View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8136_low_7 (Length: 303)
Name: NF8136_low_7
Description: NF8136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8136_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 289
Target Start/End: Original strand, 5473163 - 5473437
Alignment:
| Q |
15 |
agattgaagtgatgttaggcagacaatttcagactatcaaacatatagaaagatttttgtatgacttggttaactttccttataatttgagtgttgttac |
114 |
Q |
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| T |
5473163 |
agattgaagtgatgttaggcagacaatttcagactatcaaacttatagaaagatttttgtatgacttggttaattttccttataatttgagtgttgttac |
5473262 |
T |
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| Q |
115 |
agtagagttggttttccatttctgtgcaataacatcacccatcttaaggaatgtattaaggtatattatatttcaggtcaagagctaataaaatcaagtt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5473263 |
agtagagttggttttccatttctgtgcaataacatcacccatcttaaggaatgtattaaggtatattatatttcaggtcaagagctaataaaatcaagtt |
5473362 |
T |
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| Q |
215 |
atcaatgtctttgtatgcttatttacaggggagttgatcaaatactaactatgactataaactatcttttaattc |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5473363 |
atcaatgtctttgtatgcttatttacaggggagttgatcaaatactaactatgactataaactatcttttaattc |
5473437 |
T |
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