View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8136_low_5 (Length: 310)
Name: NF8136_low_5
Description: NF8136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8136_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 24 - 291
Target Start/End: Complemental strand, 38401699 - 38401430
Alignment:
| Q |
24 |
tcgtgttcacatgtaaatatagcattgtacggtctaaactagtaataaacatgttttgtgtca--tgtgttacaaaaatgaaccttgccaacttaaccgc |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
38401699 |
tcgtgttcacatgtaaatatagcattgtacggtctaaactagtaataaacatgttttgtgtcacatgtgttacaaaaatgaaccttgccaacttaattgc |
38401600 |
T |
|
| Q |
122 |
ttaaacggtcatgtttaaaatttagtttcttaactatttaccttgtcagttacaccaaagcacaccttcatgactataatgaaaattattcatcctcata |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38401599 |
ttaaacggtcatgtttaaaatttagtttcttaactatttaccttgtcagttacaccgaagcacaccttcatgactataatgaaaattattcatcctcata |
38401500 |
T |
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| Q |
222 |
gacaatataaattcaaccacaacataaagcaaatggtcattaatctttagcttgttattttctttctttc |
291 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
38401499 |
gacaatataaattcaaccacaacataaagcaaatagccattaatctttagcttgttattttctttctttc |
38401430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 31 - 291
Target Start/End: Complemental strand, 38384259 - 38383992
Alignment:
| Q |
31 |
cacatgtaaatatagcattgtacggtctaaactagtaataaacatgttttgtgtcat--gtgttacaaaaatg-----aaccttgccaacttaaccgctt |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| || | ||||||||||| ||| |
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| T |
38384259 |
cacatgtaaatatagcattgtacggtctaaactagtaataaacatgttttgtttcacaggtgttacaaaaatgtcaacaatcatgccaacttaattactt |
38384160 |
T |
|
| Q |
124 |
aaacggtcatgtttaaaatttagtttcttaactatttaccttgtcagttacaccaaagcacaccttcatgactataatgaaaattattcatcctcataga |
223 |
Q |
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| T |
38384159 |
aaacaatcatgtttaaaatttaggtgcttagctatttaccttgtcggttacaccaaagcactccttcatgactataatgaaaattattcatcctcataga |
38384060 |
T |
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| Q |
224 |
caatataaattcaaccacaacataaagcaaatggtcattaatctttagcttgttattttctttctttc |
291 |
Q |
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||||||||| | ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
38384059 |
caatataaaatgaaccagaacataaagcaaatagtcattaatctctagcttgttattttctttctttc |
38383992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 41 - 241
Target Start/End: Complemental strand, 38393088 - 38392881
Alignment:
| Q |
41 |
tatagcattgtacggtctaaactagtaataaacatgttttgtgt--catgtgttacaaaaatg-----aaccttgccaacttaaccgcttaaacggtcat |
133 |
Q |
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|||||||||||| |||||||| | |||||||||||||| ||| | || ||||||||||||| |||||||||||||| | |||| | | |||| |
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| T |
38393088 |
tatagcattgtatggtctaaatttgtaataaacatgttatgttttacaggtgttacaaaaatatcaacaaccttgccaactttattacttatatgatcat |
38392989 |
T |
|
| Q |
134 |
gtttaaaatttagtttcttaactatttaccttgtcagttacaccaaagcacaccttcatgactataatgaaaattattcatcctcatagacaatataaat |
233 |
Q |
| |
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|||||||||| |||| |||| |||||||||||||| |||||||| |||||| |||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
38392988 |
gtttaaaattaagttgcttagctatttaccttgtcggttacaccgaagcactccttcatgactaaaatgaaaattattcatgctcatagacaatataaat |
38392889 |
T |
|
| Q |
234 |
tcaaccac |
241 |
Q |
| |
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|||||||| |
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| T |
38392888 |
tcaaccac |
38392881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 45 - 287
Target Start/End: Original strand, 37843685 - 37843934
Alignment:
| Q |
45 |
gcattgtacggtctaaactagtaataaacatgttttgtgtcatg--tgttacaaaaatg-----aaccttgccaacttaaccgcttaaacggtcatgttt |
137 |
Q |
| |
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|||||||| |||||||||| || ||||||||||| ||| ||| ||||||||||||| |||||| ||||| ||| |||||||| ||||| || |
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| T |
37843685 |
gcattgtatggtctaaacttgttataaacatgttatgtttcacagttgttacaaaaatgtcaacaacctttccaacataattacttaaacgatcatgctt |
37843784 |
T |
|
| Q |
138 |
aaaatttagtttcttaactatttaccttgtcagttacaccaaagcacaccttcatgactataatgaaaattattcatcctcatagacaatataaattcaa |
237 |
Q |
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||||||||| | |||| ||||||||||||||||||||||| | |||| | ||||| ||||||||||||||||||||| ||||| ||||| ||||| ||| |
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| T |
37843785 |
aaaatttagatgcttagctatttaccttgtcagttacaccgatgcactcgttcataactataatgaaaattattcatgctcatggacaaaataaaatcag |
37843884 |
T |
|
| Q |
238 |
ccacaacataaagcaaatggtcattaatctttagcttgttattttctttc |
287 |
Q |
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|||||||||||||||||| | || |||||| || ||||||||||||||| |
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| T |
37843885 |
ccacaacataaagcaaatagacaataatctctattttgttattttctttc |
37843934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 291
Target Start/End: Original strand, 37838090 - 37838365
Alignment:
| Q |
31 |
cacatgtaaatatagcattgtacggtctaaactagtaataaacatgttttgtgtcatg--tgttacaaaaatg-----aaccttgccaacttaaccgctt |
123 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||| ||||||||||||| ||| ||| |||||||||||| ||||||||||||| | ||| |
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| T |
37838090 |
cacatgtaaatatagcatcgtatggtctaaacttgtaataaacatgtcctgtttcacacctgttacaaaaatatcaacaaccttgccaact-atttactt |
37838188 |
T |
|
| Q |
124 |
aaacggtcatgtttaaaatttagtttcttaactatttac----cttgtcagttacaccaaagcacaccttcatgactataatgaaaattattcatcctca |
219 |
Q |
| |
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||| | ||||||||||||||||||| | || ||||||| |||| ||||||||||||||||| | ||| ||||||||| ||||| |||||| ||| |
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| T |
37838189 |
aaatgatcatgtttaaaatttagttgcctagctatttatttaacttgacagttacaccaaagcactcgttcttgactataacgaaaactattcacggtca |
37838288 |
T |
|
| Q |
220 |
tagacaatataaattcaaccacaacataaagc--aaatggtcattaat---ctttagcttgttattttctttctttc |
291 |
Q |
| |
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| ||||||||||| |||||||||||||||||| |||| ||||||||| || | |||||||||||||||||||| |
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| T |
37838289 |
tcgacaatataaaatcaaccacaacataaagcaaaaatagtcattaatctcctccaacttgttattttctttctttc |
37838365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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