View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8136_high_2 (Length: 413)
Name: NF8136_high_2
Description: NF8136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8136_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 4 - 405
Target Start/End: Complemental strand, 22275198 - 22274802
Alignment:
| Q |
4 |
ctcacaaaaatgatcatcctatcatactgatagtagctagctacacttacctatcggttttatttataagttgcccttcacaatcagttagtttgaagtg |
103 |
Q |
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| T |
22275198 |
ctcacaaaaatgatcatcctatcatactgatagtagcta----cacttacctatcggttttatttataatttgcccttcacaatcagttagtttgaagtg |
22275103 |
T |
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| Q |
104 |
gatgtaactaactcttaactactataacaaaataggaaatagctatcacattaactttactagttactagcatagacattcactaactatataatttgtt |
203 |
Q |
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| T |
22275102 |
gatgtaactaactcttaactactaaaacaaaataggaaatagctatcacattaactttactagttactagcatagacattcactaactatataatttgtt |
22275003 |
T |
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| Q |
204 |
gatccacaagctttcatacatacatctttgaaataggttaatcttccacacattttgcaattttggtgaaaaattaataatatagtttgtagctgattcc |
303 |
Q |
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| T |
22275002 |
gatccacaagctttcatacatacatctttgaaataggttagtcttccacacattttgcaattttggtg-aaaattgataatatagtttgtagctgattcc |
22274904 |
T |
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| Q |
304 |
attgatctactcaatttaaaagctagattgaaacctgatagtcaaatgtttattgggatatttgctgcatgtagtatactagcagatcgagaaatggagt |
403 |
Q |
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| T |
22274903 |
attgatctactcaatttaaaagctagattgaaacttgatagtcaaatgtttattgggatatttgctgcatgtagtatgctagcagatcgagaaatggagt |
22274804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 380
Target Start/End: Complemental strand, 22267222 - 22267139
Alignment:
| Q |
298 |
gattccattgatctactcaatttaaaagct-agattgaaacctgatagtcaaatgtttattgggatatttgctgcatgtagtat |
380 |
Q |
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|||||| |||||||||||| || |||| | |||||||||||| ||| ||||||||||||| ||||||||| || || |||||| |
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| T |
22267222 |
gattcctttgatctactcatttaaaaatttgagattgaaacctaataatcaaatgtttattcggatatttgttgtatttagtat |
22267139 |
T |
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