View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8137_low_12 (Length: 254)
Name: NF8137_low_12
Description: NF8137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8137_low_12 |
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| [»] chr7 (13 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 54 - 254
Target Start/End: Complemental strand, 7063285 - 7063085
Alignment:
| Q |
54 |
tgaattactgtcaagagagcatattttgcaatgaacgtagtagttgaataaaagtgcttaaattttatattggaatggttaaagtttaaatggtattagt |
153 |
Q |
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| T |
7063285 |
tgaataactgtcaagagagcatattttgcaatgaacgtagtagttgaataaaagtgcttaaattttatattggaatggttaaagtttaaatggtattagt |
7063186 |
T |
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| Q |
154 |
attcatgattagaagagctttgagtttgatttacttttgacagtatttgtttgatttgggggatgtactacttgaaggagtggatttgtttttaaataaa |
253 |
Q |
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| T |
7063185 |
attcatgattagaagagctttgagtttgatttacttttgacagtacttgtttgatttgggggatgtactacttgaaggagtggatttgtttttaaataaa |
7063086 |
T |
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| Q |
254 |
t |
254 |
Q |
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| T |
7063085 |
t |
7063085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 7058819 - 7058725
Alignment:
| Q |
18 |
aataagatatgaatgttggaaagttgcttaaatttgtgaattactgtcaagagagcatattttgcaatgaacgtagtagttgaataaaagtgctt |
112 |
Q |
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| T |
7058819 |
aataacatatgaatgttggaaagttgcttaaatttatgaattactgtcaagagagcatattttgcaatcaacgtagtagtcgaataaaagtgctt |
7058725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 7014052 - 7013973
Alignment:
| Q |
18 |
aataagatatgaatgttggaaagttgcttaaatttgtgaattactgtcaagagagcatattttgcaatgaacgtagtagt |
97 |
Q |
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| T |
7014052 |
aataacatatgaatgttggaaagttgcttaaatttatgaattactgtcaagagagcatattttgcaatgaatgtagtagt |
7013973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 7029410 - 7029331
Alignment:
| Q |
18 |
aataagatatgaatgttggaaagttgcttaaatttgtgaattactgtcaagagagcatattttgcaatgaacgtagtagt |
97 |
Q |
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| T |
7029410 |
aataacatatgaatgttggaaagttgcttaaatttatgaattactgtcaagagagcatattttgcaatgaatgtagtagt |
7029331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 7013717 - 7013672
Alignment:
| Q |
209 |
ttgggggatgtactacttgaaggagtggatttgtttttaaataaat |
254 |
Q |
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| T |
7013717 |
ttgggggctgtactacttgaaggagtggattagtttttaaataaat |
7013672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 209 - 254
Target Start/End: Complemental strand, 7029075 - 7029030
Alignment:
| Q |
209 |
ttgggggatgtactacttgaaggagtggatttgtttttaaataaat |
254 |
Q |
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| T |
7029075 |
ttgggggctgtactacttgaaggagtggattagtttttaaataaat |
7029030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 208 - 254
Target Start/End: Complemental strand, 7058379 - 7058333
Alignment:
| Q |
208 |
tttgggggatgtactacttgaaggagtggatttgtttttaaataaat |
254 |
Q |
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| T |
7058379 |
tttgggggttgtcctacttgaaggagtggattagtttttaaataaat |
7058333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 7029245 - 7029204
Alignment:
| Q |
117 |
tttatattggaatggttaaagtttaaatggtattagtattca |
158 |
Q |
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| T |
7029245 |
tttatgttggaatggttaaagtttagatggtattagtattca |
7029204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 7056716 - 7056680
Alignment:
| Q |
216 |
atgtactacttgaaggagtggatttgtttttaaataa |
252 |
Q |
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|||||||||||||||||||||||| |||||||||||| |
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| T |
7056716 |
atgtactacttgaaggagtggattagtttttaaataa |
7056680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 7010869 - 7010836
Alignment:
| Q |
219 |
tactacttgaaggagtggatttgtttttaaataa |
252 |
Q |
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| T |
7010869 |
tactacttgaaggagtggattagtttttaaataa |
7010836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 7013887 - 7013846
Alignment:
| Q |
117 |
tttatattggaatggttaaagtttaaatggtattagtattca |
158 |
Q |
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| T |
7013887 |
tttatgttgaaatggttaaagtttagatggtattagtattca |
7013846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 7026227 - 7026194
Alignment:
| Q |
219 |
tactacttgaaggagtggatttgtttttaaataa |
252 |
Q |
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| T |
7026227 |
tactacttgaaggagtggattagtttttaaataa |
7026194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 7058657 - 7058608
Alignment:
| Q |
117 |
tttatattggaatggttaaagtttaaatggtattagtattcatgattaga |
166 |
Q |
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| T |
7058657 |
tttatattggaatggttgaagtttagcttgtattaggattcatgattaga |
7058608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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