View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8136_low_1 (Length: 666)
Name: NF8136_low_1
Description: NF8136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8136_low_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 543; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 20 - 666
Target Start/End: Complemental strand, 53831179 - 53830518
Alignment:
| Q |
20 |
ggaatgcccctcccattgaagaaatttgtaaaccccattcttcaacaaaattgatttcatttcgcatgtactgtacttccttctcataataannnnnnng |
119 |
Q |
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| T |
53831179 |
ggaatgcccctcccattgaagaaatttgtaaaccccattcttcaacaaaattgatttcatttcgcatgtactgtacttccttctcataataatttttttg |
53831080 |
T |
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| Q |
120 |
agaccgaggaagtagtttaatggctcaaacaataatctgtgttggagaagatgtcaaacacacaagattgattatgctctcccagctataatgtaactct |
219 |
Q |
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| T |
53831079 |
agaccgaggaagtagtttaatggctcaaacaataatctgtgttggagaagatgtcaaacacacaagattgattatgctctcccagctataatgtaactct |
53830980 |
T |
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| Q |
220 |
aactgtaaggtttgaatccagaagattctattagattttttctatgtaggaagaataaattgcaacatttcaccaa-------------agttgaattga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
53830979 |
aactgtaaggtttgaatccagaagattctattagattttttctatgtaggaagaataaattgcaacatttcaccaattaatttcaccaaagttgaattga |
53830880 |
T |
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| Q |
307 |
actagccacatcacttctaggaatttgtccaaaatattttatttataacttcaaaccactttaaaactcaaattgacccacctacccaccattttacata |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53830879 |
actagccacatcacttctaggaatttgtccaaaatattt-----ataacttcaaaccactttaaaactcaaattgacccacctacccaccattttacata |
53830785 |
T |
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| Q |
407 |
tt---ctcctgctcaatttccttgttcttctacacgtattgttgcaagagtttctatttctattatgataactcttatttcacaaaaagagagagttgtt |
503 |
Q |
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| T |
53830784 |
ttattctcctgctcaatttccatgttcttctacacgtattgttgcaagagtttctatttctattatgataactcttatttcacaaaaagagagagttgtt |
53830685 |
T |
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| Q |
504 |
ccaattattttttcattgataagtgatcttgtggggcataaagggggaagggtgaaaaactaccgctct----catgcgcctgcagaaaactcagctgtt |
599 |
Q |
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| T |
53830684 |
ccaattattttttcattgataagtgatctagtggggcataaagggggaagggtgaaaaactaccgctctaatgcatgcgcctgcagaaaactcagctgtt |
53830585 |
T |
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| Q |
600 |
ctaaataataaacattgaatgatagctaaaatataacgtgctctaaataataaaaatgttccttctt |
666 |
Q |
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| T |
53830584 |
ctaaataataaacattgaatgatagctaaaatataacgtgctctaaataataaaaatgttccttctt |
53830518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 53839088 - 53839033
Alignment:
| Q |
20 |
ggaatgcccctcccattgaagaaatttgtaaaccccattcttcaacaaaattgattt |
76 |
Q |
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||||||||||||||||| |||||||||||||||| | ||||| |||||||||||||| |
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| T |
53839088 |
ggaatgcccctcccattcaagaaatttgtaaacctc-ttcttgaacaaaattgattt |
53839033 |
T |
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