View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8135_low_9 (Length: 295)
Name: NF8135_low_9
Description: NF8135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8135_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 36 - 277
Target Start/End: Complemental strand, 22274804 - 22274567
Alignment:
| Q |
36 |
tatattttaccaattatgtctgcattttattcttatagtggacatgatgatatgtactgtggcgcatctttatgaagcctttaaattaattgaaagatgt |
135 |
Q |
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| T |
22274804 |
tatattttaccaattatgtc-gcattttgttcttatagtggacatgat---atgtattgtggcgcatctttatgaagcctttaaattcattgaaagatgt |
22274709 |
T |
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| Q |
136 |
cataaaacatcgtgacaatgcatgagaacatagataaatcattacaaaatatcttgaaacaacaagaaatgaagatgttgtgctagactaattgaaaggt |
235 |
Q |
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| T |
22274708 |
cataaaacttggtatcaatgcatgagaacatagacaaatcattacaaaataccttgaaacaacaagaaatgaagatgttgtgctagactgattgaaaggt |
22274609 |
T |
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| Q |
236 |
ttgatcgtttcaaccaatccaatacaaaatcctcagaacttg |
277 |
Q |
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| T |
22274608 |
tagatcgtttcaaccaatccaatacaaaatcttcagaacttg |
22274567 |
T |
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