View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8136_low_2 (Length: 478)
Name: NF8136_low_2
Description: NF8136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8136_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 4e-48; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 179 - 315
Target Start/End: Complemental strand, 32304108 - 32303969
Alignment:
| Q |
179 |
aaaagggttgagtaaagcaacaaagtagatgagacgaatcagttacattagagctcataccctcatagcatttagcaacaatgac---taacattttatg |
275 |
Q |
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| T |
32304108 |
aaaagggttgagtaaagcagcaaagcagatgagacgacacagttatattagagctcataccctcatagcatttagcaacaatgactgttaacattttatg |
32304009 |
T |
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| Q |
276 |
aattgtcttttttgatgatttatgaaatatatgtttcaat |
315 |
Q |
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| T |
32304008 |
aattgtcttttttgacgatttatgaaatgtatgtttcaat |
32303969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 379 - 455
Target Start/End: Complemental strand, 32303900 - 32303823
Alignment:
| Q |
379 |
tatgtgggttgatgaacctaaagcagaacatatggtcttttt-aaagtgtatatccagttcctcttatttctgaaccc |
455 |
Q |
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| T |
32303900 |
tatgagggttgatgaacctaaagcagaacatgtggtttttttaaaagtgtatatccggttcctcttaattctgaaccc |
32303823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 356
Target Start/End: Complemental strand, 32303995 - 32303963
Alignment:
| Q |
324 |
gacgatttatgaaatgtatgtttcaatctaaaa |
356 |
Q |
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| T |
32303995 |
gacgatttatgaaatgtatgtttcaatctaaaa |
32303963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 248
Target Start/End: Complemental strand, 1719352 - 1719282
Alignment:
| Q |
179 |
aaaagggttgagtaaagcaacaaagtagatgagacgaatcagttacattag-agctcataccctcatagca |
248 |
Q |
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| T |
1719352 |
aaaagggttgagtaaagcaacaaagtagatgagaagagacagctactttagcagctcatacactcatagca |
1719282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 35423260 - 35423179
Alignment:
| Q |
134 |
agatcatgtaaagattgtaatacttcccctttcttttgaaa-attaaaaagggt--tgagtaaagcaacaaagtagatgaga |
212 |
Q |
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| T |
35423260 |
agatcatgtaaagattgtaacattttcccattcttttgaaattttgaaaagggttatgagtaaagcaacagagtagatgaga |
35423179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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