View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8136_low_8 (Length: 258)
Name: NF8136_low_8
Description: NF8136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8136_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 38401255 - 38401033
Alignment:
| Q |
21 |
ttatgggctggccacgaaaatggaaagacaccaatgaaattcttctttcccatgttcgagttacaattagttatcatttttgcactcactcaaatatgta |
120 |
Q |
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| T |
38401255 |
ttatgggctggccacgaaaatggaaagacaccaatgaaattcttctttcccatgtttgagttacaattggttatcatttttgcactcactcaaatatgta |
38401156 |
T |
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| Q |
121 |
gttttcttctcaaacctttgagactccctcaattccttccacaaatgattgtaagtaaatccaattgacataattttaagaagaattatttctttagcgc |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
38401155 |
gttttcttctcaaacctttgagactccctcaattccttccacaaatgattgtaagtaaatccaattgacataatttttagaagaattatttctttagtgc |
38401056 |
T |
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| Q |
221 |
atgtttagattaaaagtgatttt |
243 |
Q |
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||||||||||||| ||||||||| |
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| T |
38401055 |
atgtttagattaacagtgatttt |
38401033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 38392679 - 38392457
Alignment:
| Q |
21 |
ttatgggctggccacgaaaatggaaagacaccaatgaaattcttctttcccatgttcgagttacaattagttatcatttttgcactcactcaaatatgta |
120 |
Q |
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||||||| |||| |||||||||||| || ||||||||||| |||||| | |||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38392679 |
ttatggggtggctacgaaaatggaaggagaccaatgaaatccttcttgatcttgtttgagttacaattggttatcatttttgcactcactcaaatatgta |
38392580 |
T |
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| Q |
121 |
gttttcttctcaaacctttgagactccctcaattccttccacaaatgattgtaagtaaatccaattgacataattttaagaagaattatttctttagcgc |
220 |
Q |
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| T |
38392579 |
gttttcttctcaaaccattgagactccctcaattccttccagaaatgattgtaagtaaatccaattgacataatttttagaagaattatttctttagtgc |
38392480 |
T |
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| Q |
221 |
atgtttagattaaaagtgatttt |
243 |
Q |
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| T |
38392479 |
aagtttagattaacggtgatttt |
38392457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 38383822 - 38383646
Alignment:
| Q |
21 |
ttatgggctggccacgaaaatggaaagacaccaatgaaattcttctttcccatgttcgagttacaattagttatcatttttgcactcactcaaatatgta |
120 |
Q |
| |
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||||||| ||||||||| ||||||| || ||||||||||| |||||| | |||| |||||||| || |||||||||||||||||||||||||||||| |
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| T |
38383822 |
ttatggggtggccacgataatggaaggagaccaatgaaatccttcttaacattgtttgagttacagttgattatcatttttgcactcactcaaatatgta |
38383723 |
T |
|
| Q |
121 |
gttttcttctcaaacctttgagactccctcaattccttccacaaatgattgtaagtaaatccaattgacataatttt |
197 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38383722 |
gtttccttctcaaacctttgagactccctcaattccttccacaaatgattgtaagtaaatccaattgacatattttt |
38383646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 37844103 - 37844314
Alignment:
| Q |
21 |
ttatgggctggccacgaaaatggaaagacaccaatgaaattcttctttcccatgttcgagttacaattagttatcatttttgcactcactcaaatatgta |
120 |
Q |
| |
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||||||| |||||| |||||||||| || ||||||||||| ||||| || |||| ||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
37844103 |
ttatggggtggccatgaaaatggaaggagaccaatgaaatctttcttgaccttgtttgagttacaattggttatcatttttgcactcacgcaaatatgtc |
37844202 |
T |
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| Q |
121 |
gttttcttctcaaacctttgagactccctcaattccttccacaaatgattgtaagtaaatccaattgacataatttt-aagaagaattatttctttagcg |
219 |
Q |
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|||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| ||||| || |||||| |||||||||| | |
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| T |
37844203 |
gttttcttctcaaatctttgagactccctcaatttctttcacaaatgattgtaagtatatccaattgacatgattttcaaaaagaataatttctttagtg |
37844302 |
T |
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| Q |
220 |
catgtttagatt |
231 |
Q |
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|||||||||||| |
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| T |
37844303 |
catgtttagatt |
37844314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 33 - 231
Target Start/End: Original strand, 37838552 - 37838750
Alignment:
| Q |
33 |
cacgaaaatggaaagacaccaatgaaattcttctttcccatgttcgagttacaattagttatcatttttgcactcactcaaatatgtagttttcttctca |
132 |
Q |
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|||||||||| || || ||||||||||| || || || |||| ||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||| |
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| T |
37838552 |
cacgaaaatgaaaggagaccaatgaaatcttttttgaccttgtttgagttacaattggttatcatttttgcactcacacaaatatgcagtttccttctca |
37838651 |
T |
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| Q |
133 |
aacctttgagactccctcaattccttccacaaatgattgtaagtaaatccaattgacataattttaagaagaattatttctttagcgcatgtttagatt |
231 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||| |||||||| ||||| |||| | || ||| |||| |||| ||||||||||||| |
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| T |
37838652 |
aacctttgagactccctaaattcctttcacaaatgattgtaagtatatccaatttacatactttttaaaaaaataatttttttaatgcatgtttagatt |
37838750 |
T |
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