View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8137_low_8 (Length: 307)
Name: NF8137_low_8
Description: NF8137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8137_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 23177358 - 23177645
Alignment:
| Q |
1 |
agaactcgaccaagtactacgtaggtatatggttcaaaaaggtagcaaatgacaagattgtttgggttgccaacagagacaacgcatttcaaacatcctc |
100 |
Q |
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| T |
23177358 |
agaactcgaccaagtactatgtaggtatatggttcaaaaaggtagcaaatgacaagattgtttgggttgccaacagagacaacgcatttcaaacatcctc |
23177457 |
T |
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| Q |
101 |
ggtgtttcttaccattgaccatgatggtaatattgtaatcatagatggagatatgatgtcgtacgtgactggtgcaccaaacagcagcaacaatagcatt |
200 |
Q |
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| T |
23177458 |
ggtgtttcttaccattgaccatgatggtaatattgtaatcatagatggagatatgatgtcctacgtgactggtgctccaaacagcagcaacaatagcatt |
23177557 |
T |
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| Q |
201 |
aggaatagtacctacgcaaccctcttggacacaggaaacttggtactggtgaataattctaaccaagcaattttatggcagagttttg |
288 |
Q |
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| T |
23177558 |
aggaatagtacctacgcaaccctcttggacacaggaaacttggtactggtgaataattctaaccaagcaattttatggcagagttttg |
23177645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 15 - 288
Target Start/End: Original strand, 23186510 - 23186774
Alignment:
| Q |
15 |
tactacgtaggtatatggttcaaaaaggtagcaaatgacaagattgtttgggttgccaacagagacaacgcatttcaaacatcctcggtgtttcttacca |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||||||| |
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| T |
23186510 |
tactacgtaggtatatggttcaaaaaggtagcaaatgacaagattgtttgggttgccaacagagattacgaacctcaaacatcctcggcgtttcttacca |
23186609 |
T |
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| Q |
115 |
ttgaccatgatggtaatattgtaatcatagatggagatatgatgtcgtacgtgactggtgcaccaaacagcagcaacaatagcattaggaatagtaccta |
214 |
Q |
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|| || |||||||||| ||||| ||||||||||||| |||||| |||||||||||||| ||| || | ||||||| | || ||||||||| |
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| T |
23186610 |
ttcacgatgatggtaacattgtcatcatagatggaggtatgatccgctacgtgactggtgctcca---agtaacaacaatcgtat------tagtaccta |
23186700 |
T |
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| Q |
215 |
cgcaaccctcttggacacaggaaacttggtactggtgaataattctaaccaagcaattttatggcagagttttg |
288 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| |
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| T |
23186701 |
cgcaaccctgttggacacaggaaacttggtactggtgaataagtctaaccaagtaattttatggcagagctttg |
23186774 |
T |
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