View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8136_low_11 (Length: 239)

Name: NF8136_low_11
Description: NF8136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8136_low_11
NF8136_low_11
[»] chr3 (8 HSPs)
chr3 (5-221)||(23035958-23036174)
chr3 (5-214)||(23038836-23039045)
chr3 (4-217)||(23016854-23017067)
chr3 (5-217)||(23148550-23148762)
chr3 (3-201)||(23145728-23145926)
chr3 (5-172)||(23032551-23032718)
chr3 (20-194)||(23024087-23024261)
chr3 (13-215)||(23139840-23140042)
[»] scaffold0554 (1 HSPs)
scaffold0554 (3-196)||(6748-6941)
[»] chr6 (1 HSPs)
chr6 (5-159)||(21779663-21779817)
[»] chr1 (3 HSPs)
chr1 (3-165)||(12609749-12609911)
chr1 (5-141)||(12636869-12637005)
chr1 (1-165)||(15885954-15886118)
[»] scaffold0059 (1 HSPs)
scaffold0059 (3-143)||(62019-62159)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 221
Target Start/End: Complemental strand, 23036174 - 23035958
Alignment:
Q  5 ggaagaataatatacccagggagcacatttggtttgagaaatattgacatggcccttgcgatgttgttgtatcattttgactggaagcttcctagtggaa 104  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23036174 ggaagaagaatatgcccagggagcacatttggtttgagaaatattgacatggcccttgcgatgttgttgtatcattttgactggaagcttccaagtggaa 23036075  T
Q  105 tcaaaagtgaagaattggacatgactgacgaatttggagccaccatgagaagaaaggatgaacttttattgtttccttctgtttatcatcctctgcatgt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23036074 tcaaaagtgaagaattggacatgactgacgaatttggagccacaatgagaagaaaggatgaacttttattgttttcttctgtttatcatcctctgcatgt 23035975  T
Q  205 aatatgagcttcataag 221  Q
     ||||||||||||||||    
T  23035974 catatgagcttcataag 23035958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 5 - 214
Target Start/End: Complemental strand, 23039045 - 23038836
Alignment:
Q  5 ggaagaataatatacccagggagcacatttggtttgagaaatattgacatggcccttgcgatgttgttgtatcattttgactggaagcttcctagtggaa 104  Q
    ||||||| ||||| |||||||||||||||||||||||||| ||||||  |||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  23039045 ggaagaagaatatgcccagggagcacatttggtttgagaagtattgagctggcccttgcaatgttgttgtatcattttgactggaagcttccaagtggaa 23038946  T
Q  105 tcaaaagtgaagaattggacatgactgacgaatttggagccaccatgagaagaaaggatgaacttttattgtttccttctgtttatcatcctctgcatgt 204  Q
    ||| ||||||||| ||||| |||||||| ||||| |||||||| ||||||||||| ||||| |||||||||||| ||| ||||||||||||| || | ||    
T  23038945 tcagaagtgaagacttggatatgactgatgaattcggagccacaatgagaagaaaagatgatcttttattgttttcttttgtttatcatcctttgtaagt 23038846  T
Q  205 aatatgagct 214  Q
     |||||||||    
T  23038845 catatgagct 23038836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 4 - 217
Target Start/End: Complemental strand, 23017067 - 23016854
Alignment:
Q  4 tggaagaataatatacccagggagcacatttggtttgagaaatattgacatggcccttgcgatgttgttgtatcattttgactggaagcttcctagtgga 103  Q
    |||||||| ||||| ||| ||||| ||||| |||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||  |||||    
T  23017067 tggaagaagaatatgccctgggagtacattcggtttgagaaatgttgagttggcccttgcgatgttgttgtatcattttgactggaagcttcccggtgga 23016968  T
Q  104 atcaaaagtgaagaattggacatgactgacgaatttggagccaccatgagaagaaaggatgaacttttattgtttccttctgtttatcatcctctgcatg 203  Q
    |||||| |||| ||| |||||||||||||  ||||||||| ||| ||||| ||||| ||||| |||||| | || |||| ||||||||||||| || |||    
T  23016967 atcaaatgtgacgaactggacatgactgagcaatttggagtcacaatgaggagaaaagatgaccttttactattgccttttgtttatcatcctttgaatg 23016868  T
Q  204 taatatgagcttca 217  Q
    | | ||||||||||    
T  23016867 tcagatgagcttca 23016854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 5 - 217
Target Start/End: Complemental strand, 23148762 - 23148550
Alignment:
Q  5 ggaagaataatatacccagggagcacatttggtttgagaaatattgacatggcccttgcgatgttgttgtatcattttgactggaagcttcctagtggaa 104  Q
    ||||||| ||||| ||||||||||| |||||||||||||||||||||  ||||||| || |||||||||||||||||||||||||||||||| |||||||    
T  23148762 ggaagaagaatatgcccagggagcatatttggtttgagaaatattgagctggccctagcaatgttgttgtatcattttgactggaagcttcccagtggaa 23148663  T
Q  105 tcaaaagtgaagaattggacatgactgacgaatttggagccaccatgagaagaaaggatgaacttttattgtttccttctgtttatcatcctctgcatgt 204  Q
    | | | |||||||| |||| |||||||| |||||||||  |||  |||| ||||| ||||| ||||||||||  |||| ||||||||||||| |||| ||    
T  23148662 taacaggtgaagaaatggatatgactgaggaatttggactcacggtgaggagaaaagatgatcttttattgtgcccttttgtttatcatcctttgcaagt 23148563  T
Q  205 aatatgagcttca 217  Q
     | ||||||||||    
T  23148562 tacatgagcttca 23148550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 23145926 - 23145728
Alignment:
Q  3 ctggaagaataatatacccagggagcacatttggtttgagaaatattgacatggcccttgcgatgttgttgtatcattttgactggaagcttcctagtgg 102  Q
    ||||||||| |||||  |||||||||||||||||||||| |||||||||  ||| |||||| ||||| ||||||||||||||||||||||||||||||||    
T  23145926 ctggaagaagaatatgtccagggagcacatttggtttgacaaatattgagctggtccttgcaatgttattgtatcattttgactggaagcttcctagtgg 23145827  T
Q  103 aatcaaaagtgaagaattggacatgactgacgaatttggagccaccatgagaagaaaggatgaacttttattgtttccttctgtttatcatcctctgca 201  Q
    ||| | | |||||||| |||| |||||||| |||||||||  |||  |||||||||| ||||| ||||||||||  |||| ||||||| ||||| ||||    
T  23145826 aataacaggtgaagaaatggatatgactgaggaatttggactcacggtgagaagaaaagatgatcttttattgtgcccttttgtttataatcctttgca 23145728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 5 - 172
Target Start/End: Complemental strand, 23032718 - 23032551
Alignment:
Q  5 ggaagaataatatacccagggagcacatttggtttgagaaatattgacatggcccttgcgatgttgttgtatcattttgactggaagcttcctagtggaa 104  Q
    ||||||| ||||| ||||||||| |||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||| |||||||  |||||    
T  23032718 ggaagaagaatatgcccagggagtacatttggtttgagaaatattgagctggccctcgcgatgttgttgtatcattttgactggacgcttcctgatggaa 23032619  T
Q  105 tcaaaagtgaagaattggacatgactgacgaatttggagccaccatgagaagaaaggatgaactttta 172  Q
    ||| ||||| |||| | ||||||||||| |||||||||  | | ||||||||||| ||||| ||||||    
T  23032618 tcagaagtgcagaactagacatgactgaggaatttggaatcgcaatgagaagaaaagatgatctttta 23032551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 194
Target Start/End: Complemental strand, 23024261 - 23024087
Alignment:
Q  20 ccagggagcacatttggtttgagaaatattgacatggcccttgcgatgttgttgtatcattttgactggaagcttcctagtggaatcaaaagtgaagaat 119  Q
    |||||||||| |||||||||| ||| | ||||  | |||||||| | ||||||||| |||||||| ||||||||||||| ||||||||||||||||||||    
T  23024261 ccagggagcatatttggtttgcgaagtgttgagctagcccttgcaaagttgttgtaccattttgattggaagcttcctaatggaatcaaaagtgaagaat 23024162  T
Q  120 tggacatgactgacgaatttggagccaccatgagaagaaaggatgaacttttattgtttccttctgtttatcatc 194  Q
    |||||||||||||  |||||||   |||  || | ||||| ||||| || |||||||| ||||||||||||||||    
T  23024161 tggacatgactgagaaatttggtatcacagtgtgtagaaaagatgatctattattgttaccttctgtttatcatc 23024087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 23140042 - 23139840
Alignment:
Q  13 aatatacccagggagcacatttggtttgagaaatattgacatggcccttgcgatgttgttgtatcattttgactggaagcttcctagtggaatcaaaagt 112  Q
    ||||| |||||| |||| |||||||||||||||| ||||  || ||||||| |  ||||||| | ||||||| ||||||||||| |||||||| | ||||    
T  23140042 aatatgcccaggaagcatatttggtttgagaaatgttgagttgacccttgcaacattgttgttttattttgattggaagcttccgagtggaattagaagt 23139943  T
Q  113 gaagaattggacatgactgacgaatttggagccaccatgagaagaaaggatgaacttttattgtttccttctgtttatcatcctctgcatgtaatatgag 212  Q
    ||||||||||| ||||| || |||||||||| | |  |||||||||| ||||| ||||||||||| |||| ||||| ||||||| ||| ||| || ||||    
T  23139942 gaagaattggatatgaccgaggaatttggagtcgcagtgagaagaaaagatgatcttttattgttgccttttgtttgtcatcctttgcctgtcatgtgag 23139843  T
Q  213 ctt 215  Q
    |||    
T  23139842 ctt 23139840  T

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Target: scaffold0554 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 3 - 196
Target Start/End: Original strand, 6748 - 6941
Alignment:
Q  3 ctggaagaataatatacccagggagcacatttggtttgagaaatattgacatggcccttgcgatgttgttgtatcattttgactggaagcttcctagtgg 102  Q
    ||||||||| ||| | |||||| || | |||||||||||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||  ||||    
T  6748 ctggaagaagaatttgcccaggaagtatatttggtttgagaaatgttgagctggcgcttgcgatgttgttgtatcattttgactggaagcttccatgtgg 6847  T
Q  103 aatcaaaagtgaagaattggacatgactgacgaatttggagccaccatgagaagaaaggatgaacttttattgtttccttctgtttatcatcct 196  Q
    ||||||||||||||||||||||||||| || ||||||||||  || ||||||||||||||||| |||| ||||||||| |||||||||||||||    
T  6848 aatcaaaagtgaagaattggacatgacagaggaatttggagttacaatgagaagaaaggatgatctttcattgtttccctctgtttatcatcct 6941  T

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Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 21779817 - 21779663
Alignment:
Q  5 ggaagaataatatacccagggagcacatttggtttgagaaatattgacatggcccttgcgatgttgttgtatcattttgactggaagcttcctagtggaa 104  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| ||||| |    
T  21779817 ggaagaagaatatgcccagggagcacatttggtttgagaaatattgagacgacccttgcgatgttgttgtatcattttgactggaagcttccaagtggga 21779718  T
Q  105 tcaaaagtgaagaattggacatgactgacgaatttggagccaccatgagaagaaa 159  Q
    |||||||||||||||||||||||||||| ||||| |||| ||| |||| ||||||    
T  21779717 tcaaaagtgaagaattggacatgactgaggaattcggagtcacaatgaaaagaaa 21779663  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 165
Target Start/End: Complemental strand, 12609911 - 12609749
Alignment:
Q  3 ctggaagaataatatacccagggagcacatttggtttgagaaatattgacatggcccttgcgatgttgttgtatcattttgactggaagcttcctagtgg 102  Q
    ||||||||| |||||  ||||| |||||||||||||||| |||| ||||  |||| |||||  || |||||||||| ||||| ||||||||||| | |||    
T  12609911 ctggaagaagaatatgtccaggtagcacatttggtttgataaatgttgagttggcacttgcattgatgttgtatcactttgattggaagcttcccaatgg 12609812  T
Q  103 aatcaaaagtgaagaattggacatgactgacgaatttggagccaccatgagaagaaaggatga 165  Q
    ||| ||| |||| || || |||||||||||  |||||||||| ||| | | |||||| |||||    
T  12609811 aatgaaaggtgaggacttagacatgactgagcaatttggagcgaccgtcaaaagaaaagatga 12609749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 141
Target Start/End: Complemental strand, 12637005 - 12636869
Alignment:
Q  5 ggaagaataatatacccagggagcacatttggtttgagaaatattgacatggcccttgcgatgttgttgtatcattttgactggaagcttcctagtggaa 104  Q
    ||||||| ||||| |||||| | |||||||||||||| |||| ||||  |||| |||||  ||||||| ||||| ||||| |||| |||||| | |||||    
T  12637005 ggaagaagaatatgcccaggcatcacatttggtttgataaatgttgagttggcacttgcattgttgttatatcactttgattggaggcttcccaatggaa 12636906  T
Q  105 tcaaaagtgaagaattggacatgactgacgaatttgg 141  Q
    | ||| |||| || ||||||||||||||  |||||||    
T  12636905 tgaaaggtgaggatttggacatgactgagcaatttgg 12636869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 15885954 - 15886118
Alignment:
Q  1 ttctggaagaataatatacccagggagcacatttggtttgagaaatattgacatggcccttgcgatgttgttgtatcattttgactggaagcttcctagt 100  Q
    ||||||||||| ||||| ||| || |  ||||||||||||  |||| ||||  |||| |||||  ||||||||||||| ||||| |||| ||||||   |    
T  15885954 ttctggaagaagaatatgcccgggcataacatttggtttggtaaatgttgagttggcacttgcattgttgttgtatcactttgattggaggcttcccgat 15886053  T
Q  101 ggaatcaaaagtgaagaattggacatgactgacgaatttggagccaccatgagaagaaaggatga 165  Q
    ||||  ||| |||| || || |||||||| ||  |||||||||| ||| | | |||||| |||||    
T  15886054 ggaacgaaaggtgaggacttagacatgaccgagcaatttggagcgaccgtcaaaagaaaagatga 15886118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 143
Target Start/End: Complemental strand, 62159 - 62019
Alignment:
Q  3 ctggaagaataatatacccagggagcacatttggtttgagaaatattgacatggcccttgcgatgttgttgtatcattttgactggaagcttcctagtgg 102  Q
    |||||| || ||||| |||||| || | |||||||||||  | | ||||  |||| ||||| |||||||||||||| ||||| ||||||||||| | |||    
T  62159 ctggaaaaagaatatgcccaggcagtaaatttggtttgatgagtcttgagctggcacttgcaatgttgttgtatcactttgattggaagcttcccaatgg 62060  T
Q  103 aatcaaaagtgaagaattggacatgactgacgaatttggag 143  Q
    ||| ||| ||||||| ||||||||||||||  |||||||||    
T  62059 aatgaaatgtgaagacttggacatgactgagaaatttggag 62019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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