View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8137_low_1 (Length: 686)
Name: NF8137_low_1
Description: NF8137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8137_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 17 - 686
Target Start/End: Original strand, 30398384 - 30399066
Alignment:
| Q |
17 |
catcaataacaaaagccgcatcctgtttgagaaaggaaaagnnnnnnnngataaacttcaaaccattttaaattatcttgctcccaaagcatgcatgcat |
116 |
Q |
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| T |
30398384 |
catcaataacaaaagccgcatcctgtttgagaaaggaaaagaacaaaaagataaacttgaaaccattttaaattatcttgctcccaaagcatgcatgcat |
30398483 |
T |
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| Q |
117 |
agccagttcaattaagcatattgttaggcatatgctaaaagtttctcatagttacttaattaagggttggttaagaacttacttgttgcacaagtaagct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30398484 |
agccagttcaattaagcatattgttaggcatatgctaaaagttgctcatagttacttagttaagggttagttaagaacttacttgttgcacaagtaagct |
30398583 |
T |
|
| Q |
217 |
agtttgttagaaactaactaagcacttagctatatatatgccttgtatctatgttgttaatcaataagattcacttttacct--cacatattaacgtact |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
30398584 |
agtttgttagaaactaactaagcacttagctatatatatgccttgtatctatgttgttaatcaataagattcacttttacctcacacatattaacgtact |
30398683 |
T |
|
| Q |
315 |
ggccacaacaaaagcagaataaacaagnnnnnnnncacattcagttagcaaagttctccaatcactgggatcctgatattgatttgatacagaatattgc |
414 |
Q |
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|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30398684 |
ggtcacaacaaaagcagaataaacaagaaaaaaaacacattcagttagcaaagttctccaatcactgggatcctgatattgatttgatacagaatattgc |
30398783 |
T |
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| Q |
415 |
ataagcagtgcctta-----------ggaccagaggtggttatctgcattgttagaag-actctctcaaaatcttccataaacctcatcctttgtttttc |
502 |
Q |
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| T |
30398784 |
ataagcagtgccttaggatcagaggtggatcagaggtggttatctgcattgttagaagaactctctcaaaatcttccataaacctcatcctttgtttttt |
30398883 |
T |
|
| Q |
503 |
catcaatcaatagaatttgtcccttgggttccataagtcatgagaggcaaattaaaacaataaagggttggtgtaaattagaaacattttgaaaaataat |
602 |
Q |
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| T |
30398884 |
catcaatcaatagaatttgttcctt-ggttccataagtcatgagaggcaaattaaaacaataaagggttggtgtaaattagaaacattttgaaaaataat |
30398982 |
T |
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| Q |
603 |
ccatgatactaattgaacagccaaagttcgtagcaactttacgctcttgagatacaaatagttagtaccatgcccacttggtct |
686 |
Q |
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| T |
30398983 |
ccatgatactaattgaacagccaaagttcgtagcaactttacgctcttgagatacaaatagttagtaccatgcccacttggtct |
30399066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 197 - 302
Target Start/End: Complemental strand, 4690060 - 4689953
Alignment:
| Q |
197 |
acttgttgcacaagtaagctagtttgttagaaactaactaagcacttagctatatatatgccttgta-tctatgt-tgttaatcaataagattcactttt |
294 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||| |||| | |||| | ||||||||| ||||||||| |||| |
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| T |
4690060 |
acttgttgcacaagtaagctagtttgttagcaactaactaagcatttagctataaatatgtcttgcaccctatatgtgttaatcactaagattcattttt |
4689961 |
T |
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| Q |
295 |
acctcaca |
302 |
Q |
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||| |||| |
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| T |
4689960 |
accccaca |
4689953 |
T |
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