View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8135_low_7 (Length: 409)
Name: NF8135_low_7
Description: NF8135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8135_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 5 - 396
Target Start/End: Complemental strand, 3125272 - 3124876
Alignment:
| Q |
5 |
tccaatgagatggacatcaagagatataatagtagatattattatggttaattggtttttactgaaatgtaacatagttttatttcaaaaaag--ctggt |
102 |
Q |
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| T |
3125272 |
tccaatgagatgcac--caagagatataatagtagatattattatggttaattggtttttactgaaatgtaacatagttttatttcaaaaaagagctggt |
3125175 |
T |
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| Q |
103 |
tgctgtaaatttctggaatttcatgtatgcacactatttttt--gttctctgttgttattattaggtgtggtaaggttgtgtctctttcttttaactgtc |
200 |
Q |
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| T |
3125174 |
tgctgtaaatttctggaatttcatgtatgcacactattttttttgttctctgttgttattattaggtgtggtaaggttgtgtctctttcttttaactgtc |
3125075 |
T |
|
| Q |
201 |
cgtgtaaagtgtttgttacgttttctgacccggtgaaggaatattactatgtctattattat---gatacagagaaagtttgaaagattcacgtttcttc |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
3125074 |
cgtgtaaagtgtttgttacgttttctgacccggtgaaggaatattactatgtctattattattatgatacagaaaaagtttgaaagattcacgtttcttc |
3124975 |
T |
|
| Q |
298 |
ttctttatgtattttctttgtcctattcttccacacatacggcgagttgttttaaattttagaataagaaagagaaatcaagattctttttgttttatt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3124974 |
ttctttatgtattttctttgtcctattcttccacacatacggcgagttgttttaaattttagtataagaaagagaaatcaagattctttttgttttatt |
3124876 |
T |
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