View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8137_low_16 (Length: 233)
Name: NF8137_low_16
Description: NF8137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8137_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 3013691 - 3013904
Alignment:
| Q |
1 |
agaaataaataagttaaacaatgggttttccttaaaaaagagttaaacggtggtttgaaaaccctaatctgaaaaatcgtgaagcatcaaagaagatgaa |
100 |
Q |
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| T |
3013691 |
agaaataaataagttaaacagtcggttttccttaaaaaagagttaaacggtggtttgaaaaccctaatctgaaaaatagtgaagcatcaaagaagatgaa |
3013790 |
T |
|
| Q |
101 |
taaaggtaatggtaactaaaatcgattgattattattattatgcttgaattttgtgtaattattcaagacaacatgtttgaattttgcttgatgctgctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3013791 |
taaaggtaatggtaactaaaatcgattgattattattattatgcttgaattttgtgtaattattcaagacaacatgttcgaattttgcttgatgctgctt |
3013890 |
T |
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| Q |
201 |
taatatcaataata |
214 |
Q |
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|||||||||||||| |
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| T |
3013891 |
taatatcaataata |
3013904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 40672857 - 40672796
Alignment:
| Q |
90 |
aagaagatgaataaaggtaatggtaactaaaatcgattgattattattattatgcttgaattttg |
154 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
40672857 |
aagaagatgaatgaaggtaatgataactaaaatcgattgattatta---ttatgcttgaattttg |
40672796 |
T |
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