View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8135_low_6 (Length: 433)
Name: NF8135_low_6
Description: NF8135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8135_low_6 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 47387629 - 47387219
Alignment:
| Q |
18 |
gctgcaacttgaagtggccgttaaatttgtacgtaaatattgatatagtggatgtgcgattcggatcttatggcacatgttccagttactttggaaaata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47387629 |
gctgcaacttgaagtggccgttaaatttgtacgtaaatattgatatagtggatgtgcgattcggatcttatggcacatgttccagttactttggaaaata |
47387530 |
T |
|
| Q |
118 |
ttgtgactctcactccattcttacgtatagcaaatgaacatgaaacaatagagagagcggtttgctatgattgccattgaatttctattttagcaagaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47387529 |
ttgtgactctcactccattcttacgtatagcatatgaacatgaaacaatggagagagcgatttgctatgattgccattgaatttatattttagcaagaaa |
47387430 |
T |
|
| Q |
218 |
ttagtgatatgttaagttagggaagtaagggtcgagaatgag-agtaaataagaaatttgttctttcggattgagttgtaatgagatttaagtatctttt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47387429 |
ttagtgatatgttaagttagggaagtaagggtcgagaatgagaagtaaataagaaacttgttctttcggattgagttgtaatgagatttaagtatctttt |
47387330 |
T |
|
| Q |
317 |
gctctcattttgataaaattgcttataagaaatttctcatttatccaatttaaattttgttgaatcattttttggaccttaactcgtttatatatcgaat |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
47387329 |
gctctcattttgataaaattgcttataagaaatttctcatttatccaatttaaattttgtt------ttttttggaccttaactcgtttatatatccaat |
47387236 |
T |
|
| Q |
417 |
caaacctaacgatctat |
433 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
47387235 |
caaacctaacgatctat |
47387219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University