View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8137_high_3 (Length: 484)
Name: NF8137_high_3
Description: NF8137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8137_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 2486812 - 2486345
Alignment:
| Q |
1 |
ggggaagttttgaattagcttcaaggaatcagtagaaacataaaagcttatcaatccctgattataaactaccaaattcagactaaccggctggtcccga |
100 |
Q |
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| T |
2486812 |
ggggaagttttgaattagcttcaaggaatcagtagaaacataaaagcttatcaatccctcattataaactaccaaattcagactaaccggctggtcccga |
2486713 |
T |
|
| Q |
101 |
gagcagaatagtccggcttgcaggagcaagattccgtgtatatttagaaacctctgcatgctttaaatggacataagcagcacttgtaagcaacacgcgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2486712 |
gagcagaatagtccggcttgcaggagcaagattccgtgtatatttagaaacctctgcatgctttaaatggacataagcagcacttgtaagcaacacgcgt |
2486613 |
T |
|
| Q |
201 |
gtctgctcactgtcatgataaatacaatgagaaagatcttatcagaaccaatattgaatcgtgttaataaaatcaattagagattaaacattatgatttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2486612 |
gtctgctcactgtcatgataaatacaatgagaaagatcttatcagaaccaatattgaatcgtgttaataaaatcaattagagatcaaacattatgatttg |
2486513 |
T |
|
| Q |
301 |
ctagttgtcattattatttgctagatcaaaatacagacactgtaggcgacaccatatgtgtttatttatctccatctttttcttacattttatctttaca |
400 |
Q |
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||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2486512 |
ctagtcgtcattattatttgctagatcaaaatacagacacggtaggcgacacca-atgtgtttatttatctccatctttttcttacattttatccttaca |
2486414 |
T |
|
| Q |
401 |
agtctacacatttaaaaaataaacacagaaatcaaatgacacggtattcaacatcaaaattgtcaaaaa |
469 |
Q |
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| T |
2486413 |
agtctacacatttaaaaaataaacacagaaatcaaatgacacggtattcaacatcaaaattgtcaaaaa |
2486345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 82 - 213
Target Start/End: Original strand, 41594824 - 41594955
Alignment:
| Q |
82 |
actaaccggctggtcccgagagcagaatagtccggcttgcaggagcaagattccgtgtatatttagaaacctctgcatgctttaaatggacataagcagc |
181 |
Q |
| |
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||||||| || || || ||||| |||||||| | ||| |||||||||||||| || |||||||||||||| || |||||||||||||| ||||| ||||| |
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| T |
41594824 |
actaaccagcagggccagagagaagaatagttctgctagcaggagcaagattacgcgtatatttagaaacttcagcatgctttaaatgaacatatgcagc |
41594923 |
T |
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| Q |
182 |
acttgtaagcaacacgcgtgtctgctcactgt |
213 |
Q |
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|||||||||||| || || ||||||||||||| |
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| T |
41594924 |
acttgtaagcaaaacccgcgtctgctcactgt |
41594955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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