View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8135_low_5 (Length: 475)

Name: NF8135_low_5
Description: NF8135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8135_low_5
NF8135_low_5
[»] chr4 (4 HSPs)
chr4 (13-475)||(2897289-2897751)
chr4 (13-423)||(2886675-2887087)
chr4 (14-264)||(2877069-2877319)
chr4 (342-436)||(2876657-2876751)
[»] chr2 (6 HSPs)
chr2 (13-264)||(44223211-44223462)
chr2 (13-264)||(44234033-44234284)
chr2 (19-264)||(44211055-44211300)
chr2 (104-205)||(43457695-43457796)
chr2 (363-442)||(44211408-44211487)
chr2 (363-442)||(44234392-44234471)
[»] chr7 (12 HSPs)
chr7 (356-438)||(39337952-39338034)
chr7 (356-438)||(39564804-39564886)
chr7 (356-438)||(39349129-39349211)
chr7 (358-438)||(39547952-39548032)
chr7 (356-443)||(39365597-39365684)
chr7 (356-443)||(39538586-39538673)
chr7 (364-440)||(39575466-39575543)
chr7 (356-437)||(39589695-39589776)
chr7 (14-198)||(39589363-39589547)
chr7 (101-247)||(39564401-39564547)
chr7 (356-431)||(39622463-39622538)
chr7 (114-222)||(39575225-39575333)
[»] chr1 (2 HSPs)
chr1 (122-223)||(2149030-2149131)
chr1 (101-223)||(2160992-2161114)
[»] chr3 (2 HSPs)
chr3 (113-223)||(49773065-49773175)
chr3 (98-192)||(25523358-25523452)
[»] chr8 (1 HSPs)
chr8 (128-198)||(4501168-4501238)


Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 13 - 475
Target Start/End: Original strand, 2897289 - 2897751
Alignment:
Q  13 atggacatcattctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaatttttatggtgccgtcgatataaccaccg 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2897289 atggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaatttttatggtgccatcgatataaccaccg 2897388  T
Q  113 gttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgagaacaccaggcctaaatgcaccactaacac 212  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2897389 gtttttctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaatgctgtgagaacaccaggcctaaatgcaccactaacac 2897488  T
Q  213 ccttcaaaagtactaatctatcctctactacaccttgaaccttcatttcctgtcatttagatactcaatagttaaggttcaaagttaactgaaaacattg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2897489 ccttcaaaagtactaatctatcctctactacaccttgaaccttcatttcctgtcatttagatactcaatagttaaggttcaaagttaactgaacacattg 2897588  T
Q  313 tttgaaaatcaaatcttcaattataacttactttgaaaatgacttacctgtggcatgtcaacagaatatataacttggtcaaaggttatagaatgtggtt 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||    
T  2897589 tttgaaaatcaaatcttcaattataacttactttgaaaatgacttacctgtggcatgtcaactgaatatacaacttggtcaaagattatagaatgtggtt 2897688  T
Q  413 caaaaggaagactcattccccttttctttctgatacttcagcacacaacatattctcctaaac 475  Q
    ||||||||||| |||||||||||||||||||| | ||  ||| ||||||||||||||||||||    
T  2897689 caaaaggaagaatcattccccttttctttctgttgctggagctcacaacatattctcctaaac 2897751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 423
Target Start/End: Complemental strand, 2887087 - 2886675
Alignment:
Q  13 atggacatcattctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaatttttatggtgccgtcgatataaccaccg 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| || |||||||||||| | ||||| |||||||||||     
T  2887087 atggatatcattctgctcacaataaccagagattcgagcaaacgtttcttgttttttagggtacccagaaatttttatgctcccgtcaatataaccacca 2886988  T
Q  113 gttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgagaacaccaggcctaaatgcaccactaacac 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2886987 gttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaggctgtgagaacaccaggcctaaatgcaccactaacac 2886888  T
Q  213 ccttcaaaagtactaatctatcctctactacaccttgaaccttcatttcctgtcatttagatactcaatagttaaggttcaaagttaactgaaaacattg 312  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||| || |||||  ||||| ||||||||| ||||||||||| |||||||||    
T  2886887 ccttcaaaagtactaatctatcctctagtaccccttgaaccttcatttcctgccaattagaatctcaagagttaaggtccaaagttaactaaaaacattg 2886788  T
Q  313 tttgaaaatcaaatcttcaattataacttactttgaaaa--tgacttacctgtggcatgtcaacagaatatataacttggtcaaaggttatagaatgtgg 410  Q
    |||||||| |||||||| |||| |||   ||||| | ||  | ||||||||||||||||||||||||||||| ||| | |||||||| ||||||||||||    
T  2886787 tttgaaaaccaaatcttaaattgtaaaaaacttttataatctcacttacctgtggcatgtcaacagaatatacaacatcgtcaaaggctatagaatgtgg 2886688  T
Q  411 ttcaaaaggaaga 423  Q
    |||||||||||||    
T  2886687 ttcaaaaggaaga 2886675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 14 - 264
Target Start/End: Complemental strand, 2877319 - 2877069
Alignment:
Q  14 tggacatcattctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaatttttatggtgccgtcgatataaccaccgg 113  Q
    |||| |||||||||||||||||| |||||||||| |||||| ||||||||  ||||| |||| || |||||||||||| | || || ||||||||||  |    
T  2877319 tggatatcattctgctcacaatagccagagattctagcaaatgtttcttgctttttagggtaaccagaaatttttatgctcccatcaatataaccactag 2877220  T
Q  114 ttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgagaacaccaggcctaaatgcaccactaacacc 213  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| ||    
T  2877219 ttttcctaccagccaatacatccatcaaagtagttttaccagctccactaacacccatcaaagctgtgagaacaccaggtctaaatgcaccactaactcc 2877120  T
Q  214 cttcaaaagtactaatctatcctctactacaccttgaaccttcatttcctg 264  Q
    ||||||||| ||||  ||||||||||  ||||||||| | |||||||||||    
T  2877119 cttcaaaagcactagcctatcctctatcacaccttgatctttcatttcctg 2877069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 436
Target Start/End: Complemental strand, 2876751 - 2876657
Alignment:
Q  342 actttgaaaatgacttacctgtggcatgtcaacagaatatataacttggtcaaaggttatagaatgtggttcaaaaggaagactcattccccttt 436  Q
    |||| ||||||||||||| ||||||| ||||||||| |||| || || |||||| || ||||||| |||||||||||| |||  |||||||||||    
T  2876751 acttcgaaaatgacttacttgtggcacgtcaacagagtatacaatttcgtcaaatgtgatagaatatggttcaaaaggtagaaccattccccttt 2876657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 44223211 - 44223462
Alignment:
Q  13 atggacatcattctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaatttttatggtgccgtcgatataaccaccg 112  Q
    ||||| ||||||||||||||| || ||||| |||| |||||| ||||||||  ||||| |||| || ||||  || |||   || || ||||| |||||     
T  44223211 atggatatcattctgctcacagtagccagaaattctagcaaatgtttcttgctttttagggtacccagaaaccttgatgtctccatcaatatatccacct 44223310  T
Q  113 gttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgagaacaccaggcctaaatgcaccactaacac 212  Q
    |||||||||||||||| ||||||||| | ||| ||||||||||||||||| || ||||| ||||||||||||||||| ||||| ||||||||||||||||    
T  44223311 gttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaatgcaccactaacac 44223410  T
Q  213 ccttcaaaagtactaatctatcctctactacaccttgaaccttcatttcctg 264  Q
    |||||||||| |||||||| || |||   ||||||||  |||||||||||||    
T  44223411 ccttcaaaagcactaatctgtcttctctaacaccttgctccttcatttcctg 44223462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 13 - 264
Target Start/End: Original strand, 44234033 - 44234284
Alignment:
Q  13 atggacatcattctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaatttttatggtgccgtcgatataaccaccg 112  Q
    ||||| ||||||||||||||| ||||| ||||||| |||||| ||||||||  ||||| | || || ||||  || |||   || || ||||| |||||     
T  44234033 atggatatcattctgctcacagtaaccggagattctagcaaatgtttcttgctttttaggatacccagaaaccttgatgtctccatcaatatatccacct 44234132  T
Q  113 gttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgagaacaccaggcctaaatgcaccactaacac 212  Q
    |||||||||||||||| ||||||||| | ||| ||||||||||||||||| || ||||| ||||| || || ||||||||||| ||||| ||||||||||    
T  44234133 gttttcctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagccgtaagtacaccaggcctgaatgcgccactaacac 44234232  T
Q  213 ccttcaaaagtactaatctatcctctactacaccttgaaccttcatttcctg 264  Q
    |||||||||| |||||||| ||||||   ||||||||  |||||||||||||    
T  44234233 ccttcaaaagcactaatctgtcctctgtaacaccttgctccttcatttcctg 44234284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 264
Target Start/End: Original strand, 44211055 - 44211300
Alignment:
Q  19 atcattctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaatttttatggtgccgtcgatataaccaccggttttc 118  Q
    ||||||||| ||||| || ||||| |||| |||||| ||||||||  ||||| |||| || ||||  || |||   || || ||||| ||||| ||||||    
T  44211055 atcattctgttcacagtagccagatattctagcaaatgtttcttgctttttagggtacccagaaaccttgatgtctccatcaatatatccacctgttttc 44211154  T
Q  119 ctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgagaacaccaggcctaaatgcaccactaacacccttca 218  Q
    |||||||||| ||||||||| | ||| ||||||||||||||||| || ||||| ||||||||||||||||| ||||| |||||||| |||||||||||||    
T  44211155 ctaccagccagaacatccatcagagttgttttaccagctccacttacacccatcaaagctgtgagaacaccgggcctgaatgcaccgctaacacccttca 44211254  T
Q  219 aaagtactaatctatcctctactacaccttgaaccttcatttcctg 264  Q
    |||| |||| ||| ||||||   ||||||||  |||||||||||||    
T  44211255 aaagcactagtctgtcctctgtaacaccttgctccttcatttcctg 44211300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 104 - 205
Target Start/End: Original strand, 43457695 - 43457796
Alignment:
Q  104 taaccaccggttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgagaacaccaggcctaaatgcac 203  Q
    |||||||| || ||||| ||||| ||||||||||| ||||| || || |||||||||||||||||||||||||| || ||||| |||||||| |||||||    
T  43457695 taaccacctgtcttccttccagctaaaacatccatcaaagttgtctttccagctccactaactcccattaaagccgttagaactccaggcctgaatgcac 43457794  T
Q  204 ca 205  Q
    ||    
T  43457795 ca 43457796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 442
Target Start/End: Original strand, 44211408 - 44211487
Alignment:
Q  363 tggcatgtcaacagaatatataacttggtcaaaggttatagaatgtggttcaaaaggaagactcattccccttttctttc 442  Q
    ||||||||||||||| |||| ||  |  ||||| || ||||||||||||||||| ||||||  ||||||| |||||||||    
T  44211408 tggcatgtcaacagagtatacaatatcatcaaaagtgatagaatgtggttcaaatggaagaaccattccctttttctttc 44211487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 363 - 442
Target Start/End: Original strand, 44234392 - 44234471
Alignment:
Q  363 tggcatgtcaacagaatatataacttggtcaaaggttatagaatgtggttcaaaaggaagactcattccccttttctttc 442  Q
    ||||||||||||||| |||| ||  |  ||||| || ||||||||||||||||| ||||||  ||||||| |||||||||    
T  44234392 tggcatgtcaacagagtatacaatatcatcaaaagtgatagaatgtggttcaaatggaagaaccattccctttttctttc 44234471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 438
Target Start/End: Complemental strand, 39338034 - 39337952
Alignment:
Q  356 ttacctgtggcatgtcaacagaatatataacttggtcaaaggttatagaatgtggttcaaaaggaagactcattccccttttc 438  Q
    |||||||||||||||| ||||||||| ||||||  |||||||||||||||||||||||||||||||||  ||||||| |||||    
T  39338034 ttacctgtggcatgtctacagaatatgtaacttcatcaaaggttatagaatgtggttcaaaaggaagaaccattccctttttc 39337952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 356 - 438
Target Start/End: Original strand, 39564804 - 39564886
Alignment:
Q  356 ttacctgtggcatgtcaacagaatatataacttggtcaaaggttatagaatgtggttcaaaaggaagactcattccccttttc 438  Q
    |||||||||||||||| || |||||| ||||||  |||||||||||||||||||||||||||||||||  |||||||||||||    
T  39564804 ttacctgtggcatgtctacggaatatgtaacttcatcaaaggttatagaatgtggttcaaaaggaagaaccattccccttttc 39564886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 356 - 438
Target Start/End: Complemental strand, 39349211 - 39349129
Alignment:
Q  356 ttacctgtggcatgtcaacagaatatataacttggtcaaaggttatagaatgtggttcaaaaggaagactcattccccttttc 438  Q
    ||||||| |||||||| | ||||||| ||||||  |||||||||||||||||||||||||||||||||  ||||||| |||||    
T  39349211 ttacctgcggcatgtctatagaatatgtaacttcatcaaaggttatagaatgtggttcaaaaggaagaaccattccctttttc 39349129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 358 - 438
Target Start/End: Original strand, 39547952 - 39548032
Alignment:
Q  358 acctgtggcatgtcaacagaatatataacttggtcaaaggttatagaatgtggttcaaaaggaagactcattccccttttc 438  Q
    |||||||||||||| ||||||||| ||||||  |||||||| || ||||||||||||||||| |||  |||||| ||||||    
T  39547952 acctgtggcatgtctacagaatatgtaacttcatcaaaggtgattgaatgtggttcaaaagggagaaccattcctcttttc 39548032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 443
Target Start/End: Complemental strand, 39365684 - 39365597
Alignment:
Q  356 ttacctgtggcatgtcaacagaatatataacttggtcaaaggttatagaatgtggttcaaaaggaagactcattccccttttctttct 443  Q
    |||||||||||||||| |||||||||  |||||  |||||||| || |||||||||||||| ||||||  |||||| |||||| ||||    
T  39365684 ttacctgtggcatgtctacagaatatgaaacttcatcaaaggtgattgaatgtggttcaaatggaagaaccattcctcttttccttct 39365597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 443
Target Start/End: Original strand, 39538586 - 39538673
Alignment:
Q  356 ttacctgtggcatgtcaacagaatatataacttggtcaaaggttatagaatgtggttcaaaaggaagactcattccccttttctttct 443  Q
    |||||||||||||||| |||||||||  |||||  |||||||| || |||||||||||||| ||||||  |||||| |||||| ||||    
T  39538586 ttacctgtggcatgtctacagaatatgaaacttcatcaaaggtgattgaatgtggttcaaatggaagaaccattcctcttttccttct 39538673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 440
Target Start/End: Original strand, 39575466 - 39575543
Alignment:
Q  364 ggcatgtcaacagaatatataacttggtcaaaggttatagaatgtggttcaaaaggaagactcattcc-ccttttctt 440  Q
    |||||||| ||||||||| | ||||  |||||||||||||||||| ||||||||||||||  |||||| |||||||||    
T  39575466 ggcatgtcgacagaatatgttacttcatcaaaggttatagaatgttgttcaaaaggaagaaccattcctccttttctt 39575543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 437
Target Start/End: Original strand, 39589695 - 39589776
Alignment:
Q  356 ttacctgtggcatgtcaacagaatatataacttggtcaaaggttatagaatgtggttcaaaaggaagactcattcccctttt 437  Q
    |||||||||||||||| ||||||||| | ||||  |||||||| | | ||||||||||||||||||||  |||||| |||||    
T  39589695 ttacctgtggcatgtctacagaatatgttacttcatcaaaggtgacacaatgtggttcaaaaggaagaaccattcctctttt 39589776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 39589363 - 39589547
Alignment:
Q  14 tggacatcattctgctcacaataaccagagattcgagcaaacgtttcttgtcttttaaggtagcctgaaatttttatggtgccgtcgatataaccaccgg 113  Q
    |||| |||||| |||||||| || ||||| ||||  ||||| ||||||||  | ||| | || || |||||| | ||||| ||  | ||||| ||||| |    
T  39589363 tggatatcattttgctcacagtatccagaaattcttgcaaatgtttcttgcttcttaggatatccagaaattgtgatggtcccaccaatatatccaccag 39589462  T
Q  114 ttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgagaacaccaggcctaaa 198  Q
    |||| |||||||  |  |||||||  ||||||||||| ||||| ||  | || ||||||||||| ||||||||||||||||||||    
T  39589463 tttttctaccagaaagcacatccaacaaagtagtttttccagcacccgtgacgcccattaaagcagtgagaacaccaggcctaaa 39589547  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 247
Target Start/End: Original strand, 39564401 - 39564547
Alignment:
Q  101 atataaccaccggttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgagaacaccaggcctaaatg 200  Q
    ||||| || ||||||||||||||||  |  |||||||| | ||| ||||| ||||| ||  | || ||||||| ||| |||||||||||||| || || |    
T  39564401 atatatcctccggttttcctaccagaaagcacatccatcagagttgttttgccagcaccggtcacacccattagagcagtgagaacaccaggtctgaaag 39564500  T
Q  201 caccactaacacccttcaaaagtactaatctatcctctactacacct 247  Q
    | ||||| |||||||||||||| || ||  ||||||| || ||||||    
T  39564501 ctccacttacacccttcaaaagaaccaacttatcctcaacaacacct 39564547  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 431
Target Start/End: Original strand, 39622463 - 39622538
Alignment:
Q  356 ttacctgtggcatgtcaacagaatatataacttggtcaaaggttatagaatgtggttcaaaaggaagactcattcc 431  Q
    ||||||||||||| ||||| |||||| | ||||  |||||||| ||| | ||||||||||||| |||| |||||||    
T  39622463 ttacctgtggcatatcaactgaatatgttacttcatcaaaggtgatacagtgtggttcaaaagaaagaatcattcc 39622538  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 114 - 222
Target Start/End: Original strand, 39575225 - 39575333
Alignment:
Q  114 ttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgagaacaccaggcctaaatgcaccactaacacc 213  Q
    ||||||||||||| |  |||||||| ||||| ||||| ||||| ||| | || ||||| |  || ||||||||||| |||||||| || || || |||||    
T  39575225 ttttcctaccagcaagtacatccatcaaagttgttttgccagcaccagtgacacccataagtgcagtgagaacacctggcctaaaagctccgctgacacc 39575324  T
Q  214 cttcaaaag 222  Q
     ||||||||    
T  39575325 gttcaaaag 39575333  T

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Target: chr1 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 122 - 223
Target Start/End: Original strand, 2149030 - 2149131
Alignment:
Q  122 ccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgagaacaccaggcctaaatgcaccactaacacccttcaaaa 221  Q
    ||||| |||||||||||||||||||| || ||||| ||||| || ||||| |||||||| || || ||||| ||||| ||||||||||||||||||||||    
T  2149030 ccagctaaaacatccattaaagtagtctttccagcaccacttacacccatcaaagctgttagtactccaggtctaaaagcaccactaacacccttcaaaa 2149129  T
Q  222 gt 223  Q
    ||    
T  2149130 gt 2149131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 101 - 223
Target Start/End: Original strand, 2160992 - 2161114
Alignment:
Q  101 atataaccaccggttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgagaacaccaggcctaaatg 200  Q
    ||||| ||||| |||||||| ||||| ||||||||||||| |||||| || || || ||||| || ||||| ||||| || || || ||||||||||| |    
T  2160992 atatatccaccagttttccttccagctaaaacatccattagagtagtctttccggcaccacttacacccatcaaagcagttagtactccaggcctaaagg 2161091  T
Q  201 caccactaacacccttcaaaagt 223  Q
    | ||| | | |||||||||||||    
T  2161092 cgccattgatacccttcaaaagt 2161114  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 223
Target Start/End: Complemental strand, 49773175 - 49773065
Alignment:
Q  113 gttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgagaacaccaggcctaaatgcaccactaacac 212  Q
    |||||||| |||| ||  |||||||||| ||| ||||||||||||||||| |  ||||||| |||||| ||||| || || ||||| || ||| ||||||    
T  49773175 gttttccttccagacagcacatccattagagttgttttaccagctccacttatacccattagagctgtcagaactcctggtctaaaagctccattaacac 49773076  T
Q  213 ccttcaaaagt 223  Q
    |  ||||||||    
T  49773075 ctgtcaaaagt 49773065  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 192
Target Start/End: Original strand, 25523358 - 25523452
Alignment:
Q  98 tcgatataaccaccggttttcctaccagccaaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgagaacaccagg 192  Q
    |||||||| || || |||||||| || || |  |||||||||||||| ||||| |||||||||||   ||||||||| ||||| || ||||||||    
T  25523358 tcgatatatcctcctgttttccttcctgcaagcacatccattaaagtggttttcccagctccacttgatcccattaatgctgtaagtacaccagg 25523452  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 4501238 - 4501168
Alignment:
Q  128 aaaacatccattaaagtagttttaccagctccactaactcccattaaagctgtgagaacaccaggcctaaa 198  Q
    ||||||||||||||||| || || || || ||||||||||||||||  || || ||||| |||||||||||    
T  4501238 aaaacatccattaaagttgtcttcccggcaccactaactcccattagtgcagtaagaactccaggcctaaa 4501168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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