View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8137_low_6 (Length: 337)
Name: NF8137_low_6
Description: NF8137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8137_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 37202505 - 37202187
Alignment:
| Q |
1 |
gaagctcattgaagagtctgagaatgcattagaaaaatgtgaagcacaaaagaaaaaagtgtccgaaatgttggaagcaatatgtgctgaagaaactgct |
100 |
Q |
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| T |
37202505 |
gaagctcattgaagagtctgagaatgcattggaaaaatgtgaagcacaaaagaaaaaagtgtccgaaatgttggaagcaatatgtgctgaagaaactgct |
37202406 |
T |
|
| Q |
101 |
tgcaaagagagattggctagagcgaaggatgagtctaccgcgatatctataacagttgggtatgcgaaatctaaagttaagtgctttctgaaatgctcag |
200 |
Q |
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| T |
37202405 |
tgcaaagagagattggctagagcgaaggatgagtctaccgcgatatctataacagttgggtatgccaaatctaaagttaagtgctttctgaaatgctcag |
37202306 |
T |
|
| Q |
201 |
tggttgatggtttgatttagcgatgcaatttcatcttcatgttttcttcatggtagtggttttaggactcacttaatgcattgtaactattttgatttga |
300 |
Q |
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| T |
37202305 |
tggttgatggtttgatttagcgatgcaatttcatcttcatgttttcttcatggtagtggttttaggactcgcttaatgcattgtaactattttgatttga |
37202206 |
T |
|
| Q |
301 |
agtcactgtttcctaactc |
319 |
Q |
| |
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||||||||||||||||||| |
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| T |
37202205 |
agtcactgtttcctaactc |
37202187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 79 - 220
Target Start/End: Complemental strand, 37183356 - 37183215
Alignment:
| Q |
79 |
aatatgtgctgaagaaactgcttgcaaagagagattggctagagcgaaggatgagtctaccgcgatatctataacagttgggtatgcgaaatctaaagtt |
178 |
Q |
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| T |
37183356 |
aatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggtatgctaaatctaaagtc |
37183257 |
T |
|
| Q |
179 |
aagtgctttctgaaatgctcagtggttgatggtttgatttag |
220 |
Q |
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| T |
37183256 |
aaacgctttctgaaatgctcagtggtagatggtttgttttag |
37183215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 79 - 220
Target Start/End: Complemental strand, 37194488 - 37194347
Alignment:
| Q |
79 |
aatatgtgctgaagaaactgcttgcaaagagagattggctagagcgaaggatgagtctaccgcgatatctataacagttgggtatgcgaaatctaaagtt |
178 |
Q |
| |
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|||||||| | |||| |||||||||||| |||||||||| | ||||||||| |||||| || | ||||||| ||||||||||||||| ||||||||||| |
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| T |
37194488 |
aatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggtatgctaaatctaaagtc |
37194389 |
T |
|
| Q |
179 |
aagtgctttctgaaatgctcagtggttgatggtttgatttag |
220 |
Q |
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| T |
37194388 |
aaacgctttctgaaatgctcagtggtagatggtttgttttag |
37194347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 244
Target Start/End: Complemental strand, 37180298 - 37180125
Alignment:
| Q |
71 |
ttggaagcaatatgtgctgaagaaactgcttgcaaagagagattggctagagcgaaggatgagtctaccgcgatatctataacagttgggtatgcgaaat |
170 |
Q |
| |
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||||||| |||||||| | |||| |||||||||||||| |||||| | ||| ||| ||||||||||| | |||||| ||||||| ||||| | || |
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| T |
37180298 |
ttggaagaaatatgtgttaaagagactgcttgcaaagaaagattgaccgcagcaaagaatgagtctacctcaatatctcaaacagttcggtattgcacat |
37180199 |
T |
|
| Q |
171 |
ctaaagttaagtgctttctgaaatgctcagtggttgatggtttgatttagcgatgcaatttcatcttcatgttt |
244 |
Q |
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||||||| | ||||||||||| |||||||| | |||||||| |||||| | ||||||||||| ||| ||||| |
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| T |
37180198 |
ctaaagtcagtcgctttctgaaacgctcagtgatggatggtttaatttagtgttgcaatttcatattcctgttt |
37180125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 244
Target Start/End: Original strand, 5365596 - 5365769
Alignment:
| Q |
71 |
ttggaagcaatatgtgctgaagaaactgcttgcaaagagagattggctagagcgaaggatgagtctaccgcgatatctataacagttgggtatgcgaaat |
170 |
Q |
| |
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||||||| |||||||| | |||| |||||||||||||| |||||| || ||| ||| |||| |||||| |||||||| ||||| ||||| | || |
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| T |
5365596 |
ttggaagaaatatgtgttaaagagactgcttgcaaagaaagattgactgcagcaaagaatgaatctacctcgatatctcaaacagaccggtattacacat |
5365695 |
T |
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| Q |
171 |
ctaaagttaagtgctttctgaaatgctcagtggttgatggtttgatttagcgatgcaatttcatcttcatgttt |
244 |
Q |
| |
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|||||| | ||||| ||||| |||||||| | |||||||| |||||| | ||||||||||| ||| ||||| |
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| T |
5365696 |
ctaaagccagacgctttttgaaacgctcagtgatggatggtttaatttagtgttgcaatttcatattcctgttt |
5365769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 5366039 - 5365955
Alignment:
| Q |
183 |
gctttctgaaatgctcagtggttgatggtttgatttagcgatgcaatttcatcttcatgttttcttcatggtagtggttttagga |
267 |
Q |
| |
|
||||||||||| |||||||| | |||||||| |||||| | |||| |||||| || |||||| |||||||| || ||||||||| |
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| T |
5366039 |
gctttctgaaacgctcagtgatggatggtttaatttagtgttgcagtttcatatttctgttttattcatggtggttgttttagga |
5365955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 20450626 - 20450565
Alignment:
| Q |
183 |
gctttctgaaatgctcagtggttgatggtttgatttagcgatgcaatttcatcttcatgttt |
244 |
Q |
| |
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||||||||||| |||||||| | |||||||| |||||| | ||||||||||| ||| ||||| |
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| T |
20450626 |
gctttctgaaacgctcagtgatggatggtttaatttagtgttgcaatttcatattcttgttt |
20450565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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