View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8136_low_9 (Length: 247)

Name: NF8136_low_9
Description: NF8136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8136_low_9
NF8136_low_9
[»] chr3 (4 HSPs)
chr3 (126-231)||(51422967-51423070)
chr3 (112-231)||(32059594-32059715)
chr3 (148-230)||(11684656-11684736)
chr3 (112-151)||(53161685-53161724)
[»] chr4 (6 HSPs)
chr4 (126-230)||(19847709-19847811)
chr4 (126-231)||(19847408-19847511)
chr4 (126-230)||(19848256-19848358)
chr4 (148-231)||(19846891-19846972)
chr4 (126-185)||(7056020-7056080)
chr4 (112-146)||(18807796-18807830)
[»] chr8 (3 HSPs)
chr8 (113-231)||(8210566-8210680)
chr8 (126-231)||(9288786-9288889)
chr8 (20-113)||(22218318-22218417)
[»] scaffold0442 (1 HSPs)
scaffold0442 (126-229)||(14056-14157)
[»] chr2 (1 HSPs)
chr2 (136-231)||(38974530-38974623)
[»] chr5 (2 HSPs)
chr5 (126-180)||(23196117-23196171)
chr5 (126-173)||(41612842-41612887)
[»] scaffold0167 (1 HSPs)
scaffold0167 (130-230)||(16476-16575)
[»] chr7 (5 HSPs)
chr7 (112-173)||(9334209-9334269)
chr7 (115-152)||(37013821-37013858)
chr7 (113-169)||(23651560-23651615)
chr7 (110-146)||(5377672-5377708)
chr7 (121-173)||(26643038-26643089)
[»] chr6 (3 HSPs)
chr6 (126-173)||(23158121-23158166)
chr6 (126-173)||(18763106-18763151)
chr6 (126-173)||(20014730-20014775)
[»] scaffold0022 (1 HSPs)
scaffold0022 (112-173)||(152918-152977)


Alignment Details
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 51422967 - 51423070
Alignment:
Q  126 atacctattaataaagacaatgcttttgggtttggtgtagcctattttgcattccaattttatcccctctaactttcacttattatgtaacttccaattt 225  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||| || ||||||    
T  51422967 atacctattaataaaggcaatacttttgggtttggtgtagcctattttgcattccaattttat--cctctaacttccacttattatgtaattttcaattt 51423064  T
Q  226 taacag 231  Q
    ||||||    
T  51423065 taacag 51423070  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 231
Target Start/End: Original strand, 32059594 - 32059715
Alignment:
Q  112 atctatacctattaat----acctattaataaagacaatgcttttgggtttggtgtagcctattttgcattccaattttatcccctctaactttcactta 207  Q
    ||||||||||||||||    |||||||||||||| |||| ||||| | |||||||||||||||||| |||| |||||||||  |||||||||| ||||||    
T  32059594 atctatacctattaatttatacctattaataaaggcaattctttttgatttggtgtagcctattttacatttcaattttat--cctctaacttccactta 32059691  T
Q  208 ttatgtaacttccaattttaacag 231  Q
    |||||||||||  |||||||||||    
T  32059692 ttatgtaacttttaattttaacag 32059715  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 11684656 - 11684736
Alignment:
Q  148 cttttgggtttggtgtagcctattttgcattccaattttatcccctctaactttcacttattatgtaacttccaattttaaca 230  Q
    ||||| |||||||||| | ||||||| ||||| ||||||||||  |||||||| || ||||||||||||||| || |||||||    
T  11684656 cttttcggtttggtgttgtctattttacattctaattttatcc--tctaacttccatttattatgtaacttctaaatttaaca 11684736  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 151
Target Start/End: Complemental strand, 53161724 - 53161685
Alignment:
Q  112 atctatacctattaatacctattaataaagacaatgcttt 151  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  53161724 atctatacctattaatacctattaataaaggcaatacttt 53161685  T

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Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 126 - 230
Target Start/End: Original strand, 19847709 - 19847811
Alignment:
Q  126 atacctattaataaagacaatgcttttgggtttggtgtagcctattttgcattccaattttatcccctctaactttcacttattatgtaacttccaattt 225  Q
    ||||||||||||| || |||| ||||| |||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  19847709 atacctattaatagaggcaattctttttggtttggtgtagcctattttacattccaattttat--cctctaactttcacttattatgtaacttccaattt 19847806  T
Q  226 taaca 230  Q
    |||||    
T  19847807 taaca 19847811  T

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Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 19847408 - 19847511
Alignment:
Q  126 atacctattaataaagacaatgcttttgggtttggtgtagcctattttgcattccaattttatcccctctaactttcacttattatgtaacttccaattt 225  Q
    |||||||||||||||  |||| ||||| |||||||||||||||||||| ||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  19847408 atacctattaataaaagcaattctttttggtttggtgtagcctattttacattccaattttat--cctctaacttccacttattatgtaacttccaattt 19847505  T
Q  226 taacag 231  Q
    ||||||    
T  19847506 taacag 19847511  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 126 - 230
Target Start/End: Original strand, 19848256 - 19848358
Alignment:
Q  126 atacctattaataaagacaatgcttttgggtttggtgtagcctattttgcattccaattttatcccctctaactttcacttattatgtaacttccaattt 225  Q
    ||||||||||| |||| |||| ||||| |||||||||||||||||||| |||||||| |||||  |||||||||| ||||||||||||||||||||||||    
T  19848256 atacctattaagaaaggcaattctttttggtttggtgtagcctattttacattccaagtttat--cctctaacttccacttattatgtaacttccaattt 19848353  T
Q  226 taaca 230  Q
    |||||    
T  19848354 taaca 19848358  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 19846891 - 19846972
Alignment:
Q  148 cttttgggtttggtgtagcctattttgcattccaattttatcccctctaactttcacttattatgtaacttccaattttaacag 231  Q
    ||||| |||||||||||||||||||| |||| |||||||||||  |||||||| ||||||||||||||||| ||||||||||||    
T  19846891 ctttttggtttggtgtagcctattttacatttcaattttatcc--tctaacttccacttattatgtaactttcaattttaacag 19846972  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 7056080 - 7056020
Alignment:
Q  126 atacctattaataaagacaatgcttttg-ggtttggtgtagcctattttgcattccaattt 185  Q
    |||||||||||||||| |||| |||||  |||||||||||||||||||| |||||||||||    
T  7056080 atacctattaataaaggcaattcttttttggtttggtgtagcctattttacattccaattt 7056020  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 18807796 - 18807830
Alignment:
Q  112 atctatacctattaatacctattaataaagacaat 146  Q
    |||||||||||||||||||||||||||||| ||||    
T  18807796 atctatacctattaatacctattaataaaggcaat 18807830  T

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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 231
Target Start/End: Original strand, 8210566 - 8210680
Alignment:
Q  113 tctatacctattaatacctattaataaagacaatgcttttgggtttggtgtagcctattttgcattccaattttatcccctctaactttcacttattatg 212  Q
    |||||| ||||||||  |||||||||||| || | ||||| |||||||||||||||||||| |||| |||||||||  |||||||||| |||||||||||    
T  8210566 tctatatctattaat--ctattaataaaggcactactttttggtttggtgtagcctattttacatttcaattttat--cctctaacttccacttattatg 8210661  T
Q  213 taacttccaattttaacag 231  Q
    |||||||||||||||||||    
T  8210662 taacttccaattttaacag 8210680  T

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Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 126 - 231
Target Start/End: Original strand, 9288786 - 9288889
Alignment:
Q  126 atacctattaataaagacaatgcttttgggtttggtgtagcctattttgcattccaattttatcccctctaactttcacttattatgtaacttccaattt 225  Q
    |||| ||||||||||| |||| ||||| |||||||||||||||||||| ||||||||||||||  ||||||||||  |||||||||||||||| ||||||    
T  9288786 atacttattaataaaggcaatactttttggtttggtgtagcctattttacattccaattttat--cctctaacttcaacttattatgtaactttcaattt 9288883  T
Q  226 taacag 231  Q
    ||||||    
T  9288884 taacag 9288889  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 22218417 - 22218318
Alignment:
Q  20 actcataaggggcggctgtagatcacggaagccaaaaagagacatcaaatcggtatgctgttgct------atctttttgttgtgtaatgttgctttaat 113  Q
    ||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||      |||||||||||||||||||||||||||||    
T  22218417 actcacaaggggcggctgtggatcacggaagcctaaaagagacatcaaatcggtattctgttgctaacttcatctttttgttgtgtaatgttgctttaat 22218318  T

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Target: scaffold0442 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 229
Target Start/End: Complemental strand, 14157 - 14056
Alignment:
Q  126 atacctattaataaagacaatgcttttgggtttggtgtagcctattttgcattccaattttatcccctctaactttcacttattatgtaacttccaattt 225  Q
    |||||||||||||||| || | |||||  ||||||||||||||||||| ||||||||||||||  ||| |||||| ||||||||||||||||||||||||    
T  14157 atacctattaataaaggcattactttttagtttggtgtagcctattttacattccaattttat--cctataacttccacttattatgtaacttccaattt 14060  T
Q  226 taac 229  Q
    ||||    
T  14059 taac 14056  T

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Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 136 - 231
Target Start/End: Original strand, 38974530 - 38974623
Alignment:
Q  136 ataaagacaatgcttttgggtttggtgtagcctattttgcattccaattttatcccctctaactttcacttattatgtaacttccaattttaacag 231  Q
    |||||| |||| ||||| |||||||||||||||||||| ||||||||||||||  ||| |||||| |||| |||||||||||||||||||||||||    
T  38974530 ataaaggcaattctttttggtttggtgtagcctattttacattccaattttat--cctttaacttccactcattatgtaacttccaattttaacag 38974623  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 23196171 - 23196117
Alignment:
Q  126 atacctattaataaagacaatgcttttgggtttggtgtagcctattttgcattcc 180  Q
    |||||||||||||||| |||| ||||| |||||||||||||||||||| ||||||    
T  23196171 atacctattaataaaggcaatactttttggtttggtgtagcctattttacattcc 23196117  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 41612842 - 41612887
Alignment:
Q  126 atacctattaataaagacaatgcttttgggtttggtgtagcctatttt 173  Q
    |||||||||||||||| |||| ||||  ||||||||||||||||||||    
T  41612842 atacctattaataaaggcaatacttt--ggtttggtgtagcctatttt 41612887  T

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Target: scaffold0167 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 16575 - 16476
Alignment:
Q  130 ctattaataaagacaatgcttttgggtttggtgtagcctattttg--cattccaattttatcccctctaactttcacttattatgtaacttccaatttta 227  Q
    |||||||||||| ||||  |||||| ||||||||||||||||||   ||||||| | |||| |  |||||||| |||||||||||||||||||||||| |    
T  16575 ctattaataaaggcaatttttttgg-tttggtgtagcctattttatacattccagtattattc--tctaacttccacttattatgtaacttccaatttca 16479  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 9334269 - 9334209
Alignment:
Q  112 atctatacctattaatacctattaataaagacaatgcttttgggtttggtgtagcctatttt 173  Q
    |||||||||||||||||||||||||||||| |||  | |||  |||||||||||||||||||    
T  9334269 atctatacctattaatacctattaataaaggcaaaacattt-tgtttggtgtagcctatttt 9334209  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 37013821 - 37013858
Alignment:
Q  115 tatacctattaatacctattaataaagacaatgctttt 152  Q
    |||||||||||||||||||||||||||||||| |||||    
T  37013821 tatacctattaatacctattaataaagacaatactttt 37013858  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 169
Target Start/End: Original strand, 23651560 - 23651615
Alignment:
Q  113 tctatacctattaatacctattaataaagacaatgcttttgggtttggtgtagccta 169  Q
    ||||||| ||||||||||||||||||||| |||| ||||| | ||||||||||||||    
T  23651560 tctatacttattaatacctattaataaaggcaatactttt-gttttggtgtagccta 23651615  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 5377672 - 5377708
Alignment:
Q  110 taatctatacctattaatacctattaataaagacaat 146  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  5377672 taatctatacctattaatatctattaataaaggcaat 5377708  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 26643038 - 26643089
Alignment:
Q  121 tattaatacctattaataaagacaatgcttttgggtttggtgtagcctatttt 173  Q
    ||||||||||||||||||||| |||| |||||   ||||||||||||||||||    
T  26643038 tattaatacctattaataaaggcaatactttt-cttttggtgtagcctatttt 26643089  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 23158121 - 23158166
Alignment:
Q  126 atacctattaataaagacaatgcttttgggtttggtgtagcctatttt 173  Q
    ||||||||||||||||||||| |||||  |||||||||||||||||||    
T  23158121 atacctattaataaagacaatactttt--gtttggtgtagcctatttt 23158166  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 18763106 - 18763151
Alignment:
Q  126 atacctattaataaagacaatgcttttgggtttggtgtagcctatttt 173  Q
    ||||||||||||||||||| | |||||  |||||||||||||||||||    
T  18763106 atacctattaataaagacagtactttt--gtttggtgtagcctatttt 18763151  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 20014730 - 20014775
Alignment:
Q  126 atacctattaataaagacaatgcttttgggtttggtgtagcctatttt 173  Q
    |||||||||||||||| |||| |||||  |||||||||||||||||||    
T  20014730 atacctattaataaaggcaatactttt--gtttggtgtagcctatttt 20014775  T

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Target: scaffold0022 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 152977 - 152918
Alignment:
Q  112 atctatacctattaatacctattaataaagacaatgcttttgggtttggtgtagcctatttt 173  Q
    |||||||||||||||||||||||||||||| |||  | |||  |||| ||||||||||||||    
T  152977 atctatacctattaatacctattaataaaggcaaaacattt--gtttcgtgtagcctatttt 152918  T

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