View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8137_low_2 (Length: 577)
Name: NF8137_low_2
Description: NF8137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8137_low_2 |
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| [»] scaffold0168 (1 HSPs) |
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Alignment Details
Target: scaffold0168 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: scaffold0168
Description:
Target: scaffold0168; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 19 - 567
Target Start/End: Complemental strand, 19468 - 18920
Alignment:
| Q |
19 |
gaaaatgggaaagctcgtggtgaaggagtcggggctcgtgcttccgagtgtctcgctttggcaatatagggagaagaagacttaactttcaatggttttc |
118 |
Q |
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| T |
19468 |
gaaaatgggaaagctcgtggtgaaggagtcggggctcgtgcttccgagtgtctcgctttggcaatatagggagaagaagacttaactttcaatggttttc |
19369 |
T |
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| Q |
119 |
cacaacaagaacatttctgagtactattcctatcaagctgcatcattaagccatcatcatctttcaaactcaactgaataggttgtccatcctcaacaaa |
218 |
Q |
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| T |
19368 |
cacaacaagaacatttctgagtactatttctatcaagctgcatcattaagccatcatcatctttcaaactcaactgaataggttgtccatcctcaacaaa |
19269 |
T |
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| Q |
219 |
gcattccaaatccttatgcaaaatccctacaagtgatttataggtatcacaatccgattccttctccgttgcgaatgaaagtaaacaaccttcacacatt |
318 |
Q |
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| T |
19268 |
gcattccaaatccttatgcaaaatccctacaagtgatttataggtatcacaatccgattccttctccgttgcgaatgaaagcaaacaaccttcacacatt |
19169 |
T |
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| Q |
319 |
ttccttatgtcagagagtttcttgtgattatggcaaaacgcaagagacgacatatctttcttgtgagcctcacacaccgactcgttgtaataaaaatcag |
418 |
Q |
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| T |
19168 |
ttccttatgtcagagagtttcttgtgattatggcaaaatgcaagagacgacatatctttcttgtgagcctcacacaccgactcgttgtaataaaaatcag |
19069 |
T |
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| Q |
419 |
gatttctatgaaccattgcgtgatcgaaccttgtgcataaccaacaagggattttcaattcaaaaaatcttgcgtactcattagcaatgaatgctagaaa |
518 |
Q |
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| T |
19068 |
gatttctatgaaccattgcgtgatcgaaccttgtgcataaccaacaagggattttcaattcaaaaaatcttgcatactcattggcaatgaatgctagaaa |
18969 |
T |
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| Q |
519 |
cccatcaaggaagagtatgaaaattagcacccattcaagaataatatag |
567 |
Q |
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| T |
18968 |
cccatcaaggaagagtatgaatattagcacccattcaagaaaaatatag |
18920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 211 - 420
Target Start/End: Complemental strand, 44350359 - 44350150
Alignment:
| Q |
211 |
tcaacaaagcattccaaatccttatgcaaaatccctacaagtgatttataggtatcacaatccgattccttctccgttgcgaatgaaagtaaacaacctt |
310 |
Q |
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||||||||||| ||||||| ||||| ||||||||||||||| || |||||||||||||||| |||||||||| ||||||||||||||| ||||| |||| |
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| T |
44350359 |
tcaacaaagcaatccaaattcttattcaaaatccctacaagagacttataggtatcacaatttgattccttctgcgttgcgaatgaaagcaaacaccctt |
44350260 |
T |
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| Q |
311 |
cacacattttccttatgtcagagagtttcttgtgattatggcaaaacgcaagagacgacatatctttcttgtgagcctcacacaccgactcgttgtaata |
410 |
Q |
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||||||| |||||| | ||||| |||||||||||||||| ||||| || | |||||| | |||||||| ||||||||||||| || ||||||||| |
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| T |
44350259 |
cacacatcttccttgtatcagaaagtttcttgtgattataacaaaatgccaaagacgaaacgtctttcttatgagcctcacacatggaactgttgtaata |
44350160 |
T |
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| Q |
411 |
aaaatcagga |
420 |
Q |
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| T |
44350159 |
aaaattagga |
44350150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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