View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8136_high_3 (Length: 314)
Name: NF8136_high_3
Description: NF8136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8136_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 4305231 - 4305515
Alignment:
| Q |
18 |
agagatgtccatggtggaccacatgcatagttatattaaatattttagagcctcaaatcgtcgctaaatatgtggggcagtcgctgatcaattttaatag |
117 |
Q |
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| T |
4305231 |
agagttgtccatggtggaccacatgcatagttatattaaatattttagagcctcaaatcgtcgctaaatatgtggggcagttgctgaacaattttaatag |
4305330 |
T |
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| Q |
118 |
ttggtagcaagatgattttataatannnnnnnn-atcaaataagaaatatcgtgaaaaacaccaggagaggcctgaactaaagtaccgaagttacatgaa |
216 |
Q |
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| T |
4305331 |
ttggtagcaagatgattttataatttttttttttatcaaataagaaatatcgtgaaaaacaccaggagaggcctgaactaaagtaccgaagttacatgaa |
4305430 |
T |
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| Q |
217 |
tacaatcctttaaaaaggtaaacaacttttatccctatctaggaaagaagaaatcaaattgggaggagagtcccacaagtgagaa |
301 |
Q |
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| T |
4305431 |
tacaatcctttgaaaaggtaaacaacttttatccctatctaggaaagaagaaatcaaattgggaggagagtcccacaagtgagaa |
4305515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 4264794 - 4264713
Alignment:
| Q |
47 |
gttatattaaatattttagagcctcaaatcgtcgctaaatatgtggggcagtcgct-gatcaattttaatagttggtagcaagat |
130 |
Q |
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| T |
4264794 |
gttatcttaaatattttagagcctcaaatc-tcgct--atatgtggggcagtgactaaatcaattttgatagttgggagcaagat |
4264713 |
T |
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