View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8137_low_11 (Length: 265)
Name: NF8137_low_11
Description: NF8137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8137_low_11 |
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| [»] scaffold0608 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 46933209 - 46933444
Alignment:
| Q |
19 |
ccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatcttacaaagattcatggttctataataagtctcaagtttggcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46933209 |
ccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatcttacaaagattcatggttctataataagtctcaagtttggcc |
46933308 |
T |
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| Q |
119 |
gaataaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttctgaccaatgaccagttcttgtctaatagaaccattccacaatctgtgtc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46933309 |
gaataaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttctgaccaatgaccagttcttgtctaatagaaccattccacaatctgtgtc |
46933408 |
T |
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| Q |
219 |
ggttctcaaccacgagcattatagtcttgctttcat |
254 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
46933409 |
ggttctcaaccacgagcattatagtcttgctttcat |
46933444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 19 - 254
Target Start/End: Original strand, 46926344 - 46926579
Alignment:
| Q |
19 |
ccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatcttacaaagattcatggttctataataagtctcaagtttggcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || || ||||| || | || |||||||| || |||| |||||||||||||||| |
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| T |
46926344 |
ccaatcatagggaacctccttgaattaggagaaaaacctcacaagtcattggccaagctagcgaaaattcatggccctttaatgagtctcaagtttggcc |
46926443 |
T |
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| Q |
119 |
gaataaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttctgaccaatgaccagttcttgtctaatagaaccattccacaatctgtgtc |
218 |
Q |
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| T |
46926444 |
aaataaccactattgttatctcctcagcaacaatggctaaagaggttctcctaaccaatgacaagttcttgtcaaagagaaacatacctcaaactgtgtc |
46926543 |
T |
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| Q |
219 |
ggttctcaaccacgagcattatagtcttgctttcat |
254 |
Q |
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||||||||||| ||||| ||||||||||||||||| |
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| T |
46926544 |
agttctcaaccatgagcagtatagtcttgctttcat |
46926579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 253
Target Start/End: Complemental strand, 11107711 - 11107480
Alignment:
| Q |
22 |
atcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatcttacaaagattcatggttctataataagtctcaagtttggccgaa |
121 |
Q |
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||||||||||||||||||||||||||| |||| || |||||||| || || || ||| | || || ||||| || |||| ||||||||| | || | || |
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| T |
11107711 |
atcatagggaacctccttgaattaggacaaaagccccacaaatcattggctaaacttgccaaaatatatggtcctttaatgagtctcaagctagggcaaa |
11107612 |
T |
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| Q |
122 |
taaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttctgaccaatgaccagttcttgtctaatagaaccattccacaatctgtgtcggt |
221 |
Q |
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|||||||||| || |||| ||| | | ||||| || | || ||||| ||||||||| | |||||||| ||||| || |||||||||||||||| || |
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| T |
11107611 |
taaccactgttgttatctcttcatcaacaatggccaaacaagttcttctcaccaatgacaaattcttgtcaaataggactgttccacaatctgtgtcagt |
11107512 |
T |
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| Q |
222 |
tctcaaccacgagcattatagtcttgctttca |
253 |
Q |
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||||||||| || || ||||||||||| |||| |
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| T |
11107511 |
tctcaaccatgaccaatatagtcttgcattca |
11107480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 253
Target Start/End: Complemental strand, 3150 - 2919
Alignment:
| Q |
22 |
atcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatcttacaaagattcatggttctataataagtctcaagtttggccgaa |
121 |
Q |
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||||||||||||||||||||||||||| |||| || |||||||| || || || ||| | || || ||||| || |||| ||||||||| | || | || |
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| T |
3150 |
atcatagggaacctccttgaattaggacaaaagccccacaaatcattggctaaacttgccaaaatatatggtcctttaatgagtctcaagctagggcaaa |
3051 |
T |
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| Q |
122 |
taaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttctgaccaatgaccagttcttgtctaatagaaccattccacaatctgtgtcggt |
221 |
Q |
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|||||||||| || |||| ||| | | ||||| || | || ||||| ||||||||| | |||||||| ||||| || |||||||||||||||| || |
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| T |
3050 |
taaccactgttgttatctcttcatcaacaatggccaaacaagttcttctcaccaatgacaaattcttgtcaaataggactgttccacaatctgtgtcagt |
2951 |
T |
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| Q |
222 |
tctcaaccacgagcattatagtcttgctttca |
253 |
Q |
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||||||||| || || ||||||||||| |||| |
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| T |
2950 |
tctcaaccatgaccaatatagtcttgcattca |
2919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 74
Target Start/End: Complemental strand, 29975427 - 29975376
Alignment:
| Q |
23 |
tcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaa |
74 |
Q |
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||||||| ||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
29975427 |
tcataggaaacctccttcaattagggaaaaaacctcacaaatccttagccaa |
29975376 |
T |
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