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 10356264 - 10356384
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtt-tttaagtta 100  Q
    |||||||||||| ||| | ||| ||||||  ||||| ||||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||||||||    
T  10356264 tttaagtttgaggtttgtaacaaattagtcctttaaattattttggtcacacataagtcctttaagtttgatatttgtaacagattggttctttaagtta 10356363  T
Q  101 tttgggtcacaaataagtcct 121  Q
    ||| |||||||  ||||||||    
T  10356364 ttttggtcacacttaagtcct 10356384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 21598780 - 21598660
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagtta 100  Q
    |||||||||||| ||| | ||||||| ||  |||||||||||||| || ||||||||||||| |||||||   ||| ||||||||||||  |||||||||    
T  21598780 tttaagtttgaggtttgtaacagattggtcctttaagttattttgttctcacataagtcctttaagtttgtggtttgtaacatattggtcctttaagtta 21598681  T
Q  101 tttgggtcacaaataagtcct 121  Q
    ||| ||||||| |||||||||    
T  21598680 ttttggtcacacataagtcct 21598660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 10356324 - 10356412
Alignment:
Q  4 tttaagtttgagatttatgacagattagtt--ttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt 90  Q
    ||||||||||| |||| | ||||||| |||  |||||||||||||||||||| ||||||||| ||||||||||||| ||| | ||||||    
T  10356324 tttaagtttgatatttgtaacagattggttctttaagttattttggtcacacttaagtcctttaagtttgatatttgtaatagattggt 10356412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 10356565 - 10356476
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    |||| ||||||||||| |||||||||||||| |||||||| |||| ||||| |||||| |||||||||||||  | |||| |||||||||    
T  10356565 tttaggttattttggtaacacataagtcctttaagtttgagatttgtaacagattggtcttttaagttatttttgccacacataagtcct 10356476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 21598448 - 21598568
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagtta 100  Q
    |||||||||||| ||||| ||||||| ||  ||||||||||||||||  ||||||||||||| ||||||||  ||| ||||| ||||||  |||||||||    
T  21598448 tttaagtttgaggtttataacagattggtcctttaagttattttggttgcacataagtcctttaagtttgaggtttgtaacagattggtcctttaagtta 21598547  T
Q  101 tttgggtcacaaataagtcct 121  Q
    ||| | || || |||||||||    
T  21598548 ttttgatcccacataagtcct 21598568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 24059670 - 24059788
Alignment:
Q  4 tttaagtttgagatttatgacagattagttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatt 102  Q
    |||||||||||| ||| | ||| |||  |||||||||| ||||| | ||||||||||||| ||||||||  ||||||||| |||| |  ||||| |||||    
T  24059670 tttaagtttgaggtttgtaacatattgattttaagttactttggccccacataagtcctttaagtttgaggtttataacagattgatcatttaaattatt 24059769  T
Q  103 tgggtcacaaataagtcct 121  Q
    | ||||||| |||||||||    
T  24059770 ttggtcacacataagtcct 24059788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 17342744 - 17342655
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    |||||||||||||||| | ||||||||| || ||||||||  ||| |||||| |||||  |||||||||||| ||||||| |||||||||    
T  17342744 tttaagttattttggtaatacataagtcttttaagtttgaggtttgtaacatgttggtcctttaagttatttcggtcacacataagtcct 17342655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 17136878 - 17136965
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtt-tttaagttatttgggtcacaaataagtc 119  Q
    ||||||||||||||||| |||||||||| || ||||||||  ||| ||||| |||  || |||||||||||| ||||||| |||||||    
T  17136878 tttaagttattttggtctcacataagtcatttaagtttgaggtttgtaacagattaattctttaagttattttggtcacacataagtc 17136965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 10356536 - 10356467
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||||||| | ||||||| ||  ||||||||||||| | ||||||||||||||| |||||||    
T  10356536 tttaagtttgagatttgtaacagattggtcttttaagttatttttgccacacataagtcctttaagtttg 10356467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 17136907 - 17136976
Alignment:
Q  4 tttaagtttgagatttatgacagattagtt--ttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||| ||| | |||||||| ||  ||||||||||||||||||||||||||| || |||||||    
T  17136907 tttaagtttgaggtttgtaacagattaattctttaagttattttggtcacacataagtcttttaagtttg 17136976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 21598689 - 21598651
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  21598689 tttaagttattttggtcacacataagtcctttaagtttg 21598651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 24059728 - 24059797
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||| ||||| |||||||  |  ||||| ||||||||||||||||||||||||| |||||||    
T  24059728 tttaagtttgaggtttataacagattgatcatttaaattattttggtcacacataagtcctttaagtttg 24059797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 364020 - 364105
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttatttgggtcacaaataagt 118  Q
    ||||| |||||||||| | ||| |||||||| |||||| |  ||| ||||| |||| |||||||||| ||| ||||||||||||||    
T  364020 tttaaattattttggttaaacagaagtcctttaagtttaaggtttgtaacagattgatttttaagttgttttggtcacaaataagt 364105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 9982973 - 9982936
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagttt 70  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  9982973 tttaagttattttggtcacacataagtcctttaagttt 9982936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 2761494 - 2761533
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  2761494 ttttaagttattttgatcacacataagtcctttaagtttg 2761533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 364241 - 364203
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||||||||||||||||||| || |||||||    
T  364241 tttaagttattttggtcacacataagtcttttaagtttg 364203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 17342534 - 17342572
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  17342534 tttaagttatttcggtcacacataagtcctttaagtttg 17342572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 17342684 - 17342646
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||| |||||||||||||||||| |||||||    
T  17342684 tttaagttatttcggtcacacataagtcctttaagtttg 17342646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 364333 - 364214
Alignment:
Q  1 tcttttaagtttgagatttatgacagattagtt--ttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagt 98  Q
    |||||||||||||| |||||| | ||||| |||  |||| |||||||||| |||   || ||||| || |||||||||| ||| | |||| | |||||||    
T  364333 tcttttaagtttgaaatttataatagatt-gttccttaaattattttggttacatcaaattcctttaaatttgatatttgtaatagattgatctttaagt 364235  T
Q  99 tatttgggtcacaaataagtc 119  Q
    ||||| ||||||| |||||||    
T  364234 tattttggtcacacataagtc 364214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 21598508 - 21598576
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagttt 70  Q
    |||||||||||| ||| | ||||||| ||  |||||||||||||| || ||||||||||||| ||||||    
T  21598508 tttaagtttgaggtttgtaacagattggtcctttaagttattttgatcccacataagtcctttaagttt 21598576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 35050769 - 35050712
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt 90  Q
    |||||||||||| | |||||||||||| ||| |||||||| |||| ||||| ||||||    
T  35050769 tttaagttatttcgatcacacataagttctttaagtttgagatttgtaacagattggt 35050712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 118
Target Start/End: Original strand, 13273108 - 13273185
Alignment:
Q  39 ttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttatttgggtcacaaataagt 118  Q
    |||||||||||| |||||||| ||| ||||||||  ||||||||| |||| ||||  |||||||| |||| || ||||||    
T  13273108 ttattttggtcatacataagttctttaagtttgaggtttataacagattgatttt--agttattttggtcccacataagt 13273185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 30955078 - 30954959
Alignment:
Q  5 ttaagtttgagatttatgacagattagt-tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt--ttttaagttat 101  Q
    ||||||||||| ||| | | |||||||| ||||||||||||||||||||||||||||||| | |||||| |||| ||| | ||||||  |||||||||||    
T  30955078 ttaagtttgaggtttgtaatagattagtgtttaagttattttggtcacacataagtcctttatgtttgagatttgtaagagattggtccttttaagttat 30954979  T
Q  102 ttgggtcacaaataagtcct 121  Q
    || ||||||| |||||||||    
T  30954978 tttggtcacacataagtcct 30954959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 30970890 - 30970771
Alignment:
Q  5 ttaagtttgagatttatgacagattagt-tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt--ttttaagttat 101  Q
    ||||||||||| ||| | | |||||||| ||||||||||||||||||||||||||||||| | |||||| |||| ||| | ||||||  |||||||||||    
T  30970890 ttaagtttgaggtttgtaatagattagtgtttaagttattttggtcacacataagtcctttatgtttgagatttgtaagagattggtccttttaagttat 30970791  T
Q  102 ttgggtcacaaataagtcct 121  Q
    || ||||||| |||||||||    
T  30970790 tttggtcacacataagtcct 30970771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 252049 - 252169
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagtta 100  Q
    |||||||||||| ||||| | ||||| ||  ||||||||||||||||||||| ||||||||| |||||| |  ||| ||||| ||  || ||||||||||    
T  252049 tttaagtttgaggtttataatagattggtcatttaagttattttggtcacacgtaagtcctttaagtttaaggtttgtaacagatcagtcttttaagtta 252148  T
Q  101 tttgggtcacaaataagtcct 121  Q
    ||| |||||||||||||||||    
T  252149 ttttggtcacaaataagtcct 252169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 40286275 - 40286361
Alignment:
Q  36 aagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    ||||||||||| |||||||||||||||| ||||||||  |||||||||||||| |  |||||||||||| ||||||| | |||||||    
T  40286275 aagttattttgatcacacataagtcctttaagtttgaggtttataacatattgttcctttaagttattttggtcacacagaagtcct 40286361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 46337536 - 46337625
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtt-tttaagttatttgggtcacaaataagtcct 121  Q
    ||||| ||||||||||||||||||||||||| ||||||||  ||| |||||||||  || |||||||||||| ||||||| |||| ||||    
T  46337536 tttaaattattttggtcacacataagtcctttaagtttgaagtttgtaacatattaattctttaagttattttggtcacagataaatcct 46337625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 47069562 - 47069651
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtt-tttaagttatttgggtcacaaataagtcct 121  Q
    |||||||||||||| |||||||||||| ||| ||||||||  ||| ||||| ||||||| ||| |||||||| ||||||| |||||||||    
T  47069562 tttaagttattttgatcacacataagttctttaagtttgagttttgtaacaaattggttcttttagttattttggtcacacataagtcct 47069651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 7607789 - 7607702
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttatttgggtcacaaataagtc 119  Q
    |||||||||||||| |||  | ||||||| || ||||||||| ||| |||||||||| |||||||||||||| ||||||  |||||||    
T  7607789 ttttaagttattttcgtcttatataagtcatttaagtttgatgtttgtaacatattgatttttaagttattttggtcacgcataagtc 7607702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 18020125 - 18020038
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtc 119  Q
    |||||||||||||||||| |||||||||||| |||||| |  ||||||||| ||||||  |||||||||||| ||| ||| |||||||    
T  18020125 tttaagttattttggtcaaacataagtcctttaagtttaaggtttataacagattggtcgtttaagttattttggttacacataagtc 18020038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 47891423 - 47891336
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtc 119  Q
    |||||||||||||| ||||||||||||||||  |||||||  |||  |||||||||||  |||||||||||| ||||||| |||||||    
T  47891423 tttaagttattttgatcacacataagtcctttgagtttgaggtttgcaacatattggtcctttaagttattttggtcacacataagtc 47891336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 28813931 - 28813969
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28813931 tttaagttattttggtcacacataagtccttcaagtttg 28813969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 40 - 116
Target Start/End: Complemental strand, 32186769 - 32186692
Alignment:
Q  40 tattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataa 116  Q
    |||||||||||||||||||||||| ||||||||  ||| |||||||||| | ||||||||||||| ||| ||| ||||    
T  32186769 tattttggtcacacataagtcctttaagtttgaggtttgtaacatattgatgttttaagttattttggttacacataa 32186692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 14964923 - 14964961
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  14964923 tttaagttattttggtcacacataagtcctttaagtttg 14964961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 25848662 - 25848572
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    ||||||||||||||||| |||||||||||||| ||||||||  ||| ||| | |||| | |||||||||||||   ||||| |||||||||    
T  25848662 ttttaagttattttggtaacacataagtccttaaagtttgaggtttgtaataaattgatcttttaagttattttaatcacacataagtcct 25848572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 13903107 - 13903018
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    ||||||||||||||||  ||||||| ||||| |||| |||  ||| ||||||||| || ||||||||||||| ||| ||| |||||||||    
T  13903107 tttaagttattttggttgcacataaatcctttaagtctgaggtttgtaacatattagtcttttaagttattttggttacatataagtcct 13903018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 26724073 - 26724141
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagttt 70  Q
    ||||||||| |||||| | | ||||||||  |||||||||||||||||||| |||||||||| ||||||    
T  26724073 tttaagtttaagatttgtaaaagattagtcatttaagttattttggtcacatataagtcctttaagttt 26724141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 28813871 - 28813960
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    |||||||||||| ||||||| |||||| ||| |||||||| |||| ||| | |||| |  |||||||||||| ||||||| |||||||||    
T  28813871 tttaagttatttaggtcacatataagttctttaagtttgagatttgtaataaattgatcatttaagttattttggtcacacataagtcct 28813960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 36900208 - 36900140
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagttt 70  Q
    |||||||||||||||||| | ||||| ||  |||||||||||||||| ||||||| |||||| ||||||    
T  36900208 tttaagtttgagatttataatagattggtcctttaagttattttggttacacataggtcctttaagttt 36900140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 40209928 - 40209880
Alignment:
Q  23 acagattagttttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||||| |||||||| ||||||||||||||||||||| || |||||||    
T  40209928 acagattggttttaagatattttggtcacacataagtcgtttaagtttg 40209880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 50332737 - 50332697
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttga 72  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  50332737 ttttaagttattttggttacacataagtcctttaagtttga 50332697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 252139 - 252178
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  252139 ttttaagttattttggtcacaaataagtcctttaagtttg 252178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 25848321 - 25848360
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttga 72  Q
    |||||||||||||||||||||| |||||||| ||||||||    
T  25848321 tttaagttattttggtcacacacaagtcctttaagtttga 25848360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 63
Target Start/End: Complemental strand, 30954989 - 30954958
Alignment:
Q  32 ttttaagttattttggtcacacataagtcctt 63  Q
    ||||||||||||||||||||||||||||||||    
T  30954989 ttttaagttattttggtcacacataagtcctt 30954958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 63
Target Start/End: Complemental strand, 30970801 - 30970770
Alignment:
Q  32 ttttaagttattttggtcacacataagtcctt 63  Q
    ||||||||||||||||||||||||||||||||    
T  30970801 ttttaagttattttggtcacacataagtcctt 30970770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 18020096 - 18020027
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||||||| || ||||| ||||||| ||  |||||||||||||||| ||||||||||| || |||||||    
T  18020096 tttaagtttaaggtttataacagattggtcgtttaagttattttggttacacataagtcttttaagtttg 18020027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 25848541 - 25848503
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  25848541 tttaagttattttggtcacacatatgtcctttaagtttg 25848503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 25848602 - 25848512
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    ||||||||||||||  |||||||||||||||| || ||| |  ||| ||||| ||||||  |||||||||||| ||||||| ||| |||||    
T  25848602 ttttaagttattttaatcacacataagtcctttaaattttaggtttgtaacacattggtcctttaagttattttggtcacacatatgtcct 25848512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 26976539 - 26976501
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||||||||||||||||||| || |||||||    
T  26976539 tttaagttattttggtcacacataagtcatttaagtttg 26976501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 36375105 - 36375019
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttatttgggtcacaaataagt 118  Q
    ||||||||||||||| |||  |||||||  || |||||||| |||||||| | ||||   ||||| |||||| ||||||||||||||    
T  36375105 ttttaagttattttgatcatgcataagttttttaagtttgagatttataatagattgacctttaaattattttggtcacaaataagt 36375019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 36667323 - 36667285
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||||||||||||||||||| || |||||||    
T  36667323 tttaagttattttggtcacacataagtcttttaagtttg 36667285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 40286332 - 40286370
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  40286332 tttaagttattttggtcacacagaagtcctttaagtttg 40286370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 41 - 71
Target Start/End: Complemental strand, 42866126 - 42866096
Alignment:
Q  41 attttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||||||||||||||||||||||    
T  42866126 attttggtcacacataagtccttcaagtttg 42866096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 47891363 - 47891325
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||||||||||||||||||| || |||||||    
T  47891363 tttaagttattttggtcacacataagtcttttaagtttg 47891325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 26724265 - 26724229
Alignment:
Q  23 acagattagttttaagttattttggtcacacataagt 59  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  26724265 acagattagttttaagttattttggtcatacacaagt 26724229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 26724313 - 26724238
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttatttgggtca 109  Q
    ||||||||||||| ||||||||||||||||| || |||||  | | ||||| ||| | ||||||||||||| |||||    
T  26724313 tttaagttattttcgtcacacataagtcctttaaatttgaggtctctaacagattag-ttttaagttattttggtca 26724238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 39714693 - 39714633
Alignment:
Q  4 tttaagtttgagatttatgacagattagt-tttaagttattttggtcacacataagtcctt 63  Q
    |||||||||||| ||| | |||||||  | ||||||||||||||||||||||||| |||||    
T  39714693 tttaagtttgaggtttttaacagattgatgtttaagttattttggtcacacataaatcctt 39714633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 43650017 - 43650057
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttga 72  Q
    |||||||||||||| ||||||||||| ||||| ||||||||    
T  43650017 ttttaagttattttcgtcacacataaatcctttaagtttga 43650057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 29710354 - 29710433
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcaca 111  Q
    |||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||  |||||||||||| |||||||    
T  29710354 tttaagttattttggtcacatataagtcctttaagtttgatatttgtaacatattggtcctttaagttattttggtcaca 29710433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 42313095 - 42313007
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtc 119  Q
    |||||||||||||||||||||||||||||||| || |||||||||| ||||| ||||||  ||||| |||||| ||||||| |||||||    
T  42313095 ttttaagttattttggtcacacataagtcctttaaatttgatatttgtaacaaattggtcctttaaattattttggtcacacataagtc 42313007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 27576634 - 27576545
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    |||||||||||||||||||||||||||| || ||||||||||||| ||||  ||||||  |||| ||||||| ||||||| |||||||||    
T  27576634 tttaagttattttggtcacacataagtcatttaagtttgatatttgtaactgattggtcctttaggttattttggtcacacataagtcct 27576545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 3 - 121
Target Start/End: Original strand, 11975450 - 11975570
Alignment:
Q  3 ttttaagtttgagatttatgacagattagtttt-aagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagtta 100  Q
    ||||||||||||| ||| | | | ||||||||| |||||||||| | ||||||||||||||| ||||||||  ||| |||||||||| |  |||||||||    
T  11975450 ttttaagtttgaggtttgtaataaattagtttttaagttatttttgacacacataagtcctttaagtttgaggtttgtaacatattgatcctttaagtta 11975549  T
Q  101 tttgggtcacaaataagtcct 121  Q
    ||  ||||||| |||||||||    
T  11975550 ttgtggtcacacataagtcct 11975570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 31453116 - 31453046
Alignment:
Q  4 tttaagtttgagatttatgacagattagtt--ttaagttattttggtcacacataagtccttcaagtttga 72  Q
    |||||||||||| ||| | |||||||||||  |||||||||||| ||||||||||||||||| ||||||||    
T  31453116 tttaagtttgaggtttgtaacagattagttatttaagttatttttgtcacacataagtcctttaagtttga 31453046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 27280912 - 27280823
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    ||||||||||||||||||||||||||| ||| ||||||||  || |||||| |||| |  |||||||||||| ||| ||| |||||||||    
T  27280912 tttaagttattttggtcacacataagtactttaagtttgaggttcataacaaattgatcctttaagttattttggtaacacataagtcct 27280823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 42312793 - 42312850
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt 90  Q
    ||||||||||||||||||||||||||||||| |||||||| |||| ||| | ||||||    
T  42312793 tttaagttattttggtcacacataagtcctttaagtttgagatttgtaatagattggt 42312850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 30662188 - 30662244
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattg 88  Q
    ||||||||||||||| | |||||||||||||| |||||||| |||||||||| ||||    
T  30662188 ttttaagttattttgattacacataagtcctttaagtttgagatttataacagattg 30662244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 6222113 - 6222198
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtt-tttaagttatttgggtcacaaataag 117  Q
    |||||||||||||| ||||||||||||| ||| |||||| | |||| ||||| ||| ||| |||||||||||| ||||||| |||||    
T  6222113 ttttaagttattttagtcacacataagt-ctttaagtttaaaatttgtaacagattagttatttaagttattttggtcacacataag 6222198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 29019342 - 29019380
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  29019342 tttaagttattttggtcacacataagtcctttaagtttg 29019380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 44294075 - 44293989
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagt 118  Q
    ||||| |||||||||||||||||||||| || | ||||||  ||| ||||| |||| |  |||||||||||| ||||||||||||||    
T  44294075 tttaaattattttggtcacacataagtcttttacgtttgaggtttgtaacagattgatcctttaagttattttggtcacaaataagt 44293989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 4048236 - 4048293
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt 90  Q
    ||||||||||||||||||||||||||| ||| |||| |||  ||| ||||||||||||    
T  4048236 tttaagttattttggtcacacataagttctttaagtctgaggtttgtaacatattggt 4048293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 6694773 - 6694736
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagttt 70  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  6694773 tttaagttattttggtcacacataagtcctttaagttt 6694736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 11975775 - 11975655
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagtta 100  Q
    ||||||||||||||||   ||||||| ||  ||||||||||||| || ||| |||||||||| ||||||||  ||| ||||  ||||||  |||||||||    
T  11975775 tttaagtttgagatttgaaacagattggtcctttaagttatttttgtaacagataagtcctttaagtttgaggtttgtaactgattggtcctttaagtta 11975676  T
Q  101 tttgggtcacaaataagtcct 121  Q
    |||  |||||| |||||||||    
T  11975675 tttttgtcacacataagtcct 11975655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 119
Target Start/End: Complemental strand, 29710624 - 29710536
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtc 119  Q
    ||||| ||||||||||| ||||||||||| || |||||||| |||| ||||  ||||||  ||||||||||||  |||||| |||||||    
T  29710624 ttttaggttattttggtaacacataagtcatttaagtttgagatttgtaacggattggtcctttaagttattttcgtcacacataagtc 29710536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 30869703 - 30869632
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttattt 103  Q
    |||||||||||||||||| |||||||| ||| ||||||||  ||| ||||| ||||||  ||||||||||||    
T  30869703 tttaagttattttggtcatacataagttctttaagtttgaggtttgtaacagattggtcctttaagttattt 30869632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 4048456 - 4048418
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||||||| |||||||||||||| |||||||    
T  4048456 tttaagttattttggttacacataagtcctttaagtttg 4048418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 27576574 - 27576536
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  27576574 tttaggttattttggtcacacataagtcctttaagtttg 27576536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 29710594 - 29710525
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||||||| | || |||| ||  ||||||||||||| |||||||||||||| || |||||||    
T  29710594 tttaagtttgagatttgtaacggattggtcctttaagttattttcgtcacacataagtcatttaagtttg 29710525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 3198258 - 3198331
Alignment:
Q  46 ggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagt 118  Q
    |||||||||||||| ||| ||||||||  ||| ||||| |||||| ||||||||||||| |||| || ||||||    
T  3198258 ggtcacacataagttctttaagtttgaggtttgtaacaaattggtcttttaagttattttggtcccacataagt 3198331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 6222142 - 6222198
Alignment:
Q  4 tttaagtttgagatttatgacagattagtt--ttaagttattttggtcacacataag 58  Q
    ||||||||| | |||| | |||||||||||  |||||||||||||||||||||||||    
T  6222142 tttaagtttaaaatttgtaacagattagttatttaagttattttggtcacacataag 6222198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 11975541 - 11975578
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagttt 70  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  11975541 tttaagttattgtggtcacacataagtcctttaagttt 11975578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 27280852 - 27280815
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagttt 70  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  27280852 tttaagttattttggtaacacataagtccttgaagttt 27280815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 29710414 - 29710470
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt 90  Q
    ||||||||||||||||||||| ||||| ||| ||||||||||||| ||| | ||||||    
T  29710414 tttaagttattttggtcacacttaagt-ctttaagtttgatatttgtaatagattggt 29710470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Original strand, 30869446 - 30869487
Alignment:
Q  36 aagttattttggtcacacataagtccttcaagtttgatattt 77  Q
    ||||||||||||| ||||| |||||||| |||||||||||||    
T  30869446 aagttattttggttacacacaagtcctttaagtttgatattt 30869487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 6694808 - 6694744
Alignment:
Q  58 gtccttcaagtttgatatttataacatattggtt-tttaagttatttgggtcacaaataagtcct 121  Q
    |||||| ||||||||  ||| ||||||||||||  |||||||||||| ||||||| |||||||||    
T  6694808 gtcctttaagtttgaggtttgtaacatattggtcctttaagttattttggtcacacataagtcct 6694744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 26186003 - 26185963
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgat 73  Q
    ||||| ||||||||||||||||||||||||| ||| |||||    
T  26186003 tttaaattattttggtcacacataagtcctttaagattgat 26185963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 161708 - 161619
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    ||||||||||||||||||||||||||||||| || |||||||||| ||||| ||||||  |||| ||||||| ||||||| |||||||||    
T  161708 tttaagttattttggtcacacataagtcctttaaatttgatatttgtaacagattggtcctttaggttattttggtcacacataagtcct 161619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 161407 - 161527
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagtta 100  Q
    |||||||||||| ||| | ||||||| ||  ||||| ||||||||||||||||||||||||| |||||||| |||| ||||| ||||||  ||||| |||    
T  161407 tttaagtttgaggtttgtaacagattggtcctttaacttattttggtcacacataagtcctttaagtttgagatttgtaacagattggtcctttaactta 161506  T
Q  101 tttgggtcacaaataagtcct 121  Q
    |||  |||||| |||||||||    
T  161507 tttttgtcacacataagtcct 161527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 161467 - 161536
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||||||| | ||||||| ||  ||||| ||||||| ||||||||||||||||| |||||||    
T  161467 tttaagtttgagatttgtaacagattggtcctttaacttatttttgtcacacataagtcctttaagtttg 161536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 161648 - 161610
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  161648 tttaggttattttggtcacacataagtcctttaagtttg 161610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 42)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 7246026 - 7246115
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    |||||||||||||||||| |||||||||||| ||||||||||||| ||||| ||||||  |||||||||||| ||| ||| |||||||||    
T  7246026 tttaagttattttggtcagacataagtcctttaagtttgatatttgtaacaaattggtcgtttaagttattttggttacacataagtcct 7246115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 116
Target Start/End: Original strand, 40395102 - 40395217
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtt-tttaagtta 100  Q
    |||||||||||||||| | ||||||| ||  |||| |||||||| |||||| |||||||||| ||||||||  ||| ||||||||| ||| |||||||||    
T  40395102 tttaagtttgagatttgttacagattggtcctttaggttatttttgtcacatataagtcctttaagtttgaggtttgtaacatattagttctttaagtta 40395201  T
Q  101 tttgggtcacaaataa 116  Q
    ||| ||||||| ||||    
T  40395202 ttttggtcacacataa 40395217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 40146952 - 40147074
Alignment:
Q  1 tcttttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagt 98  Q
    ||||||||||||||| ||| ||| ||||| ||  ||||||||||||||||||||||||||||||| ||||||||  ||| ||| | |||| |  ||| ||    
T  40146952 tcttttaagtttgaggtttgtgatagatttgtcatttaagttattttggtcacacataagtccttgaagtttgaggtttgtaatagattgatccttaggt 40147051  T
Q  99 tatttgggtcacaaataagtcct 121  Q
    ||||| ||||||| || ||||||    
T  40147052 tattttggtcacacatgagtcct 40147074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 41083088 - 41083177
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    ||||||||||||| |||||| |||||||||| ||||||||  ||| ||||||||||||  |||||||||||| | ||||| |||||||||    
T  41083088 tttaagttatttttgtcacatataagtcctttaagtttgaagtttgtaacatattggtcctttaagttattttgatcacacataagtcct 41083177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 41083388 - 41083268
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagtta 100  Q
    |||||||||||| ||| | ||||||| ||  |||||||||||||||||||| ||| ||| || ||||||||  ||  ||||| |||||| ||||||||||    
T  41083388 tttaagtttgaggtttgtaacagattggtcctttaagttattttggtcacatatatgtcatttaagtttgaggttcgtaacagattggtcttttaagtta 41083289  T
Q  101 tttgggtcacaaataagtcct 121  Q
    ||| ||||||| |||||||||    
T  41083288 tttcggtcacacataagtcct 41083268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 45038479 - 45038390
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    ||||||||||||| |||||| |||||||||| ||||||||  ||| ||||| ||||||  |||||||||||| ||||||| |||||||||    
T  45038479 tttaagttatttttgtcacaaataagtcctttaagtttgaggtttgtaacagattggtcctttaagttattttggtcacacataagtcct 45038390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 45038281 - 45038337
Alignment:
Q  34 ttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt 90  Q
    ||||||||||| |||||||||||||||||| |||||||| |||||||||| ||||||    
T  45038281 ttaagttatttcggtcacacataagtcctttaagtttgagatttataacagattggt 45038337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 2470211 - 2470124
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtc 119  Q
    |||||||||||||||||||| |||||||||| || |||||  ||| ||| ||||||||  |||||||||||| ||||||| |||||||    
T  2470211 tttaagttattttggtcacatataagtcctttaaatttgaggtttgtaatatattggtcctttaagttattttggtcacacataagtc 2470124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 24684320 - 24684254
Alignment:
Q  4 tttaagtttgagatttatgacagattagttttaagttattttggtcacacataagtccttcaagttt 70  Q
    |||||||||||| ||| | ||||||| ||||||||||||||  ||||||||||||||||| ||||||    
T  24684320 tttaagtttgaggtttgtaacagattggttttaagttatttcagtcacacataagtcctttaagttt 24684254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 45038450 - 45038381
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||| ||| | ||||||| ||  ||||||||||||||||||||||||||||||| |||||||    
T  45038450 tttaagtttgaggtttgtaacagattggtcctttaagttattttggtcacacataagtcctttaagtttg 45038381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 9999338 - 9999407
Alignment:
Q  48 tcacacataagtccttcaa-gtttgatatttataacatattggtttttaagttatttgggtcacaaataa 116  Q
    |||||||||||||||| || ||||||| ||| ||||||||||||||||||||||| | ||||||| ||||    
T  9999338 tcacacataagtcctttaaagtttgatgtttctaacatattggtttttaagttatattggtcacacataa 9999407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 46196144 - 46196233
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    |||||||||||||||||||| |||||||||| ||||||||  ||| ||||| ||||||  |||||| |||||||  | ||||||||||||    
T  46196144 tttaagttattttggtcacaaataagtcctttaagtttgacgtttgtaacaaattggtcctttaagatatttggagctcaaataagtcct 46196233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 53863351 - 53863440
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    |||||||||||||| ||||||||||||| || ||||| || |||| ||||| ||||||  ||||||||||||  |||||| |||||||||    
T  53863351 tttaagttattttgatcacacataagtcatttaagttcgagatttgtaacagattggtcctttaagttattttagtcacacataagtcct 53863440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 81
Target Start/End: Original strand, 24684055 - 24684134
Alignment:
Q  4 tttaagtttgagatttatgacagatta--gttttaagttattttggtcacacataagtccttcaagtttgatatttataa 81  Q
    |||||||||||| ||||| | |||||   ||||||||||||||| |||||| |||| ||||| |||||||||||||||||    
T  24684055 tttaagtttgaggtttataatagattgatgttttaagttatttttgtcacatataaatcctttaagtttgatatttataa 24684134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 2469933 - 2470019
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtc 119  Q
    ||||||||||||||||||||| ||||||||| ||||||||  ||| ||| ||||||||  ||||| |||||| ||||||| |||||||    
T  2469933 tttaagttattttggtcacacctaagtcctttaagtttgagctttgtaatatattggtcctttaaattattt-ggtcacatataagtc 2470019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 2787950 - 2788017
Alignment:
Q  4 tttaagtttgagatttatgacagattagttttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||||||| || ||| | ||| ||| |||||||||||||||||||||||||||||| || |||||||    
T  2787950 tttaagtttaaggtttgtaacatatttgttttaagttattttggtcacacataagtcatttaagtttg 2788017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 7246086 - 7246141
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattg 88  Q
    |||||||||||||||| |||||||||||||| |||||| |||||| ||||| ||||    
T  7246086 tttaagttattttggttacacataagtcctttaagttttatatttgtaacagattg 7246141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 51950563 - 51950602
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  51950563 ttttaagttattttggtcacacataagtcctttaagtttg 51950602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 11884649 - 11884707
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt 90  Q
    |||||||||||||| ||||||||||||||||| ||||||||  ||| ||||| ||||||    
T  11884649 ttttaagttatttttgtcacacataagtcctttaagtttgaggtttgtaacagattggt 11884707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 53863380 - 53863449
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||| ||||||| | ||||||| ||  ||||||||||||| ||||||||||||||||| |||||||    
T  53863380 tttaagttcgagatttgtaacagattggtcctttaagttattttagtcacacataagtcctttaagtttg 53863449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 7246328 - 7246283
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttgatattt 77  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||||    
T  7246328 ttttaagttattttggtcatacataagtcctttaagtttgagattt 7246283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 50290186 - 50290239
Alignment:
Q  4 tttaagtttgagatttatgacagattagttttaagttattttggtcacacataa 57  Q
    |||||||||||| ||| | ||| ||| |||||||||||||||||||||||||||    
T  50290186 tttaagtttgaggtttgttacaaattggttttaagttattttggtcacacataa 50290239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 119
Target Start/End: Original strand, 2787923 - 2788006
Alignment:
Q  35 taagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttatttgggtcacaaataagtc 119  Q
    ||||||||||||||  |||||||||| || |||||| |  ||| ||||||||| | ||||||||||||| ||||||| |||||||    
T  2787923 taagttattttggttgcacataagtcatttaagtttaaggtttgtaacatatttg-ttttaagttattttggtcacacataagtc 2788006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 12698046 - 12698010
Alignment:
Q  23 acagattagttttaagttattttggtcacacataagt 59  Q
    |||||||| ||||||||||||||||||||||||||||    
T  12698046 acagattaattttaagttattttggtcacacataagt 12698010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 21322074 - 21322034
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttga 72  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  21322074 ttttaagttattttggtcacatataagtcctttaagtttga 21322034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 103
Target Start/End: Complemental strand, 44057367 - 44057295
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttattt 103  Q
    ||||||||||||||||| ||||||||||| || |||||||| |||| ||| | ||||||  ||||||||||||    
T  44057367 ttttaagttattttggttacacataagtcatttaagtttgagatttgtaataaattggtcatttaagttattt 44057295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 12498713 - 12498752
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  12498713 ttttaagttattttggtcacacataaatcctttaagtttg 12498752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 41083298 - 41083259
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  41083298 ttttaagttatttcggtcacacataagtcctttaagtttg 41083259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 2788198 - 2788160
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagttt 70  Q
    |||||||||||||||||||||||||| ||||| ||||||    
T  2788198 ttttaagttattttggtcacacataaatcctttaagttt 2788160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 12498653 - 12498743
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    |||||||||||||| |||||||||||||| || |||||| |  |||  || |||||| | ||||||||||||| ||||||| |||| ||||    
T  12498653 ttttaagttatttttgtcacacataagtcttttaagtttaaggtttgcaatatattgatcttttaagttattttggtcacacataaatcct 12498743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 12498923 - 12498873
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataaca 83  Q
    |||||||||||||  |||||||||||||||| |||||||| |||| |||||    
T  12498923 tttaagttattttaatcacacataagtcctttaagtttgagatttgtaaca 12498873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 12697114 - 12697156
Alignment:
Q  32 ttttaagttattttggtca-cacataagtccttcaagtttgat 73  Q
    ||||||||||||||||||| ||||||||||||| |||||||||    
T  12697114 ttttaagttattttggtcaccacataagtcctttaagtttgat 12697156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 17231991 - 17232060
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||| ||| | |||||| |||  |||||||||||||| ||||||||||||| || |||||||    
T  17231991 tttaagtttgaggtttgtaacagataagtcttttaagttattttgatcacacataagtcttttaagtttg 17232060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 17236808 - 17236838
Alignment:
Q  33 tttaagttattttggtcacacataagtcctt 63  Q
    |||||||||||||||||||||||||||||||    
T  17236808 tttaagttattttggtcacacataagtcctt 17236838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 26782332 - 26782406
Alignment:
Q  39 ttattttggtcacacataagt-ccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcaca 111  Q
    |||||||  |||||||||||| |||| ||||||||||||| ||||| ||||||  |||||||||||| |||||||    
T  26782332 ttattttaatcacacataagttcctttaagtttgatatttgtaacagattggtcctttaagttattttggtcaca 26782406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 40395162 - 40395231
Alignment:
Q  4 tttaagtttgagatttatgacagattagtt--ttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||| ||| | ||| |||||||  |||||||||||||||||||||||| || || |||||||    
T  40395162 tttaagtttgaggtttgtaacatattagttctttaagttattttggtcacacataaatcttttaagtttg 40395231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 41083148 - 41083186
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  41083148 tttaagttattttgatcacacataagtcctttaagtttg 41083186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 9999591 - 9999506
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtc 119  Q
    ||||||||||||||||||||||| |||  || ||||||||  ||| ||||| ||||||  ||||||||||||  |||||| |||||||    
T  9999591 tttaagttattttggtcacacattagt--tttaagtttgaggtttgtaacagattggtcatttaagttatttttgtcacatataagtc 9999506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 24684379 - 24684262
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttat 101  Q
    |||||||||||| ||||| | ||||| ||  |||||||||||| | | |||| ||||| ||| ||||||||  ||| ||||| ||||||||| |||||||    
T  24684379 tttaagtttgaggtttataatagattggtcttttaagttattt-gattacacgtaagttctttaagtttgaggtttgtaacagattggtttt-aagttat 24684282  T
Q  102 ttgggtcacaaataagtcct 121  Q
    ||  |||||| |||||||||    
T  24684281 ttcagtcacacataagtcct 24684262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 25055883 - 25055954
Alignment:
Q  3 ttttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttga 72  Q
    ||||||||||||| ||| | | ||||| ||  |||||||||||||||| |||||||| ||||| ||||||||    
T  25055883 ttttaagtttgaggtttgtaatagatttgtcctttaagttattttggtgacacataaatcctttaagtttga 25055954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 45038222 - 45038309
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggttt-ttaagttatttgggtcacaaataagtcct 121  Q
    ||||||||||||||||||||  ||||||   |||||||| |  ||||||||| ||||||   ||||||||||| ||||||| |||||||||    
T  45038222 ttttaagttattttggtcacgtataagt---tcaagtttaaggtttataacagattggtccgttaagttatttcggtcacacataagtcct 45038309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 46196452 - 46196365
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattgg 89  Q
    |||||||||||  ||||| |||||| |||  | ||||||||||| |||| |||||||||||| ||||||||  ||| ||||| |||||    
T  46196452 tttaagtttgacgtttataacagataagtcatgtaagttatttttgtcatacataagtcctttaagtttgaggtttgtaacagattgg 46196365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 36217275 - 36217160
Alignment:
Q  4 tttaagtttgagatttatgacagattagttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttattt 103  Q
    |||||||||||| ||| | ||| |||  ||||||||||||||||||||||||||||| || ||||||||  ||| ||||| |||| | ||||| ||||||    
T  36217275 tttaagtttgaggtttgtaacaaattgattttaagttattttggtcacacataagtcttttaagtttgaggtttgtaacagattgatctttaaattattt 36217176  T
Q  104 gggtcacaaataagtc 119  Q
     ||||||| |||||||    
T  36217175 tggtcacacataagtc 36217160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 31630377 - 31630291
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttatttgggtcacaaataagtc 119  Q
    |||||||||||||||||||||| |||||||| || |||||  ||  ||| | ||||||||||||||||||| ||||||| |||||||    
T  31630377 tttaagttattttggtcacacaaaagtcctttaaatttgaggttagtaatagattggtttttaagttattttggtcacacataagtc 31630291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 36694374 - 36694436
Alignment:
Q  1 tcttttaagtttgagatttatgacagattagttttaagttattttggtcacacataagtcctt 63  Q
    |||||| ||||||| |||| | |||||||||||||||||||||||||||||| ||||||||||    
T  36694374 tcttttgagtttgaaatttgtaacagattagttttaagttattttggtcacatataagtcctt 36694436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 1316069 - 1316158
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatat-tggtttttaagttatttgggtcacaaataagtcct 121  Q
    ||||||||||||||||||||||||||||||| | ||||||  ||| |||||||| || | |||||||||||| | || || |||||||||    
T  1316069 tttaagttattttggtcacacataagtcctttatgtttgaggtttgtaacatatatgttctttaagttattttgatcgcacataagtcct 1316158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 9500939 - 9501028
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtt-tttaagttatttgggtcacaaataagtcct 121  Q
    ||||||||||||||||||||| ||||||| | ||||||||  ||| ||||| || | || ||||||||||||  |||||| |||||||||    
T  9500939 tttaagttattttggtcacacttaagtcccttaagtttgaggtttgtaacagatcgcttctttaagttattttagtcacacataagtcct 9501028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 25895250 - 25895182
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagttt 70  Q
    |||||||||||| ||| | ||||||| ||  |||||||||||||||||||||| |||||||| ||||||    
T  25895250 tttaagtttgaggtttgtaacagattggtcctttaagttattttggtcacacaaaagtcctttaagttt 25895182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 36694347 - 36694435
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttatttgggtcacaaataagtcct 121  Q
    ||||||||||| |||||| |||| ||||| ||  ||||||| |||| ||||| ||| ||||| ||||||||| ||||||| |||||||||    
T  36694347 ttttaagttatgttggtcgcacacaagtcttttgagtttgaaatttgtaacagattagtttt-aagttattttggtcacatataagtcct 36694435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 63
Target Start/End: Complemental strand, 3876982 - 3876951
Alignment:
Q  32 ttttaagttattttggtcacacataagtcctt 63  Q
    ||||||||||||||||||||||||||||||||    
T  3876982 ttttaagttattttggtcacacataagtcctt 3876951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 33847736 - 33847697
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttga 72  Q
    ||||||||||||||||||||||||||||||| || |||||    
T  33847736 tttaagttattttggtcacacataagtcctttaaatttga 33847697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 9500999 - 9501037
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  9500999 tttaagttattttagtcacacataagtcctttaagtttg 9501037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 11791842 - 11791804
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  11791842 tttaagttattttggtcacacataagtcctataagtttg 11791804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 25894968 - 25895037
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||||||| | ||| ||| ||  ||||||||||||||||| || |||||||||| |||||||    
T  25894968 tttaagtttgagatttgtaacaaattggtcctttaagttattttggtcgcatataagtcctttaagtttg 25895037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 29379996 - 29379910
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagt 118  Q
    ||||||||||||||| | ||||||| ||||| ||||||||  ||| ||||||||| ||  ||||| |||||| ||||||| ||||||    
T  29379996 tttaagttattttggcctcacataattcctttaagtttgacgtttgtaacatattagtcctttaaattattttggtcacacataagt 29379910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 31630159 - 31630197
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||||||||||||||||||| || |||||||    
T  31630159 tttaagttattttggtcacacataagtcttttaagtttg 31630197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 36694557 - 36694519
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  36694557 tttaaattattttggtcacacataagtcctttaagtttg 36694519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 45388541 - 45388495
Alignment:
Q  1 tcttttaagtttgagatttatgacagattag-ttttaagttattttg 46  Q
    ||||||||||||||||||||| | ||||||| |||||||||||||||    
T  45388541 tcttttaagtttgagatttataatagattagtttttaagttattttg 45388495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 31630070 - 31630186
Alignment:
Q  4 tttaagtttgagatttatgacagattagttt-taagttattttggtcacacataagtccttcaagtttgatatttataacatattggtt-tttaagttat 101  Q
    |||||||||||| ||| | | ||||| |||| ||| ||||||||||||||| |||||| || ||||||||  ||| ||||| |||| |  ||||||||||    
T  31630070 tttaagtttgaggtttgtaatagatttgtttataaattattttggtcacacctaagtcttt-aagtttgaggtttgtaacagattgatcctttaagttat 31630168  T
Q  102 ttgggtcacaaataagtc 119  Q
    || ||||||| |||||||    
T  31630169 tttggtcacacataagtc 31630186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 88
Target Start/End: Original strand, 39442243 - 39442323
Alignment:
Q  10 tttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattg 88  Q
    |||||||||  | ||||||||||  ||||| ||||||| |||||||||||||| || |||||||| |||| ||||| ||||    
T  39442243 tttgagattcgtaacagattagtactttaaattatttttgtcacacataagtcatttaagtttgagatttgtaacaaattg 39442323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 3876768 - 3876832
Alignment:
Q  39 ttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttattt 103  Q
    ||||||||||||||||||||||||| ||| ||||  | | |||||||||| | |||| |||||||    
T  3876768 ttattttggtcacacataagtcctttaagattgaggtctgtaacatattgatctttatgttattt 3876832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 4188657 - 4188693
Alignment:
Q  34 ttaagttattttggtcacacataagtccttcaagttt 70  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  4188657 ttaagttattttggtcacacacaagtcctttaagttt 4188693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 31630319 - 31630291
Alignment:
Q  32 ttttaagttattttggtcacacataagtc 60  Q
    |||||||||||||||||||||||||||||    
T  31630319 ttttaagttattttggtcacacataagtc 31630291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 33847771 - 33847707
Alignment:
Q  58 gtccttcaagtttgatatttataacatattggtt-tttaagttatttgggtcacaaataagtcct 121  Q
    |||||| ||||||||| ||| |||||||||| |  |||||||||||| ||||||| |||||||||    
T  33847771 gtcctttaagtttgatgtttgtaacatattgttcctttaagttattttggtcacacataagtcct 33847707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 36217220 - 36217160
Alignment:
Q  1 tcttttaagtttgagatttatgacagatt-agttttaagttattttggtcacacataagtc 60  Q
    ||||||||||||||| ||| | ||||||| |  ||||| ||||||||||||||||||||||    
T  36217220 tcttttaagtttgaggtttgtaacagattgatctttaaattattttggtcacacataagtc 36217160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 1238 - 1149
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    |||||||||||||||||||||||||||| || ||||||||||||| ||||  ||||||  |||| ||||||| ||||||| |||||||||    
T  1238 tttaagttattttggtcacacataagtcatttaagtttgatatttgtaactgattggtcctttaggttattttggtcacacataagtcct 1149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 1178 - 1140
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  1178 tttaggttattttggtcacacataagtcctttaagtttg 1140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 1173074 - 1173132
Alignment:
Q  3 ttttaagtttgagatttatgacagattagtttt-aagttattttggtcacacataagtc 60  Q
    ||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||    
T  1173074 ttttaagtttgaggtttataacagattagtttttaagttattttggtcacacataagtc 1173132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 40892602 - 40892516
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttatttgggtcacaaataagtc 119  Q
    ||||||||||||||||||||||||||||||| || |||||  ||| ||||| |||||  |||||||||||| | ||||| |||||||    
T  40892602 tttaagttattttggtcacacataagtcctttaaatttgaggtttgtaacagattggactttaagttatttcgatcacacataagtc 40892516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 33650401 - 33650522
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt--ttttaagtt 99  Q
    |||||||||||| ||||| ||||||| ||  |||||||||||||| || |||||||||| || |||||||   | | ||||||||||||  |||||||||    
T  33650401 tttaagtttgaggtttataacagattggtcctttaagttattttgttcccacataagtcatttaagtttgtggtatgtaacatattggtccttttaagtt 33650500  T
Q  100 atttgggtcacaaataagtcct 121  Q
    |||| |||||||  ||||||||    
T  33650501 attttggtcacacgtaagtcct 33650522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 7489962 - 7490032
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttga 72  Q
    |||||||||||| ||| | |||||||| |  ||||||||||||||||||||||||| ||||| ||||||||    
T  7489962 tttaagtttgaggtttgtaacagattaatcatttaagttattttggtcacacataaatcctttaagtttga 7490032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 52913173 - 52913212
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttga 72  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  52913173 tttaagttattttggtcacacataagtcctttaagtttga 52913212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 52913031 - 52913156
Alignment:
Q  1 tcttttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttc-aagtttgatatttataa-catattggtt-ttta 95  Q
    ||||||||||||||  ||| | ||||||||||  ||||||||||||||||||||||||| |||||  ||||||||  ||| ||| || ||||||  ||||    
T  52913031 tcttttaagtttgaagtttgtaacagattagtcctttaagttattttggtcacacataaatccttttaagtttgaggtttgtaaacagattggtcattta 52913130  T
Q  96 agttatttgggtcacaaataagtcct 121  Q
    |||||||  ||||||| |||||||||    
T  52913131 agttattctggtcacacataagtcct 52913156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 2633597 - 2633538
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtcc 61  Q
    |||||||||||| ||| ||||||||| ||  |||||||||||||||||||| ||||||||    
T  2633597 tttaagtttgaggtttgtgacagattggtcatttaagttattttggtcacatataagtcc 2633538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 18981086 - 18981122
Alignment:
Q  35 taagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||||||||||||||||||||||||||| |||||||    
T  18981086 taagttattttggtcacacataagtcctttaagtttg 18981122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 121
Target Start/End: Complemental strand, 18608915 - 18608793
Alignment:
Q  2 cttttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagt 98  Q
    ||||||||||| || ||||| ||| ||| ||  |||||| ||||||| ||||||||||||| || | ||||||| ||| ||||| |||| | ||||||||    
T  18608915 cttttaagtttaaggtttataacaaatttgtcctttaagctattttgatcacacataagtcgtttacgtttgatgtttgtaacagattgatattttaagt 18608816  T
Q  99 tatttgggtcacaaataagtcct 121  Q
    ||||| | ||| | |||||||||    
T  18608815 tattttgatcatagataagtcct 18608793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 33650492 - 33650531
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||||||||||||| ||||||||| |||||||    
T  33650492 ttttaagttattttggtcacacgtaagtcctttaagtttg 33650531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 1173078 - 1173132
Alignment:
Q  65 aagtttgatatttataacatattggtttttaagttatttgggtcacaaataagtc 119  Q
    ||||||||  ||||||||| ||| ||||||||||||||| ||||||| |||||||    
T  1173078 aagtttgaggtttataacagattagtttttaagttattttggtcacacataagtc 1173132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 18205016 - 18204930
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttatttgggtcacaaataagt 118  Q
    |||||||||||||| |||| |||||  || || ||||||||  ||| |||||||||| ||||||  |||||| ||||||| ||||||    
T  18205016 ttttaagttattttagtcatacatagatcttttaagtttgaggtttgtaacatattgatttttagattattttggtcacacataagt 18204930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 18608672 - 18608710
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||||||||||||||||||| ||||||||| |||||||    
T  18608672 tttaagttattttggtcacacttaagtcctttaagtttg 18608710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 34173316 - 34173381
Alignment:
Q  57 agtccttcaagtttgatatttataacatattggtt-tttaagttatttgggtcacaaataagtcct 121  Q
    ||||||| ||||||||| ||| ||||| ||||||  |||||||||||| ||| |||||||||||||    
T  34173316 agtcctttaagtttgatgtttgtaacagattggtcctttaagttattttggttacaaataagtcct 34173381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 18608629 - 18608701
Alignment:
Q  50 acacataagtccttcaagtttgatatttataacatattggtt-tttaagttatttgggtcacaaataagtcct 121  Q
    |||||||||||||| ||||||||  ||| ||||| |||| || |||||||||||| |||||||  ||||||||    
T  18608629 acacataagtcctttaagtttgaggtttgtaacagattgattctttaagttattttggtcacacttaagtcct 18608701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 6220486 - 6220397
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    ||||||||||||| ||||||||||||| ||| |||||||| |||| ||||| ||||||  |||||||||||  ||||||| |||||||||    
T  6220486 tttaagttatttttgtcacacataagttctttaagtttgagatttgtaacagattggtactttaagttattgtggtcacacataagtcct 6220397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 41151439 - 41151528
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    |||||||||||||| |||||||||||||||| ||||||||  ||  ||||| ||||||  |||||||||||| ||||||| |||||||||    
T  41151439 tttaagttattttgatcacacataagtcctttaagtttgagtttagtaacagattggtcctttaagttattttggtcacacataagtcct 41151528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 41151741 - 41151680
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtcctt 63  Q
    |||||||||||| ||| | ||||||||||  |||||||||||||||||||||||||||||||    
T  41151741 tttaagtttgaggtttgtaacagattagtcctttaagttattttggtcacacataagtcctt 41151680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 6220457 - 6220389
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagttt 70  Q
    |||||||||||||||| | ||||||| ||  ||||||||||| ||||||||||||||||||| ||||||    
T  6220457 tttaagtttgagatttgtaacagattggtactttaagttattgtggtcacacataagtcctttaagttt 6220389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 24909738 - 24909618
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagtta 100  Q
    |||||||||||||||| | ||| ||| ||  |||||||||||||| |||||||||||||||| ||||||||  ||| || || ||||||  ||||| |||    
T  24909738 tttaagtttgagatttgtaacaaattggtcctttaagttattttgatcacacataagtcctttaagtttgaggtttgtagcagattggtcctttaaatta 24909639  T
Q  101 tttgggtcacaaataagtcct 121  Q
    ||| ||||||  |||||||||    
T  24909638 ttttggtcacgcataagtcct 24909618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 27052697 - 27052613
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataa 116  Q
    ||||||||||||| ||| ||||||||||||| ||||||||  ||||||||| ||||||  |||||||||||| | ||||| ||||    
T  27052697 tttaagttatttttgtcgcacataagtcctttaagtttgaggtttataacagattggtcctttaagttattttgatcacacataa 27052613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 20209563 - 20209477
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagt 118  Q
    ||||| |||||||||||||||||||||| || | ||||||  ||| ||||| |||| |  |||||||||||| ||||||||||||||    
T  20209563 tttaaattattttggtcacacataagtcttttacgtttgaggtttgtaacagattgatcctttaagttattttggtcacaaataagt 20209477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 20229271 - 20229185
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagt 118  Q
    ||||| |||||||||||||||||||||| || | ||||||  ||| ||||| |||| |  |||||||||||| ||||||||||||||    
T  20229271 tttaaattattttggtcacacataagtcttttacgtttgaggtttgtaacagattgatcctttaagttattttggtcacaaataagt 20229185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 24083334 - 24083264
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttattt 103  Q
    |||||||||||||| ||||||||||| | || ||||||||  ||| ||||| |||| ||||||||||||||    
T  24083334 tttaagttattttgatcacacataaggcttttaagtttgaggtttgtaacagattgatttttaagttattt 24083264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 27052502 - 27052560
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtt 91  Q
    |||||||||||| |||||||||||||||||| |||||||| |||| ||| | |||||||    
T  27052502 tttaagttatttcggtcacacataagtcctttaagtttgagatttgtaatagattggtt 27052560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 27127968 - 27128006
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  27127968 tttaagttattttggtcacacataagtcctttaagtttg 27128006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 9400130 - 9400041
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    ||||||||||||||||||||||||| | |||  |||||||  ||| || ||| |||||  |||||||||||| ||||||| |||||||||    
T  9400130 tttaagttattttggtcacacataaattctttgagtttgaggtttgtagcatgttggtcctttaagttattttggtcacacataagtcct 9400041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 27052443 - 27052531
Alignment:
Q  34 ttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtt-tttaagttatttgggtcacaaataagtcct 121  Q
    |||||||||||| |||||| ||||||| || |||||| |  ||| ||||| ||||||  |||||||||||| ||||||| |||||||||    
T  27052443 ttaagttattttagtcacatataagtcatttaagtttaaggtttgtaacacattggtcctttaagttatttcggtcacacataagtcct 27052531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 29427999 - 29427960
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttg 71  Q
    ||||||||||||||||||| |||||||||||| |||||||    
T  29427999 ttttaagttattttggtcatacataagtcctttaagtttg 29427960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 63
Target Start/End: Complemental strand, 9400070 - 9400040
Alignment:
Q  33 tttaagttattttggtcacacataagtcctt 63  Q
    |||||||||||||||||||||||||||||||    
T  9400070 tttaagttattttggtcacacataagtcctt 9400040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 27127911 - 27127997
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtt-tttaagttatttgggtcacaaataagtcct 121  Q
    |||||||||||||| ||||||||||||  || ||||||||  ||| ||||| |||| || |||||||||||| ||||||| |||||||||    
T  27127911 tttaagttattttgatcacacataagt--tttaagtttga-gtttgtaacagattgattctttaagttattttggtcacacataagtcct 27127997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 27128209 - 27128092
Alignment:
Q  4 tttaagtttgagatttatgacagattagttttaag-ttattttggtcacacataagtccttcaagtttgatatttataacatattggt--ttttaagtta 100  Q
    |||||||||||| ||| | | ||||| ||||| || |||||||| ||||||| |||||||| |||||| |  ||| ||||| |||| |  ||||||||||    
T  27128209 tttaagtttgaggtttgtaatagattggtttttaggttattttgatcacacacaagtcctttaagtttaaggtttctaacaaattgatctttttaagtta 27128110  T
Q  101 tttgggtcacaaataagt 118  Q
    ||| ||||||| ||||||    
T  27128109 ttttggtcacacataagt 27128092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 41151499 - 41151529
Alignment:
Q  33 tttaagttattttggtcacacataagtcctt 63  Q
    |||||||||||||||||||||||||||||||    
T  41151499 tttaagttattttggtcacacataagtcctt 41151529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 71
Target Start/End: Complemental strand, 41151649 - 41151611
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||| |||||||||||||||||||||| |||||||    
T  41151649 tttaagttcttttggtcacacataagtcctttaagtttg 41151611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 15563877 - 15563917
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttga 72  Q
    |||||||||||||| |||||||||||||| || ||||||||    
T  15563877 ttttaagttattttagtcacacataagtcttttaagtttga 15563917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 27052668 - 27052613
Alignment:
Q  4 tttaagtttgagatttatgacagattagt--tttaagttattttggtcacacataa 57  Q
    |||||||||||| ||||| ||||||| ||  |||||||||||||| ||||||||||    
T  27052668 tttaagtttgaggtttataacagattggtcctttaagttattttgatcacacataa 27052613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 121
Target Start/End: Original strand, 12054 - 12171
Alignment:
Q  4 tttaagtttgagatttatgacagattagttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttattt 103  Q
    |||||||||||| ||| | | | ||| |||| |||||||||||||||||||||   |||| |||||||| |||| ||||| ||||||  |||||||||||    
T  12054 tttaagtttgaggtttgtaataaattggtttcaagttattttggtcacacatataccctttaagtttgagatttgtaacaaattggtccttaagttattt 12153  T
Q  104 gggtcacaaataagtcct 121  Q
      |||||| | |||||||    
T  12154 ttgtcacacacaagtcct 12171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 12377 - 12278
Alignment:
Q  4 tttaagtttgagatttatgacagattagttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggtttttaagttattt 103  Q
    |||||||||||| ||| | | |||||  ||||||||||||||| ||||| |||||||  | ||||||||  ||| ||||| |||||| ||||| ||||||    
T  12377 tttaagtttgaggtttgtaatagattgattttaagttattttgatcacatataagtcaattaagtttgaggtttgtaacagattggtctttaacttattt 12278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 12112 - 12180
Alignment:
Q  4 tttaagtttgagatttatgacagattagtt-ttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||||||| | ||| ||| ||  |||||||||||| |||||||| |||||||| |||||||    
T  12112 tttaagtttgagatttgtaacaaattggtccttaagttatttttgtcacacacaagtcctttaagtttg 12180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 21764 - 21725
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttg 71  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  21764 ttttaagttattttggtcacacataaatcctttaagtttg 21725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 21554 - 21604
Alignment:
Q  33 tttaagttattttggtcacacataagtccttcaagtttgatatttataaca 83  Q
    |||||||||||||  |||||||||||||||| |||||||| |||| |||||    
T  21554 tttaagttattttaatcacacataagtcctttaagtttgagatttgtaaca 21604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 21824 - 21734
Alignment:
Q  32 ttttaagttattttggtcacacataagtccttcaagtttgatatttataacatattggt-ttttaagttatttgggtcacaaataagtcct 121  Q
    |||||||||||||| |||||||||||||| || |||||| |  |||  || |||||| | ||||||||||||| ||||||| |||| ||||    
T  21824 ttttaagttatttttgtcacacataagtcttttaagtttaaggtttgcaatatattgatcttttaagttattttggtcacacataaatcct 21734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University