View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8137_high_2 (Length: 554)
Name: NF8137_high_2
Description: NF8137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8137_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 17 - 543
Target Start/End: Original strand, 39935 - 40457
Alignment:
| Q |
17 |
acaaccatctagtcatgttgctcctgctgttagtgttagcgctactgaattgaaaaatgagagcagagacgcagcaaacgatgaagaagaaacgttccgg |
116 |
Q |
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| T |
39935 |
acaaccatctagtgatgttgctcctgctgttagtgttagcgctactgaattgaaaaatgagagcagagacgcatcacacgatgaagaagaaacgttccgg |
40034 |
T |
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| Q |
117 |
aaaataagggagacgatacatgagaagcttagccatgcccgtcaactgctaaactctgcatcttctgctcgaaaggatgccatcaggagtagaagaaagg |
216 |
Q |
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| T |
40035 |
aaaataagggagacgatacatgagaagcttagccatgcccgtcaactgctaaactctgcatcttctgctcgaaaggatgccatcaggagtagaagaaagg |
40134 |
T |
|
| Q |
217 |
cctttcagaatgctaatcttgcttctcttaaatacatggaacttgagaaccaattagaacaagcttgtgaagctgaagattttgaaaccgctgaaatggt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40135 |
cctttcagaatgctaatcttgcttctcttaaatacatggaacttgagaaccaattagaacaagcttgtgaagctgaagattttgaaaccgctgaaatggt |
40234 |
T |
|
| Q |
317 |
tagccaacacctttctgcctctgagaaggacaaacaaatctgtaccgaatcattgaggcaagctgatgcctttatcgatgctttagatttgaaattgcag |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40235 |
tagccaacacctttctgcctctgagaaggacaaacaaatctgtaccgaatcattgaggcaagctgatgcctttatcgatgctttagatttgaaattgcag |
40334 |
T |
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| Q |
417 |
catgccctcgactctcacatagctgctgaggaagaatctgcaacattactccaccattatgcaacggtcagtatattctattcttttaagacatctatgt |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40335 |
catgccctcgactctcacatagctgctgaggaagaatctgcaacattactccaccattatgcaacggtcagtatattctattcttttaagacatctatgt |
40434 |
T |
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| Q |
517 |
atgactgactactctaggttcatctca |
543 |
Q |
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| T |
40435 |
a----tgactactctaggttcatctca |
40457 |
T |
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