View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8135_low_8 (Length: 335)
Name: NF8135_low_8
Description: NF8135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8135_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 2486344 - 2486030
Alignment:
| Q |
1 |
atcatatatggtttcctttatacgaataataatatgaatacaaatgtatgtcatacagcaaccatgtaattaagaaaacagtcaatgagaatgagatctt |
100 |
Q |
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| T |
2486344 |
atcatatatggtttgctttatacgaataataatatgaatacaaatgtatgtcatacagcaaccatgtaattaagaaaacagtcaatgagaatgagatctt |
2486245 |
T |
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| Q |
101 |
tattaatatggttattactacaaatgaaccggaaactaaacaaattcgcatgcatgtatcatggaaaataggaaaataaaaggagaatgaatcgataata |
200 |
Q |
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| T |
2486244 |
tattaatatggttattactacaaatgtaccggaaactaaacaaattcgcatgcatgtatgatggaaaataggaaaataaaaggagaatgaatcgataata |
2486145 |
T |
|
| Q |
201 |
tacctgagataataagggaaattatcaaaggtgacattgctttctctaccatcaacaatgagtcgtagcatttcgttttcaatcttgtcaggagtgaggg |
300 |
Q |
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| T |
2486144 |
tacctgagataataagggaaattatcaaaggtgacattgctttctctaccatcaacaacgagtcgtagcatttcgttttcaatcttgtcaggagtgaggg |
2486045 |
T |
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| Q |
301 |
cgttggaggaggagg |
315 |
Q |
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| T |
2486044 |
cgttggaggaggagg |
2486030 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 41595036 - 41595088
Alignment:
| Q |
207 |
agataataagggaaattatcaaaggtgacattgctttctctaccatcaacaat |
259 |
Q |
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| T |
41595036 |
agataataagggaatttatcaaaagtaacgttgctttctctgccatcaacaat |
41595088 |
T |
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