View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8138_high_2 (Length: 590)

Name: NF8138_high_2
Description: NF8138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8138_high_2
NF8138_high_2
[»] chr1 (23 HSPs)
chr1 (315-590)||(49033496-49033770)
chr1 (86-244)||(49033267-49033425)
chr1 (86-245)||(28443287-28443446)
chr1 (315-436)||(28443095-28443216)
chr1 (108-243)||(48997001-48997136)
chr1 (108-226)||(50907584-50907702)
chr1 (108-217)||(33298776-33298885)
chr1 (112-224)||(43784936-43785048)
chr1 (11-61)||(28443464-28443514)
chr1 (11-61)||(49033195-49033245)
chr1 (329-430)||(24965806-24965907)
chr1 (108-226)||(28540940-28541047)
chr1 (485-559)||(35577459-35577533)
chr1 (315-385)||(48996857-48996927)
chr1 (498-590)||(11821198-11821292)
chr1 (315-385)||(44488270-44488340)
chr1 (324-385)||(28541147-28541208)
chr1 (108-184)||(44488460-44488536)
chr1 (191-226)||(44488429-44488464)
chr1 (324-385)||(50907424-50907485)
chr1 (494-590)||(33403070-33403166)
chr1 (112-184)||(37313431-37313503)
chr1 (157-221)||(48955643-48955707)
[»] chr2 (16 HSPs)
chr2 (315-470)||(939679-939834)
chr2 (109-245)||(939904-940040)
chr2 (501-587)||(939600-939686)
chr2 (112-224)||(18206685-18206797)
chr2 (325-559)||(24928727-24928965)
chr2 (325-559)||(25678341-25678579)
chr2 (108-222)||(28033598-28033712)
chr2 (11-61)||(940072-940122)
chr2 (324-385)||(11815698-11815759)
chr2 (485-559)||(11573702-11573776)
chr2 (135-221)||(15424297-15424383)
chr2 (315-430)||(31119299-31119413)
chr2 (14-61)||(31119000-31119047)
chr2 (531-590)||(37892989-37893048)
chr2 (112-224)||(27333032-27333141)
chr2 (112-173)||(20931106-20931167)
[»] chr4 (25 HSPs)
chr4 (86-245)||(51718513-51718672)
chr4 (315-470)||(51718288-51718443)
chr4 (86-226)||(634158-634298)
chr4 (86-226)||(40451332-40451472)
chr4 (108-226)||(32309934-32310052)
chr4 (102-226)||(850209-850333)
chr4 (109-221)||(42562773-42562885)
chr4 (325-481)||(40923504-40923660)
chr4 (325-479)||(40451079-40451233)
chr4 (328-479)||(634400-634552)
chr4 (498-590)||(36217908-36218000)
chr4 (108-184)||(39463416-39463492)
chr4 (11-61)||(634087-634137)
chr4 (11-61)||(51718695-51718745)
chr4 (324-430)||(32310151-32310257)
chr4 (485-559)||(24972459-24972533)
chr4 (324-385)||(850430-850491)
chr4 (485-590)||(55523763-55523868)
chr4 (485-559)||(636519-636593)
chr4 (157-243)||(38649865-38649951)
chr4 (135-224)||(13505415-13505504)
chr4 (485-577)||(12586236-12586328)
chr4 (500-590)||(33164455-33164545)
chr4 (520-590)||(36498944-36499014)
chr4 (324-385)||(21058507-21058568)
[»] chr8 (15 HSPs)
chr8 (315-497)||(9384696-9384878)
chr8 (126-238)||(9384956-9385068)
chr8 (108-226)||(14094929-14095047)
chr8 (108-226)||(10529264-10529382)
chr8 (400-497)||(23558852-23558949)
chr8 (146-226)||(37229972-37230052)
chr8 (108-188)||(37229896-37229976)
chr8 (528-586)||(9384658-9384716)
chr8 (315-438)||(10529048-10529171)
chr8 (315-390)||(37230141-37230216)
chr8 (520-590)||(34276230-34276300)
chr8 (324-385)||(14094768-14094829)
chr8 (315-379)||(22721282-22721346)
chr8 (157-224)||(16995655-16995722)
chr8 (324-385)||(20520600-20520661)
[»] chr3 (14 HSPs)
chr3 (86-245)||(39688334-39688493)
chr3 (315-436)||(39688563-39688684)
chr3 (108-226)||(34440285-34440403)
chr3 (149-226)||(53630130-53630207)
chr3 (11-61)||(39688262-39688312)
chr3 (135-224)||(2811434-2811523)
chr3 (485-590)||(15041941-15042046)
chr3 (485-590)||(34086775-34086880)
chr3 (135-224)||(41071219-41071308)
chr3 (485-590)||(19866771-19866876)
chr3 (447-559)||(3860736-3860848)
chr3 (135-224)||(7627146-7627235)
chr3 (498-590)||(53827609-53827701)
chr3 (485-590)||(44836413-44836518)
[»] chr5 (14 HSPs)
chr5 (315-559)||(6702439-6702683)
chr5 (86-245)||(6702753-6702901)
chr5 (108-226)||(2740906-2741024)
chr5 (108-226)||(13272061-13272179)
chr5 (485-590)||(30491730-30491835)
chr5 (485-590)||(33144119-33144224)
chr5 (315-385)||(13271902-13271972)
chr5 (11-48)||(6702916-6702953)
chr5 (316-388)||(22553127-22553199)
chr5 (135-242)||(24211179-24211286)
chr5 (520-559)||(5504805-5504844)
chr5 (315-385)||(2740745-2740815)
chr5 (135-224)||(8431209-8431298)
chr5 (106-134)||(36933128-36933156)
[»] scaffold0262 (1 HSPs)
scaffold0262 (86-226)||(9808-9948)
[»] chr7 (25 HSPs)
chr7 (86-226)||(41799563-41799702)
chr7 (107-226)||(8525106-8525225)
chr7 (108-226)||(38455409-38455527)
chr7 (108-228)||(13553111-13553231)
chr7 (112-224)||(21065904-21066016)
chr7 (325-509)||(41799801-41799985)
chr7 (316-404)||(13552936-13553024)
chr7 (447-559)||(44552599-44552711)
chr7 (323-432)||(8525322-8525431)
chr7 (315-389)||(8231734-8231807)
chr7 (315-385)||(38455249-38455319)
chr7 (112-224)||(12625296-12625408)
chr7 (155-223)||(16728672-16728740)
chr7 (155-223)||(17705744-17705812)
chr7 (11-50)||(41799491-41799530)
chr7 (149-223)||(17715723-17715797)
chr7 (498-559)||(26604121-26604182)
chr7 (498-590)||(30359741-30359834)
chr7 (17-61)||(13553277-13553321)
chr7 (145-188)||(16728631-16728674)
chr7 (145-188)||(17705703-17705746)
chr7 (463-590)||(20379581-20379708)
chr7 (164-223)||(29033520-29033579)
chr7 (193-245)||(8229975-8230027)
chr7 (486-558)||(38791984-38792056)
[»] scaffold0408 (1 HSPs)
scaffold0408 (108-226)||(5271-5389)
[»] scaffold1212 (2 HSPs)
scaffold1212 (108-226)||(1374-1492)
scaffold1212 (324-385)||(1590-1651)
[»] chr6 (10 HSPs)
chr6 (111-226)||(35007094-35007209)
chr6 (86-245)||(24122472-24122630)
chr6 (394-491)||(25400900-25400997)
chr6 (317-405)||(24122311-24122399)
chr6 (108-226)||(6287900-6288007)
chr6 (135-222)||(31020815-31020902)
chr6 (112-226)||(18790840-18790954)
chr6 (145-224)||(19222657-19222736)
chr6 (315-395)||(19222486-19222566)
chr6 (324-382)||(6288106-6288164)
[»] scaffold0046 (1 HSPs)
scaffold0046 (329-430)||(75127-75228)
[»] scaffold0010 (2 HSPs)
scaffold0010 (315-385)||(34555-34625)
scaffold0010 (145-228)||(34384-34468)
[»] scaffold1763 (1 HSPs)
scaffold1763 (485-545)||(301-361)
[»] scaffold0695 (1 HSPs)
scaffold0695 (324-385)||(1620-1681)
[»] scaffold0041 (1 HSPs)
scaffold0041 (525-559)||(24340-24374)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 6e-97; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 315 - 590
Target Start/End: Original strand, 49033496 - 49033770
Alignment:
Q  315 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgtttt 414  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||  ||||||||||||||||| || ||    
T  49033496 gaagtagtataataatcacttacttgatattgtggacgaaatttggtttgaatggcgcaaaaatggtggaattcggatttgagggtgaaaatttcgtctt 49033595  T
Q  415 ttgaaaagttgcaaaatggaggaatggaggttctgtgttgctggaaactgacttaaataacgtcgtgcatcttaagtcacgctgcgtgacttaagacatg 514  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||| || |    
T  49033596 ttgaaaagttgaaaaatggaggaatggaggtcctgtgttgctggaaactgacttaagtaacgtagcgcatcttaagtcacgctgcgtgacttaagtcacg 49033695  T
Q  515 tttctcttacaactagcgcatgttaactcacactacgcaagttaagttgcattgggacattttggacatttacttt 590  Q
    |||||||||||||||||||||||||| | || ||||||||||||| |||| | | | || ||||||||||||||||    
T  49033696 tttctcttacaactagcgcatgttaattaacgctacgcaagttaaattgcgtagaggca-tttggacatttacttt 49033770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 86 - 244
Target Start/End: Original strand, 49033267 - 49033425
Alignment:
Q  86 ttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacat 185  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  49033267 ttgaaacatttcattgaacacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactaccacattgtaccttaaacaacat 49033366  T
Q  186 ctacgcaacaattcctaagttaaatcatcactaacaatcataatctttaacatgcaaga 244  Q
    |||  |||||||||  | |||||||||||||||||||||||||||||||||| ||||||    
T  49033367 ctaaacaacaattctcatgttaaatcatcactaacaatcataatctttaacaagcaaga 49033425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 28443446 - 28443287
Alignment:
Q  86 ttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacat 185  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||| ||||||||||| ||||||||||    
T  28443446 ttgagacatttcatcgaacacgtagtgtgcatttttcaaacaactatgtaattatacatttactaaaccctaaactaccacattgtaccataaacaacat 28443347  T
Q  186 ctacgcaacaattcctaagttaaatcatcactaacaatcataatctttaacatgcaagac 245  Q
    |||  |||||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  28443346 ctaaacaacaattccaaagttaaatcattactaacaatcataatctttaacatgcaagac 28443287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 315 - 436
Target Start/End: Complemental strand, 28443216 - 28443095
Alignment:
Q  315 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgtttt 414  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||  |||| |||||||| ||   ||||    
T  28443216 gaagtagtataataatcacttacttgatattgtggacgaaatttggtttgaatgacgcaataatggtgaaattcggatttgggggtgaaatttgcatttt 28443117  T
Q  415 ttgaaaagttgcaaaatggagg 436  Q
    ||||||||||| ||||||||||    
T  28443116 ttgaaaagttgaaaaatggagg 28443095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 108 - 243
Target Start/End: Complemental strand, 48997136 - 48997001
Alignment:
Q  108 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 207  Q
    ||||||||| |||||||||||||| ||||||| ||| ||| |||||||||||||| |||||||||| ||||||||| ||||  |||||||| ||||||||    
T  48997136 tagtgtgcaattttcaaacaactaggtaatctaacaatttgtaaaccctaaactaccacattgtactctaaacaacttctaaacaacaatttctaagtta 48997037  T
Q  208 aatcatcactaacaatcataatctttaacatgcaag 243  Q
    | ||||||||||||||||| |   ||||||||||||    
T  48997036 attcatcactaacaatcatcaaaattaacatgcaag 48997001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 50907702 - 50907584
Alignment:
Q  108 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 207  Q
    ||||||||| |||||||||||||| ||||| | | | ||| |||||||||||||| |||||||||| ||||||||||||||  |||||||||||||||||    
T  50907702 tagtgtgcaattttcaaacaactaggtaatataataatttgtaaaccctaaactaccacattgtactctaaacaacatctaaacaacaattcctaagtta 50907603  T
Q  208 aatcatcactaacaatcat 226  Q
    | |||||||||||||||||    
T  50907602 attcatcactaacaatcat 50907584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 108 - 217
Target Start/End: Original strand, 33298776 - 33298885
Alignment:
Q  108 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 207  Q
    ||||||||| |||||||||||||| ||||||| ||| ||| |||||||||||||| ||||||||||  |||||||| ||||  |||||||||||||||||    
T  33298776 tagtgtgcaattttcaaacaactaggtaatctaacaatttgtaaaccctaaactagcacattgtactttaaacaacttctaaacaacaattcctaagtta 33298875  T
Q  208 aatcatcact 217  Q
    | ||||||||    
T  33298876 attcatcact 33298885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 43784936 - 43785048
Alignment:
Q  112 gtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatc 211  Q
    ||||| |||||||||||||| | | ||| ||| ||||||||| |||||||| |||||||||| ||||||||||||||  ||||| ||||||| |||| ||    
T  43784936 gtgcaattttcaaacaactaagaattctaacaatttctaaacactaaactaccacattgtactctaaacaacatctaaacaacagttcctaacttaattc 43785035  T
Q  212 atcactaacaatc 224  Q
    |||| ||||||||    
T  43785036 atcagtaacaatc 43785048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 28443514 - 28443464
Alignment:
Q  11 atcatcaacattaacaaacatagctctaactaattacatccttaacaatcc 61  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28443514 atcatcaacattaacaaacatagctctaactaattacatcattaacaatcc 28443464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 49033195 - 49033245
Alignment:
Q  11 atcatcaacattaacaaacatagctctaactaattacatccttaacaatcc 61  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  49033195 atcatcaacattaacaaacatagctctaactaattacatcattaacaatcc 49033245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 430
Target Start/End: Original strand, 24965806 - 24965907
Alignment:
Q  329 atcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgttttttgaaaagttgcaa 428  Q
    |||||||||||||||||||||  | |||| | ||||| ||||||||||||||||||| |||   |||  || |||||||||||||||||| |||||| ||    
T  24965806 atcacttacttgatattgtgggagaaattggctttgattggcgcaagaatggtgaaaatcgcacttggaggagaaaattttgttttttgagaagttggaa 24965905  T
Q  429 aa 430  Q
    ||    
T  24965906 aa 24965907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 28540940 - 28541047
Alignment:
Q  108 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 207  Q
    ||||||||| |||||||||||| | || |||| ||| ||| |||||||||||||| |||||||||| |||||||||           |||||||||||||    
T  28540940 tagtgtgcaattttcaaacaaccaggtcatctaacaatttgtaaaccctaaactaccacattgtactctaaacaac-----------aattcctaagtta 28541028  T
Q  208 aatcatcactaacaatcat 226  Q
    | |||||||||||||||||    
T  28541029 attcatcactaacaatcat 28541047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 485 - 559
Target Start/End: Original strand, 35577459 - 35577533
Alignment:
Q  485 cttaagtcacgctgcgtgacttaagacatgtttctcttacaactagcgcatgttaactcacactacgcaagttaa 559  Q
    ||||| |||||||||||||||||||  | |||   |||| ||||||||||||||||||||| |||||||||||||    
T  35577459 cttaactcacgctgcgtgacttaagttacgttctccttataactagcgcatgttaactcacgctacgcaagttaa 35577533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 315 - 385
Target Start/End: Complemental strand, 48996927 - 48996857
Alignment:
Q  315 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 385  Q
    |||||||  |||| |||||||||||||||||||||  | |||| | |||||||||||||||||||||||||    
T  48996927 gaagtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatggtgaaa 48996857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 498 - 590
Target Start/End: Complemental strand, 11821292 - 11821198
Alignment:
Q  498 gcgtgacttaagacatgtttctcttacaacta--gcgcatgttaactcacactacgcaagttaagttgcattgggacattttggacatttacttt 590  Q
    ||||||||||||  | |||||||||| |||||  ||||||||||||||||| |||| |||||||  ||||| ||  |||||||||| ||||||||    
T  11821292 gcgtgacttaagttacgtttctcttataactatagcgcatgttaactcacaatacgtaagttaacatgcataggagcattttggacttttacttt 11821198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 385
Target Start/End: Complemental strand, 44488340 - 44488270
Alignment:
Q  315 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 385  Q
    |||||||  |||| |||||||||||||||||||||    |||| | |||||||||||||||||||||||||    
T  44488340 gaagtagggtaatcatcacttacttgatattgtgggaaaaattggctttgaatggcgcaagaatggtgaaa 44488270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 28541147 - 28541208
Alignment:
Q  324 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 385  Q
    |||| ||||||||||||||||| |||| | |||| | ||||||||||||||||||| |||||    
T  28541147 taatcatcacttacttgatattttggaagaaattggctttgaatggcgcaagaatgatgaaa 28541208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 44488536 - 44488460
Alignment:
Q  108 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaaca 184  Q
    ||||||| | ||||| |||||||| ||||||| ||| ||| |||||||||||||| || ||| ||| ||||||||||    
T  44488536 tagtgtgaaattttcgaacaactaggtaatctaacaatttgtaaaccctaaactaccatattatactctaaacaaca 44488460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 226
Target Start/End: Complemental strand, 44488464 - 44488429
Alignment:
Q  191 caacaattcctaagttaaatcatcactaacaatcat 226  Q
    |||||||||||||||||| |||||||||||||||||    
T  44488464 caacaattcctaagttaattcatcactaacaatcat 44488429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 385
Target Start/End: Complemental strand, 50907485 - 50907424
Alignment:
Q  324 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 385  Q
    |||| ||| ||||||||||||| |||| | |||| | ||||||||||||||||||| |||||    
T  50907485 taatcatcgcttacttgatattttggaagaaattggctttgaatggcgcaagaatgatgaaa 50907424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 494 - 590
Target Start/End: Original strand, 33403070 - 33403166
Alignment:
Q  494 cgctgcgtgacttaagacatgtttctcttacaactagcgcatgttaactcacactacgcaagttaagttgcattgggacattttggacatttacttt 590  Q
    ||||||||||||||||  | |||   |||| ||||||| |||||||||||||  ||||||||||||  ||| | ||| |||||| ||| ||||||||    
T  33403070 cgctgcgtgacttaagttacgttctccttataactagcacatgttaactcacgttacgcaagttaacatgcgtaggggcattttcgacttttacttt 33403166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 112 - 184
Target Start/End: Original strand, 37313431 - 37313503
Alignment:
Q  112 gtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaaca 184  Q
    ||||| |||| ||||||||| | ||||| ||| ||||||||||||||| |  | |||||||| ||||||||||    
T  37313431 gtgcaatttttaaacaactaagaaatctaacaatttctaaaccctaaattgccgcattgtactctaaacaaca 37313503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 48955707 - 48955643
Alignment:
Q  157 aaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaaca 221  Q
    |||||| ||||||  || |||||||||||||||   ||||||||||| |||| ||||||||||||    
T  48955707 aaactaccacatttcactctaaacaacatctacaatacaattcctaacttaattcatcactaaca 48955643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 5e-73; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 315 - 470
Target Start/End: Complemental strand, 939834 - 939679
Alignment:
Q  315 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgtttt 414  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  939834 gaagtagtataataatcacttacttgatattgtggatgaaatttggtttgaatggcgcaagaatggtgaaattcgaatatgagggtgaaaattttgtttt 939735  T
Q  415 ttgaaaagttgcaaaatggaggaatggaggttctgtgttgctggaaactgacttaa 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  939734 ttgaaaagttgcaaaatggaggaatggaggttctgtgttgctggaaactgacttaa 939679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 109 - 245
Target Start/End: Complemental strand, 940040 - 939904
Alignment:
Q  109 agtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaa 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  940040 agtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctaagcaacaattcctaagttaa 939941  T
Q  209 atcatcactaacaatcataatctttaacatgcaagac 245  Q
    |||||||||||||||||||||||||||||||||||||    
T  939940 atcatcactaacaatcataatctttaacatgcaagac 939904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 501 - 587
Target Start/End: Complemental strand, 939686 - 939600
Alignment:
Q  501 tgacttaagacatgtttctcttacaactagcgcatgttaactcacactacgcaagttaagttgcattgggacattttggacatttac 587  Q
    ||||||||| || |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||    
T  939686 tgacttaagtcacgtttctcttacaactagcgcatgttaactcacgctacacaagttaagttgcattggggcattttggacatttac 939600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 18206685 - 18206797
Alignment:
Q  112 gtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatc 211  Q
    ||||| |||||||||||||| | ||||| ||| |||||||||||||||||| |||||||||| ||||||||||||||  ||||| ||||||| |||| ||    
T  18206685 gtgcaattttcaaacaactaagaaatctaacaatttctaaaccctaaactaccacattgtactctaaacaacatctaaacaacagttcctaacttaattc 18206784  T
Q  212 atcactaacaatc 224  Q
    |||||||||||||    
T  18206785 atcactaacaatc 18206797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 325 - 559
Target Start/End: Complemental strand, 24928965 - 24928727
Alignment:
Q  325 aataatcacttacttgatattgtggacggaatttgg-tttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgttttttgaaaagt 423  Q
    ||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| |||| || |  |||| |||||||| ||| |||| | |||||||    
T  24928965 aataatcacttacttgatattgtggac-gaatttggctttgaatgacgcaagaatgatgaattttggatttgggggtgaaattttcgtttctagaaaagt 24928867  T
Q  424 tgcaaaatggaggaatggaggttctgtgttgctggaaactgacttaaataacgtcgtgcatcttaagtcacgctgcgtgacttaagacatgtttctctta 523  Q
    ||  |||||  ||||  |   |  |||||||||| |||||||||||| |||||||| |   ||||| ||||||||||||||||||| || |||   ||||    
T  24928866 tgggaaatgagggaactgtactgatgtgttgctgaaaactgacttaagtaacgtcgcgtgacttaactcacgctgcgtgacttaagtcacgttctcctta 24928767  T
Q  524 ----caactagcgcatgttaactcacactacgcaagttaa 559  Q
         ||||||||||||||||||||| |||||||||||||    
T  24928766 taattaactagcgcatgttaactcacgctacgcaagttaa 24928727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 325 - 559
Target Start/End: Complemental strand, 25678579 - 25678341
Alignment:
Q  325 aataatcacttacttgatattgtggacggaatttggttt-gaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgttttttgaaaagt 423  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||| || |  |||| |||||||| ||| |||||| |||||||    
T  25678579 aataatcacttacttgatattgtggacg-aatttggttttgaatggcgcaagaatgatgaattttggatttgggggtgaaattttcgtttttagaaaagt 25678481  T
Q  424 tgcaaaatggaggaatggaggttctgtgttgctggaaactgacttaaataacgtcgtgcatcttaagtcacgctgcgtgacttaagacatgtttctctta 523  Q
    ||  |||||  ||||  |   |  |||| ||||| |||||||||||| |||||||| |   ||||| ||||||||| ||||||||| || |||   ||||    
T  25678480 tgggaaatgagggaactgtactgatgtgctgctgaaaactgacttaagtaacgtcgcgtgacttaactcacgctgcatgacttaagccacgttctcctta 25678381  T
Q  524 ----caactagcgcatgttaactcacactacgcaagttaa 559  Q
         ||||||||||||||||||||  |||||||||||||    
T  25678380 taattaactagcgcatgttaactcatgctacgcaagttaa 25678341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 28033712 - 28033598
Alignment:
Q  108 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 207  Q
    ||||||||| |||||||||||||| | |||||   | ||| |||||||||||||| | |||||||| ||||||||| ||||  |||||||||||||||||    
T  28033712 tagtgtgcaattttcaaacaactaggcaatctagtaatttgtaaaccctaaactaccgcattgtactctaaacaacttctaaacaacaattcctaagtta 28033613  T
Q  208 aatcatcactaacaa 222  Q
    |   |||||||||||    
T  28033612 atcaatcactaacaa 28033598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 940122 - 940072
Alignment:
Q  11 atcatcaacattaacaaacatagctctaactaattacatccttaacaatcc 61  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  940122 atcatcaacattaacaaacatagttctaactaattacatcattaacaatcc 940072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 324 - 385
Target Start/End: Complemental strand, 11815759 - 11815698
Alignment:
Q  324 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 385  Q
    |||| |||||||||||||||||||||  | |||| | |||||||||||||||||||||||||    
T  11815759 taatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatggtgaaa 11815698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 559
Target Start/End: Complemental strand, 11573776 - 11573702
Alignment:
Q  485 cttaagtcacgctgcgtgacttaagacatgtttctcttacaactagcgcatgttaactcacactacgcaagttaa 559  Q
    ||||| |||||||||||||||||||  | |||   |||| ||||||| ||||||||||||| |||||||||||||    
T  11573776 cttaactcacgctgcgtgacttaagttacgttctccttataactagcacatgttaactcacgctacgcaagttaa 11573702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 221
Target Start/End: Original strand, 15424297 - 15424383
Alignment:
Q  135 aatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaaca 221  Q
    ||||| ||| ||| |||||||||||||| ||||| | || ||||||||||||||    ||||||||||| |||| ||||||||||||    
T  15424297 aatctaacaatttataaaccctaaactaccacatagcactctaaacaacatctaaattacaattcctaatttaattcatcactaaca 15424383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 315 - 430
Target Start/End: Original strand, 31119299 - 31119413
Alignment:
Q  315 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcg-agtttgagggtgaaaattttgttt 413  Q
    |||||||  |||| ||||||||||||||||||||   | |||| | ||||||||| ||||||||||||||| ||| | || ||||  ||||||||||| |    
T  31119299 gaagtagattaatcatcacttacttgatattgtgagagaaattggctttgaatggtgcaagaatggtgaaaatcgcacttagagg--gaaaattttgtgt 31119396  T
Q  414 tttgaaaagttgcaaaa 430  Q
    || ||||||||| ||||    
T  31119397 ttagaaaagttggaaaa 31119413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 31119000 - 31119047
Alignment:
Q  14 atcaacattaacaaacatagctctaactaattacatccttaacaatcc 61  Q
    |||||||||||||||||||  ||||||||||| |||| ||||||||||    
T  31119000 atcaacattaacaaacatatttctaactaatttcatcattaacaatcc 31119047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 531 - 590
Target Start/End: Original strand, 37892989 - 37893048
Alignment:
Q  531 cgcatgttaactcacactacgcaagttaagttgcattgggacattttggacatttacttt 590  Q
    ||||||||||||||| ||||| |||||||  ||||| ||| |||||||||| ||||||||    
T  37892989 cgcatgttaactcacgctacgtaagttaacatgcataggggcattttggacttttacttt 37893048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 112 - 224
Target Start/End: Complemental strand, 27333141 - 27333032
Alignment:
Q  112 gtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatc 211  Q
    ||||| |||||||||||||| | ||||| ||| ||| |||||| ||||||| ||||||||||  ||   ||||||||  | ||||||||||  |||| |     
T  27333141 gtgcaattttcaaacaactaagaaatctaacaatttttaaaccataaactaccacattgtactgta---aacatctaaactacaattcctacattaatta 27333045  T
Q  212 atcactaacaatc 224  Q
    |||||||||||||    
T  27333044 atcactaacaatc 27333032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 20931167 - 20931106
Alignment:
Q  112 gtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtac 173  Q
    ||||| |||||||||||||| | ||||| ||  ||||||| |||||||||| ||||||||||    
T  20931167 gtgcaattttcaaacaactaagaaatctaacgatttctaatccctaaactaccacattgtac 20931106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 51718672 - 51718513
Alignment:
Q  86 ttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacat 185  Q
    |||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51718672 ttgagacatttcaccgaacacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactaccacattgtaccctaaacaacat 51718573  T
Q  186 ctacgcaacaattcctaagttaaatcatcactaacaatcataatctttaacatgcaagac 245  Q
    |||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51718572 ctaaacaacaattcctaagttaaatcatcactaacaatcataatctttaacatgcgagac 51718513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 315 - 470
Target Start/End: Complemental strand, 51718443 - 51718288
Alignment:
Q  315 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgtttt 414  Q
    |||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||  ||||| ||||||||||| |||||    
T  51718443 gaagtagtataataatcacttacttgatattgtggacgaattgtggtttgaatggcgcaagaatggtgaaattcggatttgaaggtgaaaatttcgtttt 51718344  T
Q  415 ttgaaaagttgcaaaatggaggaatggaggttctgtgttgctggaaactgacttaa 470  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  51718343 ttgaaaagttgaaaaatggaggaatggaggttctgtgttgctggaaactgacttaa 51718288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 634158 - 634298
Alignment:
Q  86 ttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacat 185  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||    
T  634158 ttgagacatttcaccgaacacgtagtgtgcatttttcaaacaactatgtaatctaacattttctaaaccctaaactaccacattgtaccttaaacaacat 634257  T
Q  186 ctacgcaacaattcctaagttaaatcatcactaacaatcat 226  Q
    |||  |||||||||||||||||  |  ||||||||||||||    
T  634258 ctaaacaacaattcctaagttatttggtcactaacaatcat 634298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 86 - 226
Target Start/End: Complemental strand, 40451472 - 40451332
Alignment:
Q  86 ttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacat 185  Q
    |||| |||||||| |||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||||| |||| ||||||||||| ||| ||||||    
T  40451472 ttgagacatttcaccgaacacgtagtgtgtatttttcaaacaactatgtaatctaacattttataaaccctatactaccacattgtaccgtaagcaacat 40451373  T
Q  186 ctacgcaacaattcctaagttaaatcatcactaacaatcat 226  Q
    |||  |||||||||||||||||  |  ||||||||||||||    
T  40451372 ctaaacaacaattcctaagttatttggtcactaacaatcat 40451332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 32309934 - 32310052
Alignment:
Q  108 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 207  Q
    ||||||||| |||||||||||||| ||||||| ||| ||| ||||||| |||||| |||||||||| ||||||||| ||||  |||||||||||||||||    
T  32309934 tagtgtgcaattttcaaacaactaggtaatctaacaatttgtaaacccgaaactaccacattgtactctaaacaacttctaaacaacaattcctaagtta 32310033  T
Q  208 aatcatcactaacaatcat 226  Q
    | |||||||||||||||||    
T  32310034 attcatcactaacaatcat 32310052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 850209 - 850333
Alignment:
Q  102 aatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcct 201  Q
    ||||| ||||||||| |||||||||||||| ||||||| ||  ||| |||||||||||||| | |||||||| ||||||||| ||||  |||||||||||    
T  850209 aatacatagtgtgcaattttcaaacaactaggtaatctaacgatttgtaaaccctaaactaccgcattgtactctaaacaacttctaaacaacaattcct 850308  T
Q  202 aagttaaatcatcactaacaatcat 226  Q
    ||||||| |||| ||||||||||||    
T  850309 aagttaattcattactaacaatcat 850333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 109 - 221
Target Start/End: Original strand, 42562773 - 42562885
Alignment:
Q  109 agtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaa 208  Q
    |||||||| |||| ||||||||| ||||||| ||| ||| |||||||||||||| |||||||||| ||||||||||||||  |||||||| |||||||||    
T  42562773 agtgtgcaatttttaaacaactaggtaatctaacaatttgtaaaccctaaactaccacattgtactctaaacaacatctaaacaacaatttctaagttaa 42562872  T
Q  209 atcatcactaaca 221  Q
     ||||||||||||    
T  42562873 ttcatcactaaca 42562885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 325 - 481
Target Start/End: Complemental strand, 40923660 - 40923504
Alignment:
Q  325 aataatcacttacttgatattgtggacggaatttggttt-gaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgttttttgaaaagt 423  Q
    ||||||||||||||||||| |||||||| |||||||||| |||||||||||||||| |||| || |  |||| |||||||| ||| |||||| |||||||    
T  40923660 aataatcacttacttgatagtgtggacg-aatttggttttgaatggcgcaagaatgatgaattttggatttgggggtgaaattttcgtttttggaaaagt 40923562  T
Q  424 tgcaaaatggaggaatggaggttctgtgttgctggaaactgacttaaataacgtcgtg 481  Q
    ||  |||||  ||||  | | | ||||||||||| |||||||||||| ||||||||||    
T  40923561 tgggaaatgagggaactgtgctgctgtgttgctgaaaactgacttaagtaacgtcgtg 40923504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 325 - 479
Target Start/End: Complemental strand, 40451233 - 40451079
Alignment:
Q  325 aataatcacttacttgatattgtggacggaatttgg-tttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgttttttgaaaagt 423  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||| ||||||   |||| ||||| |||| ||| |||| ||| |||||| |||||||    
T  40451233 aataatcacttacttgatattgtggac-gaatttggctttgaatggcacaagaacaatgaatttcgaatttgggggcgaaattttcgtttttggaaaagt 40451135  T
Q  424 tgcaaaatggaggaatggaggttctgtgttgctggaaactgacttaaataacgtcg 479  Q
    ||  |||||| ||||  | | | ||||||||||| |||||||||||| ||||||||    
T  40451134 tgggaaatgggggaactgtgctgctgtgttgctgaaaactgacttaagtaacgtcg 40451079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 328 - 479
Target Start/End: Original strand, 634400 - 634552
Alignment:
Q  328 aatcacttacttgatattgtggacggaatttgg-tttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgtttttt-gaaaagttg 425  Q
    |||||||||||||||||||||||| |||||||| |||||||||| |||||||| |||| ||||  |||| |||||||| ||| ||||||| |||||||||    
T  634400 aatcacttacttgatattgtggac-gaatttggctttgaatggctcaagaatgatgaatttcggatttgggggtgaaattttcgttttttggaaaagttg 634498  T
Q  426 caaaatggaggaatggaggttctgtgttgctggaaactgacttaaataacgtcg 479  Q
      |||||  ||||  | | | ||||||||||| ||||||| |||| ||||||||    
T  634499 ggaaatgagggaactgtgctgctgtgttgctgaaaactgatttaagtaacgtcg 634552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 498 - 590
Target Start/End: Complemental strand, 36218000 - 36217908
Alignment:
Q  498 gcgtgacttaagacatgtttctcttacaactagcgcatgttaactcacactacgcaagttaagttgcattgggacattttggacatttacttt 590  Q
    |||||||||||| || |||||||||| |||||| |||||||||||||| ||||| |||||||  ||| | ||| |||||||||| ||||||||    
T  36218000 gcgtgacttaagtcacgtttctcttataactagtgcatgttaactcacgctacgtaagttaacatgcgtaggggcattttggacttttacttt 36217908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 39463492 - 39463416
Alignment:
Q  108 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaaca 184  Q
    ||||||||| |||||||||||||| ||||||| ||| ||| | |||||||||||| |||||||||| ||||||||||    
T  39463492 tagtgtgcaattttcaaacaactaggtaatctaacaatttgtgaaccctaaactaccacattgtactctaaacaaca 39463416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 634087 - 634137
Alignment:
Q  11 atcatcaacattaacaaacatagctctaactaattacatccttaacaatcc 61  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  634087 atcatcaacattaacaaacatagctctaactaattatatcattaacaatcc 634137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 51718745 - 51718695
Alignment:
Q  11 atcatcaacattaacaaacatagctctaactaattacatccttaacaatcc 61  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  51718745 atcatcaacattaacaaacatagctctaactaattacttcattaacaatcc 51718695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 430
Target Start/End: Original strand, 32310151 - 32310257
Alignment:
Q  324 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcg-agtttgagggtgaaaattttgttttttgaaaag 422  Q
    |||| |||||||||||||||||||||  | |||| | ||||||||||||||||||||||||| ||| | || ||||| ||||||||||| ||| || |||    
T  32310151 taatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatggtgaaaatcgcacttggaggg-gaaaattttgtgtttggagaag 32310249  T
Q  423 ttgcaaaa 430  Q
    ||| ||||    
T  32310250 ttggaaaa 32310257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 485 - 559
Target Start/End: Complemental strand, 24972533 - 24972459
Alignment:
Q  485 cttaagtcacgctgcgtgacttaagacatgtttctcttacaactagcgcatgttaactcacactacgcaagttaa 559  Q
    ||||| |||||||||||||||||||  | |||   |||| ||||||||||||||||||||| |||||||||||||    
T  24972533 cttaactcacgctgcgtgacttaagttacgttctccttataactagcgcatgttaactcacgctacgcaagttaa 24972459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 850430 - 850491
Alignment:
Q  324 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 385  Q
    |||| |||||||||||||||||||||  | |||| | |||||||||||||||||||||||||    
T  850430 taatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatggtgaaa 850491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 485 - 590
Target Start/End: Complemental strand, 55523868 - 55523763
Alignment:
Q  485 cttaagtcacgctgcgtgacttaagacatgtttctcttacaactagcgcatgttaactcacactacgcaagttaagttgcattgggacattttggacatt 584  Q
    ||||| ||||||||||||||||||| ||||||   |||| ||||||||||||||||||||   ||| ||||||||  ||| | ||| |||||| ||| ||    
T  55523868 cttaactcacgctgcgtgacttaagtcatgttctccttataactagcgcatgttaactcaagatacacaagttaacatgcgtaggggcattttcgacttt 55523769  T
Q  585 tacttt 590  Q
    ||||||    
T  55523768 tacttt 55523763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 559
Target Start/End: Original strand, 636519 - 636593
Alignment:
Q  485 cttaagtcacgctgcgtgacttaagacatgtttctcttacaactagcgcatgttaactcacactacgcaagttaa 559  Q
    ||||| ||||||| ||||||||||| ||||||   |||| || |||||||| ||||||||| |||||||||||||    
T  636519 cttaactcacgctacgtgacttaagtcatgttctccttataattagcgcattttaactcacgctacgcaagttaa 636593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 38649951 - 38649865
Alignment:
Q  157 aaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatcataatctttaacatgcaag 243  Q
    |||||| ||||||  || ||||||||||||||  | ||||||||||| |||| ||||||||||||||| ||||   |||||||||||    
T  38649951 aaactaccacatttcactctaaacaacatctaaactacaattcctaacttaattcatcactaacaatcttaataactaacatgcaag 38649865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 13505415 - 13505504
Alignment:
Q  135 aatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatc 224  Q
    ||||| ||| |||||||||||||||||| ||||||| |  || |||||||||||  | ||| ||| ||| |||| |||||||||||||||    
T  13505415 aatctaacaatttctaaaccctaaactaccacattgcattcttaacaacatctaaactacagttcataacttaattcatcactaacaatc 13505504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 577
Target Start/End: Complemental strand, 12586328 - 12586236
Alignment:
Q  485 cttaagtcacgctgcgtgacttaagacatgtttctcttacaactagcgcatgttaactcacactacgcaagttaagttgcattgggacatttt 577  Q
    ||||| ||||| |||||||||||||  | |||   |||| ||||||||||||||||||||| ||| |||||||||  ||||| ||| ||||||    
T  12586328 cttaactcacgttgcgtgacttaagttacgttctccttataactagcgcatgttaactcacgctatgcaagttaacatgcataggggcatttt 12586236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 500 - 590
Target Start/End: Original strand, 33164455 - 33164545
Alignment:
Q  500 gtgacttaagacatgtttctcttacaactagcgcatgttaactcacactacgcaagttaagttgcattgggacattttggacatttacttt 590  Q
    ||||||||||  | |||||||||| ||||||| ||  |||| |||| ||||||| |||||  ||| | ||| |||||||||||||||||||    
T  33164455 gtgacttaagttacgtttctcttataactagcacaacttaagtcacgctacgcatgttaacatgcgtaggggcattttggacatttacttt 33164545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 520 - 590
Target Start/End: Complemental strand, 36499014 - 36498944
Alignment:
Q  520 cttacaactagcgcatgttaactcacactacgcaagttaagttgcattgggacattttggacatttacttt 590  Q
    |||| ||||||||||||||||||||| ||| |||||||||  ||||| ||| ||||||  || ||||||||    
T  36499014 cttataactagcgcatgttaactcacgctatgcaagttaacatgcataggggcattttcaacttttacttt 36498944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 21058507 - 21058568
Alignment:
Q  324 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 385  Q
    |||| ||||||||||||||||| | || | |||| | |||||||||||||| ||||||||||    
T  21058507 taattatcacttacttgatattttagaagaaattggctttgaatggcgcaaaaatggtgaaa 21058568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 131; Significance: 1e-67; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 315 - 497
Target Start/End: Complemental strand, 9384878 - 9384696
Alignment:
Q  315 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgtttt 414  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||    
T  9384878 gaagtagtataatagtcacttacttgatattgtggacgaaatttggtttgaatggcgcaagaatggtgaaattcggatttgagggtgaaaatttcgtttt 9384779  T
Q  415 ttgaaaagttgcaaaatggaggaatggaggttctgtgttgctggaaactgacttaaataacgtcgtgcatcttaagtcacgct 497  Q
    ||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| |||||| | |||| |||| |||||||    
T  9384778 ttgaaaagttgaaaaatggatgaatggaggttttgtgttgctggaaactgacttaagtaacgtagcgcatgttaactcacgct 9384696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 126 - 238
Target Start/End: Complemental strand, 9385068 - 9384956
Alignment:
Q  126 caactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatca 225  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  9385068 caactatgtaatcttacattttctaaaccctaaactaccacattgtaccctaaacaacatctaaacaacaattcctaagttaaatcatcactaacaatca 9384969  T
Q  226 taatctttaacat 238  Q
    |||||||||||||    
T  9384968 taatctttaacat 9384956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 14095047 - 14094929
Alignment:
Q  108 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 207  Q
    ||||||||| |||||||||||||| ||||||| ||| |||| ||||||||||||| |||||||||| ||||||||||||||  |||||||||||||||||    
T  14095047 tagtgtgcagttttcaaacaactaggtaatctaacaatttcaaaaccctaaactaccacattgtactctaaacaacatctaaacaacaattcctaagtta 14094948  T
Q  208 aatcatcactaacaatcat 226  Q
    | |||||||||||||||||    
T  14094947 actcatcactaacaatcat 14094929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 10529382 - 10529264
Alignment:
Q  108 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 207  Q
    ||||||||| |||| ||||||||| ||||||| ||| ||| |||||||||||||| |||||||||| ||||||||| ||||  |||||||||||||||||    
T  10529382 tagtgtgcaatttttaaacaactaggtaatctaacaatttgtaaaccctaaactaccacattgtactctaaacaacttctaaacaacaattcctaagtta 10529283  T
Q  208 aatcatcactaacaatcat 226  Q
    | |||||||||||||||||    
T  10529282 attcatcactaacaatcat 10529264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 400 - 497
Target Start/End: Original strand, 23558852 - 23558949
Alignment:
Q  400 tgaaaattttgttttttgaaaagttgcaaaatggaggaatggaggttctgtgttgctggaaactgacttaaataacgtcgtgcatcttaagtcacgct 497  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||| | ||| |||||||||||||    
T  23558852 tgaaaatttcgttttttgaaaagttgagaaatggaggaatggaggttctgtgttgctggaaactgacttaagtaacgtagcgcaacttaagtcacgct 23558949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 146 - 226
Target Start/End: Original strand, 37229972 - 37230052
Alignment:
Q  146 ttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatcat 226  Q
    ||||||||||||||||| |||||||||| ||||||||| ||||  |||||||||||||||||| |||||||||||||||||    
T  37229972 ttctaaaccctaaactaccacattgtactctaaacaacttctaaacaacaattcctaagttaattcatcactaacaatcat 37230052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 188
Target Start/End: Original strand, 37229896 - 37229976
Alignment:
Q  108 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatcta 188  Q
    ||||||||| |||||||||||||| ||||| | ||| ||| |||||||||||||| |||||||||| ||||||||| ||||    
T  37229896 tagtgtgcaattttcaaacaactaggtaatttaacaatttgtaaaccctaaactaccacattgtactctaaacaacttcta 37229976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 528 - 586
Target Start/End: Complemental strand, 9384716 - 9384658
Alignment:
Q  528 tagcgcatgttaactcacactacgcaagttaagttgcattgggacattttggacattta 586  Q
    |||||||||||||||||| ||||||| |||||||||| | |||||||||||||||||||    
T  9384716 tagcgcatgttaactcacgctacgcatgttaagttgcgtagggacattttggacattta 9384658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 315 - 438
Target Start/End: Complemental strand, 10529171 - 10529048
Alignment:
Q  315 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcg-agtttgagggtgaaaattttgttt 413  Q
    |||||||  |||| |||||||||||||||||||||  | |||| | ||| ||||||||||||||||||||| ||| | || ||||| |||||||| || |    
T  10529171 gaagtagggtaatcatcacttacttgatattgtgggagaaattggctttaaatggcgcaagaatggtgaaaatcgcacttggaggg-gaaaatttcgtgt 10529073  T
Q  414 tttgaaaagttgcaaaatggaggaa 438  Q
    || || |||||| ||||| ||||||    
T  10529072 ttggagaagttggaaaattgaggaa 10529048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 390
Target Start/End: Original strand, 37230141 - 37230216
Alignment:
Q  315 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcga 390  Q
    |||||||  |||| |||||||||||||||||||||  | |||| | |||||||| |||||||||||||||| ||||    
T  37230141 gaagtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatgacgcaagaatggtgaaaatcga 37230216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 520 - 590
Target Start/End: Complemental strand, 34276300 - 34276230
Alignment:
Q  520 cttacaactagcgcatgttaactcacactacgcaagttaagttgcattgggacattttggacatttacttt 590  Q
    |||| ||||||||||||||||||||| |||||||||||||  ||||| ||| ||||||  || ||||||||    
T  34276300 cttataactagcgcatgttaactcacgctacgcaagttaacatgcataggggcattttttacttttacttt 34276230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 324 - 385
Target Start/End: Complemental strand, 14094829 - 14094768
Alignment:
Q  324 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 385  Q
    |||| |||||||||||||||||||||  | |||| | ||||||||||||||||||| |||||    
T  14094829 taatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatgatgaaa 14094768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 22721346 - 22721282
Alignment:
Q  315 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatg 379  Q
    ||||||| ||||| |||||||||||||||||||||  | |||| | |||||||| ||||||||||    
T  22721346 gaagtaggataatcatcacttacttgatattgtgggagaaattggctttgaatgacgcaagaatg 22721282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 16995722 - 16995655
Alignment:
Q  157 aaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatc 224  Q
    |||||| | ||||| || ||||||||||||||  | ||||||||||| |||| |||||||||||||||    
T  16995722 aaactacctcattgcactctaaacaacatctaaactacaattcctaacttaattcatcactaacaatc 16995655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 385
Target Start/End: Complemental strand, 20520661 - 20520600
Alignment:
Q  324 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 385  Q
    |||| ||||||||||||||||| |||| | |||| | |||||||||| |||||||| |||||    
T  20520661 taatcatcacttacttgatattttggaagaaattggctttgaatggcacaagaatgatgaaa 20520600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 4e-61; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 86 - 245
Target Start/End: Original strand, 39688334 - 39688493
Alignment:
Q  86 ttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacat 185  Q
    |||| |||||||| |||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  39688334 ttgagacatttcaccgaacacgtagtgtgcatttttcaaacaactgtgtaatctgacattttctaaaccctaaactaccacattgtaccctaaacaacat 39688433  T
Q  186 ctacgcaacaattcctaagttaaatcatcactaacaatcataatctttaacatgcaagac 245  Q
    |||  |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  39688434 ctaaacaacaattcctaagttaaatcatcactagcaatcataatctttaacatccaagac 39688493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 315 - 436
Target Start/End: Original strand, 39688563 - 39688684
Alignment:
Q  315 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgtttt 414  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||| |||||||| ||| |||||    
T  39688563 gaagtagtataacaatcacttacttgatattgtggacgaaatttggtttgaatggcgcaagaatggtgaaattcggatttgggggtgaaattttcgtttt 39688662  T
Q  415 ttgaaaagttgcaaaatggagg 436  Q
    ||||||||||| ||||||||||    
T  39688663 ttgaaaagttgaaaaatggagg 39688684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 34440285 - 34440403
Alignment:
Q  108 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 207  Q
    ||||||||| |||||||||||||| ||||||| ||| ||| |||||||||||||| |||||||||| ||||||||| ||||  |||||||| ||||||||    
T  34440285 tagtgtgcaattttcaaacaactaggtaatctaacaatttgtaaaccctaaactaccacattgtactctaaacaacttctaaacaacaatttctaagtta 34440384  T
Q  208 aatcatcactaacaatcat 226  Q
    | |||||||||||||||||    
T  34440385 attcatcactaacaatcat 34440403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 149 - 226
Target Start/End: Complemental strand, 53630207 - 53630130
Alignment:
Q  149 taaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatcat 226  Q
    |||||||||||||| |||||||||| ||||||||||||||  ||||||||||||| |||| |||||||||||||||||    
T  53630207 taaaccctaaactaccacattgtactctaaacaacatctaaacaacaattcctaaattaattcatcactaacaatcat 53630130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 39688262 - 39688312
Alignment:
Q  11 atcatcaacattaacaaacatagctctaactaattacatccttaacaatcc 61  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39688262 atcatcaacattaacaaacatagctctaactaattacatcattaacaatcc 39688312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 2811434 - 2811523
Alignment:
Q  135 aatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatc 224  Q
    ||||| ||| ||| |||||||||||||| ||||||| |  ||||||||||||||  | ||||||||||| |||| |||||||||||||||    
T  2811434 aatctaacaatttttaaaccctaaactaccacattgcattctaaacaacatctaaactacaattcctaacttaattcatcactaacaatc 2811523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 485 - 590
Target Start/End: Original strand, 15041941 - 15042046
Alignment:
Q  485 cttaagtcacgctgcgtgacttaagacatgtttctcttacaactagcgcatgttaactcacactacgcaagttaagttgcattgggacattttggacatt 584  Q
    ||||| ||||||||||| |||||||  |||||   |||| ||||||||||||||||||||| |||||||||||||  ||| | ||| |||||| ||| ||    
T  15041941 cttaactcacgctgcgtaacttaagttatgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtaggggcattttcgacttt 15042040  T
Q  585 tacttt 590  Q
    ||||||    
T  15042041 tacttt 15042046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 485 - 590
Target Start/End: Original strand, 34086775 - 34086880
Alignment:
Q  485 cttaagtcacgctgcgtgacttaagacatgtttctcttacaactagcgcatgttaactcacactacgcaagttaagttgcattgggacattttggacatt 584  Q
    ||||| |||||||||||||||||||  | |||   |||| ||||||||||||||||||||| |||||||||||||  ||| | ||| |||||| ||| ||    
T  34086775 cttaactcacgctgcgtgacttaagttacgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtaggggcattttcgacttt 34086874  T
Q  585 tacttt 590  Q
    ||||||    
T  34086875 tacttt 34086880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 41071219 - 41071308
Alignment:
Q  135 aatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatc 224  Q
    ||||| ||| |||||||||||||||||| ||||||| || ||||| ||||||||  | ||||||| ||| |||| |||||||||||||||    
T  41071219 aatctaacaatttctaaaccctaaactaccacattgcactctaaataacatctaaactacaattcttaacttaattcatcactaacaatc 41071308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 485 - 590
Target Start/End: Complemental strand, 19866876 - 19866771
Alignment:
Q  485 cttaagtcacgctgcgtgacttaagacatgtttctcttacaactagcgcatgttaactcacactacgcaagttaagttgcattgggacattttggacatt 584  Q
    ||||| ||||| |||||||||||||  | |||   |||| ||||||||||||||||||||| |||||||||||||  ||| | ||| |||||| ||| ||    
T  19866876 cttaactcacgttgcgtgacttaagttacgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtaggggcatttttgacttt 19866777  T
Q  585 tacttt 590  Q
    ||||||    
T  19866776 tacttt 19866771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 447 - 559
Target Start/End: Original strand, 3860736 - 3860848
Alignment:
Q  447 ctgtgttgctggaaactgacttaaataacgtcgtgcatcttaagtcacgctgcgtgacttaagacatgtttctcttacaactagcgcatgttaactcaca 546  Q
    ||||||||||| |||||| ||||| |||||||| |   ||||| | ||| ||| ||||||||| ||||||   |||| ||||| || ||||||||||||     
T  3860736 ctgtgttgctgaaaactggcttaagtaacgtcgcgtgacttaacttacgttgcatgacttaagtcatgttcgccttataactaacgtatgttaactcacg 3860835  T
Q  547 ctacgcaagttaa 559  Q
    |||||||||||||    
T  3860836 ctacgcaagttaa 3860848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 7627235 - 7627146
Alignment:
Q  135 aatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatc 224  Q
    ||||| ||| ||||||||||||||| |  |||| || |  ||||||||||||||  | ||||||||||| |||| |||||||||||||||    
T  7627235 aatctaacaatttctaaaccctaaatttccacaatgcattctaaacaacatctaaactacaattcctaacttaattcatcactaacaatc 7627146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 498 - 590
Target Start/End: Original strand, 53827609 - 53827701
Alignment:
Q  498 gcgtgacttaagacatgtttctcttacaactagcgcatgttaactcacactacgcaagttaagttgcattgggacattttggacatttacttt 590  Q
    ||||||||||||   |||| |||||| ||||||||||  |||| |||| ||||||| |||||  ||| | ||| |||||||||||||||||||    
T  53827609 gcgtgacttaagttgtgttcctcttataactagcgcaacttaagtcacgctacgcatgttaacatgcgtaggggcattttggacatttacttt 53827701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 590
Target Start/End: Original strand, 44836413 - 44836518
Alignment:
Q  485 cttaagtcacgctgcgtgacttaagacatgtttctcttacaactagcgcatgttaactcacactacgcaagttaagttgcattgggacattttggacatt 584  Q
    |||||||||||| |||  ||||||| || |||||||||| ||||||||||  |||| |||| |||| || |||||  ||| | ||| || | ||||||||    
T  44836413 cttaagtcacgcagcgcaacttaagtcacgtttctcttataactagcgcaacttaagtcacgctacacatgttaacatgcgtaggggcaatatggacatt 44836512  T
Q  585 tacttt 590  Q
    ||||||    
T  44836513 tacttt 44836518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 3e-59; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 315 - 559
Target Start/End: Complemental strand, 6702683 - 6702439
Alignment:
Q  315 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgtttt 414  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||  |||| |||||||| ||| |||||    
T  6702683 gaagtagtataataatcacttacttgatattgtggacgaaatttggtttgaatggcacaagaatagtgaaattcggatttgggggtgaaattttcgtttt 6702584  T
Q  415 ttgaaaagttgcaaaatggaggaatggaggttctgtgttgctggaaactgacttaaataacgtcgtgcatcttaagtcacgctgcgtgacttaagacatg 514  Q
    ||||||||||| ||||||||||    | | | |||||||||||  ||||||||||| |||||| |  || ||||||||||||||||||||||||| ||      
T  6702583 ttgaaaagttgaaaaatggaggttctgtgctgctgtgttgctgataactgacttaagtaacgtagcacaacttaagtcacgctgcgtgacttaagtcaca 6702484  T
Q  515 tttctcttacaactagcgcatgttaactcacactacgcaagttaa 559  Q
     | | |||| |||||| |||||||||||||| |||||||||||||    
T  6702483 ctacccttataactagtgcatgttaactcacgctacgcaagttaa 6702439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 6702901 - 6702753
Alignment:
Q  86 ttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacat 185  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||         
T  6702901 ttgagacatttcatcgaacacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactaccacattgtaccctaaac----- 6702807  T
Q  186 ctacgcaacaattcctaagttaaatcatcactaacaatcataatctttaacatgcaagac 245  Q
          |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6702806 ------aacaattcctaagttaaatcatcactaacaatcataatctttaatatgcaagac 6702753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 2741024 - 2740906
Alignment:
Q  108 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 207  Q
    ||||||||| |||||||||||||| ||||||| ||| ||| |||||||||||||| |||||||||| ||||||||| ||||  |||||||||||||||||    
T  2741024 tagtgtgcaattttcaaacaactaggtaatctaacaatttgtaaaccctaaactaccacattgtactctaaacaacttctaaacaacaattcctaagtta 2740925  T
Q  208 aatcatcactaacaatcat 226  Q
    | |||||||||||||||||    
T  2740924 attcatcactaacaatcat 2740906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 13272179 - 13272061
Alignment:
Q  108 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 207  Q
    ||||||||| |||||||||||||| ||||||| ||| | | |||||||||||||| |||||||||| ||||||||| ||||  |||||||||||||||||    
T  13272179 tagtgtgcaattttcaaacaactaggtaatctaacaatatgtaaaccctaaactaccacattgtactctaaacaacttctaaacaacaattcctaagtta 13272080  T
Q  208 aatcatcactaacaatcat 226  Q
    | |||||||||||||||||    
T  13272079 attcatcactaacaatcat 13272061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 485 - 590
Target Start/End: Original strand, 30491730 - 30491835
Alignment:
Q  485 cttaagtcacgctgcgtgacttaagacatgtttctcttacaactagcgcatgttaactcacactacgcaagttaagttgcattgggacattttggacatt 584  Q
    ||||| |||| ||||||||||||||  | |||   |||| |||||||||||||||||||||||||||||||||||  ||| | |||||||||| ||| ||    
T  30491730 cttaactcactctgcgtgacttaagttaagttctccttataactagcgcatgttaactcacactacgcaagttaacatgcgtagggacattttcgacttt 30491829  T
Q  585 tacttt 590  Q
    ||||||    
T  30491830 tacttt 30491835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 485 - 590
Target Start/End: Original strand, 33144119 - 33144224
Alignment:
Q  485 cttaagtcacgctgcgtgacttaagacatgtttctcttacaactagcgcatgttaactcacactacgcaagttaagttgcattgggacattttggacatt 584  Q
    |||||||||||| ||||||||||||  |||||   |||| ||||||||||||||||||||| |||||||||||||  ||| | ||| ||||| || ||||    
T  33144119 cttaagtcacgcagcgtgacttaagttatgttctccttataactagcgcatgttaactcaccctacgcaagttaacatgcgtaggggcatttcggtcatt 33144218  T
Q  585 tacttt 590  Q
    ||||||    
T  33144219 tacttt 33144224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 315 - 385
Target Start/End: Complemental strand, 13271972 - 13271902
Alignment:
Q  315 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 385  Q
    |||||||  |||| |||||||||||||||||||||  | |||| | |||||||||||||||||||||||||    
T  13271972 gaagtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatggtgaaa 13271902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 6702953 - 6702916
Alignment:
Q  11 atcatcaacattaacaaacatagctctaactaattaca 48  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6702953 atcatcaacattaacaaacatagctctaactaattaca 6702916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 388
Target Start/End: Original strand, 22553127 - 22553199
Alignment:
Q  316 aagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattc 388  Q
    |||||| ||||| |||||||||||||||||||||  | |||| | |||||||||| |||||||| ||||||||    
T  22553127 aagtaggataatcatcacttacttgatattgtggtagaaattggctttgaatggcacaagaatgatgaaattc 22553199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 135 - 242
Target Start/End: Original strand, 24211179 - 24211286
Alignment:
Q  135 aatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatcataatcttta 234  Q
    ||||| ||| |||||||||  ||||||| ||||||| || ||||||||||||||  | ||||||||||| |||| |||||| |||| ||| |||   |||    
T  24211179 aatctaacaatttctaaactataaactaccacattgcactctaaacaacatctaaactacaattcctaacttaattcatcagtaactatcctaaaaatta 24211278  T
Q  235 acatgcaa 242  Q
    ||||||||    
T  24211279 acatgcaa 24211286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 520 - 559
Target Start/End: Complemental strand, 5504844 - 5504805
Alignment:
Q  520 cttacaactagcgcatgttaactcacactacgcaagttaa 559  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  5504844 cttataactagcgcatgttaactcacgctacgcaagttaa 5504805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 385
Target Start/End: Complemental strand, 2740815 - 2740745
Alignment:
Q  315 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 385  Q
    |||||||  |||| |||||||||||||||||||||  | |||| | |||||||||  ||||||||||||||    
T  2740815 gaagtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatggtacaagaatggtgaaa 2740745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 224
Target Start/End: Complemental strand, 8431298 - 8431209
Alignment:
Q  135 aatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatc 224  Q
    ||||| ||| ||||||||||| |||||||| ||||| | ||||||||||||  |  | |||||| |||| |||| |||| ||||||||||    
T  8431298 aatctaacaatttctaaacccaaaactatcgcattgcatcctaaacaacattcaaactacaatttctaacttaattcattactaacaatc 8431209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 134
Target Start/End: Complemental strand, 36933156 - 36933128
Alignment:
Q  106 cgtagtgtgcatttttcaaacaactatgt 134  Q
    |||||||||||||||||||||||||||||    
T  36933156 cgtagtgtgcatttttcaaacaactatgt 36933128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 9808 - 9948
Alignment:
Q  86 ttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacat 185  Q
    |||| |||||| | |||| |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||| ||||||    
T  9808 ttgagacattttaccgaacacgtagtgtgcaattttcaaacaactatgtaatctaacaatttctaaaccctaaactaccacattgtaccctaaccaacat 9907  T
Q  186 ctacgcaacaattcctaagttaaatcatcactaacaatcat 226  Q
    |||  |||||||||||||||||| || ||||||||||||||    
T  9908 ctaaacaacaattcctaagttaattcgtcactaacaatcat 9948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 41799563 - 41799702
Alignment:
Q  86 ttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacat 185  Q
    |||| |||||||| |||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  41799563 ttgagacatttcaccgaacacgtag-gtgcatttttcaaacaactatgtaatctaacattttctaaaccctaaactaccacattgtaccctaaacaacat 41799661  T
Q  186 ctacgcaacaattcctaagttaaatcatcactaacaatcat 226  Q
    |||  |||||||||||||||||  |  ||||||||||||||    
T  41799662 ctaaacaacaattcctaagttatttggtcactaacaatcat 41799702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 107 - 226
Target Start/End: Original strand, 8525106 - 8525225
Alignment:
Q  107 gtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtt 206  Q
    |||||| ||| ||||||||||||||||||||||  || |||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  8525106 gtagtgcgcaattttcaaacaactatgtaatctagcaatttctaaaccctaaactaccacattgtaccctaaacaacatctaaacaacaattcctaagtt 8525205  T
Q  207 aaatcatcactaacaatcat 226  Q
    || || |||||||| |||||    
T  8525206 aattcgtcactaaccatcat 8525225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 38455527 - 38455409
Alignment:
Q  108 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 207  Q
    ||||||||| |||||||||||||| ||||||| ||| ||| |||||||||||||| |||||||||| ||||||||| ||||  |||||||| ||||||||    
T  38455527 tagtgtgcaattttcaaacaactaggtaatctaacaatttgtaaaccctaaactaccacattgtactctaaacaacttctaaacaacaatttctaagtta 38455428  T
Q  208 aatcatcactaacaatcat 226  Q
    | |||||||||||||||||    
T  38455427 attcatcactaacaatcat 38455409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 13553231 - 13553111
Alignment:
Q  108 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 207  Q
    |||||| || |||||||||||||| ||||||| ||| ||| |||||  ||||||| |||||||||| ||||| ||||||||  |||||||||||||||||    
T  13553231 tagtgtacaattttcaaacaactaggtaatctaacaatttttaaactttaaactaccacattgtactctaaataacatctaaacaacaattcctaagtta 13553132  T
Q  208 aatcatcactaacaatcataa 228  Q
    | || ||||||||||||||||    
T  13553131 attcgtcactaacaatcataa 13553111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 112 - 224
Target Start/End: Original strand, 21065904 - 21066016
Alignment:
Q  112 gtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatc 211  Q
    ||||| |||||| ||||||| | ||||| ||| |||||||||||||||||| |||||||||| ||||||||||||||  ||||| ||||||| |||| ||    
T  21065904 gtgcaattttcatacaactaagaaatctaacaatttctaaaccctaaactaccacattgtactctaaacaacatctaaacaacagttcctaacttaattc 21066003  T
Q  212 atcactaacaatc 224  Q
    | |||||||||||    
T  21066004 accactaacaatc 21066016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 325 - 509
Target Start/End: Original strand, 41799801 - 41799985
Alignment:
Q  325 aataatcacttacttgatattgtggacggaatttgg-tttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgttttttgaaaagt 423  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| || |  |||| ||||||||||||  |||||  ||| ||    
T  41799801 aataatcacttacttgatattgtggac-gaatttggctttgaatggcgcaagaatgatgaattttggatttgggggtgaaaatttcatttttgaaaatgt 41799899  T
Q  424 tgcaaaatggaggaatggaggttctgtgttgctggaaactgacttaaataacgtcgtgcatcttaagtcacgctgcgtgacttaag 509  Q
    ||  |||||  ||||  |   | ||||||||||  |||||||||||| |||||||| |   ||||| |||||||||||||||||||    
T  41799900 tgggaaatgagggaactgtactgctgtgttgctaaaaactgacttaagtaacgtcgcgtgacttaactcacgctgcgtgacttaag 41799985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 316 - 404
Target Start/End: Complemental strand, 13553024 - 13552936
Alignment:
Q  316 aagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaa 404  Q
    |||||| ||||| |||||||||||||||||||||||| |||| | ||| ||||||||||||||| |||||||||  |||| ||||||||    
T  13553024 aagtaggataatcatcacttacttgatattgtggacgaaattggctttaaatggcgcaagaatgatgaaattcggatttgggggtgaaa 13552936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 447 - 559
Target Start/End: Original strand, 44552599 - 44552711
Alignment:
Q  447 ctgtgttgctggaaactgacttaaataacgtcgtgcatcttaagtcacgctgcgtgacttaagacatgtttctcttacaactagcgcatgttaactcaca 546  Q
    ||||||||||| |||||| ||||| |||||||| | | ||||| |||| |||||||||||||| || |||   | || |||||||||||||||||||||     
T  44552599 ctgtgttgctgaaaactggcttaagtaacgtcgcgtaacttaactcacactgcgtgacttaagtcacgttcaccctataactagcgcatgttaactcacg 44552698  T
Q  547 ctacgcaagttaa 559  Q
     ||||||||||||    
T  44552699 ttacgcaagttaa 44552711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 432
Target Start/End: Original strand, 8525322 - 8525431
Alignment:
Q  323 ataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgttttttgaaaag 422  Q
    ||||| ||||||||| |||| ||||||||| |||||| |||||||||||||||| || |||||||||| |||  ||||| || | | || ||| ||||||    
T  8525322 ataatcatcacttacatgatgttgtggacgaaatttgctttgaatggcgcaagattgatgaaattcgaattttggggtgcaattctcgtgtttggaaaag 8525421  T
Q  423 ttgcaaaatg 432  Q
    ||| ||||||    
T  8525422 ttggaaaatg 8525431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 315 - 389
Target Start/End: Original strand, 8231734 - 8231807
Alignment:
Q  315 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcg 389  Q
    |||||||| |||||||||||||||||||| |||||  | |||| | ||||||||||||||||||| |||||||||    
T  8231734 gaagtagtttaataatcacttacttgata-tgtgggagaaattggctttgaatggcgcaagaatgatgaaattcg 8231807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 315 - 385
Target Start/End: Complemental strand, 38455319 - 38455249
Alignment:
Q  315 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 385  Q
    |||||||  |||| |||||||||||||||||||||  | |||| | |||||||||||||||||||||||||    
T  38455319 gaagtagggtaatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatggtgaaa 38455249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 224
Target Start/End: Complemental strand, 12625408 - 12625296
Alignment:
Q  112 gtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatc 211  Q
    ||||| |||||||||||||| | ||||| ||| |||||||| | ||||||| |||||  ||| ||||| ||||||||  | ||||||  ||| |||| ||    
T  12625408 gtgcaattttcaaacaactaagaaatctaacaatttctaaatcataaactaccacatattactctaaataacatctaaactacaatttataacttaattc 12625309  T
Q  212 atcactaacaatc 224  Q
    |||||||||||||    
T  12625308 atcactaacaatc 12625296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 16728672 - 16728740
Alignment:
Q  155 ctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaat 223  Q
    |||||||| ||||||| || ||||||||||||||  | ||||||||||| |||| ||||||||||||||    
T  16728672 ctaaactaccacattggactctaaacaacatctaaactacaattcctaacttaattcatcactaacaat 16728740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 155 - 223
Target Start/End: Original strand, 17705744 - 17705812
Alignment:
Q  155 ctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaat 223  Q
    |||||||| ||||||| || ||||||||||||||  | ||||||||||| |||| ||||||||||||||    
T  17705744 ctaaactaccacattggactctaaacaacatctaaactacaattcctaacttaattcatcactaacaat 17705812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 11 - 50
Target Start/End: Original strand, 41799491 - 41799530
Alignment:
Q  11 atcatcaacattaacaaacatagctctaactaattacatc 50  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  41799491 atcatcaacattaacaaacatagctctatctaattacatc 41799530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 17715723 - 17715797
Alignment:
Q  149 taaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaat 223  Q
    |||| ||||||||| ||||||| || ||||||||||| ||  | ||||||||||| |||| ||||||||||||||    
T  17715723 taaatcctaaactaccacattggactctaaacaacatataaactacaattcctaacttaattcatcactaacaat 17715797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 498 - 559
Target Start/End: Original strand, 26604121 - 26604182
Alignment:
Q  498 gcgtgacttaagacatgtttctcttacaactagcgcatgttaactcacactacgcaagttaa 559  Q
    ||||||||||||  | ||||||| || ||||||||||||||||||||| ||||| |||||||    
T  26604121 gcgtgacttaagttacgtttctcgtataactagcgcatgttaactcacgctacgtaagttaa 26604182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 498 - 590
Target Start/End: Complemental strand, 30359834 - 30359741
Alignment:
Q  498 gcgtgacttaagacatgtttctcttacaactagcgcatgtt-aactcacactacgcaagttaagttgcattgggacattttggacatttacttt 590  Q
    ||||||||||||  | |||||||||| |||||||||||||| ||| ||| ||||| |||||||   |||| ||||| |||||||| ||||||||    
T  30359834 gcgtgacttaagttacgtttctcttataactagcgcatgttaaacccacgctacgtaagttaacaagcatagggacgttttggacttttacttt 30359741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 13553321 - 13553277
Alignment:
Q  17 aacattaacaaacatagctctaactaattacatccttaacaatcc 61  Q
    ||||||||||||||||  |||||||||||||||| ||||||||||    
T  13553321 aacattaacaaacatatttctaactaattacatcattaacaatcc 13553277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 16728631 - 16728674
Alignment:
Q  145 tttctaaaccctaaactatcacattgtaccctaaacaacatcta 188  Q
    |||||||||||||||||| ||||||| || ||||||||||||||    
T  16728631 tttctaaaccctaaactaccacattggactctaaacaacatcta 16728674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 188
Target Start/End: Original strand, 17705703 - 17705746
Alignment:
Q  145 tttctaaaccctaaactatcacattgtaccctaaacaacatcta 188  Q
    |||||||||||||||||| ||||||| || ||||||||||||||    
T  17705703 tttctaaaccctaaactaccacattggactctaaacaacatcta 17705746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 463 - 590
Target Start/End: Original strand, 20379581 - 20379708
Alignment:
Q  463 tgacttaaataacgtcgtgcatcttaagtcacgctgcgtgacttaagacatgtttctcttacaactagcgcatgttaactcacactacgcaagttaagtt 562  Q
    |||||||| | |||| | ||| ||||||||||  ||||||||||||   | |||||||||| |||||| |||  |||| |||| ||| |||  |||||||    
T  20379581 tgacttaagtcacgtggcgcaacttaagtcacattgcgtgacttaacttacgtttctcttataactagtgcaacttaagtcacgctatgcatattaagtt 20379680  T
Q  563 gcattgggacattttggacatttacttt 590  Q
    || | ||| |||||||||| ||||||||    
T  20379681 gcgtaggggcattttggacttttacttt 20379708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 29033579 - 29033520
Alignment:
Q  164 cacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaat 223  Q
    |||||||||| ||||| ||| | ||  |||||||||||||||||| ||||||||||||||    
T  29033579 cacattgtactctaaataacttataaacaacaattcctaagttaattcatcactaacaat 29033520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 245
Target Start/End: Original strand, 8229975 - 8230027
Alignment:
Q  193 acaattcctaagttaaatcatcactaacaatcataatctttaacatgcaagac 245  Q
    ||||||||||| |||| |||||||||||||||||||    |||||||||||||    
T  8229975 acaattcctaacttaattcatcactaacaatcataaaaactaacatgcaagac 8230027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 558
Target Start/End: Original strand, 38791984 - 38792056
Alignment:
Q  486 ttaagtcacgctgcgtgacttaagacatgtttctcttacaactagcgcatgttaactcacactacgcaagtta 558  Q
    |||||||| |||||||||||||||  |  ||||||||| ||||||||||  |||| |||| ||||||| ||||    
T  38791984 ttaagtcatgctgcgtgacttaagttacatttctcttataactagcgcaacttaagtcacgctacgcatgtta 38792056  T

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Target: scaffold0408 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 108 - 226
Target Start/End: Complemental strand, 5389 - 5271
Alignment:
Q  108 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 207  Q
    ||||||||| |||||||||||||| ||||||| ||| |||| ||||||||||||| |||||||||| ||||||||||||||  |||||||||||||||||    
T  5389 tagtgtgcagttttcaaacaactaggtaatctaacaatttcaaaaccctaaactaccacattgtactctaaacaacatctaaacaacaattcctaagtta 5290  T
Q  208 aatcatcactaacaatcat 226  Q
    | |||||||||||||||||    
T  5289 actcatcactaacaatcat 5271  T

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Target: scaffold1212 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 1374 - 1492
Alignment:
Q  108 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 207  Q
    ||||||| | |||||||| ||||| ||||||| ||| ||| |||||||||||||| |||||||||| ||||||||||||||  ||||||||| |||||||    
T  1374 tagtgtggaattttcaaaaaactaggtaatctaacaatttgtaaaccctaaactaccacattgtactctaaacaacatctaaacaacaattcataagtta 1473  T
Q  208 aatcatcactaacaatcat 226  Q
    | |||||||||||||||||    
T  1474 attcatcactaacaatcat 1492  T

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Target: scaffold1212; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 1590 - 1651
Alignment:
Q  324 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 385  Q
    |||| ||||||||||||||||| |||| | ||||   ||||||||||||||||||| |||||    
T  1590 taatcatcacttacttgatattttggaagaaattgactttgaatggcgcaagaatgatgaaa 1651  T

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Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 111 - 226
Target Start/End: Complemental strand, 35007209 - 35007094
Alignment:
Q  111 tgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaat 210  Q
    |||||| |||||||||||||| ||||||| ||  ||| ||||||||||| || |||||||||| ||||||||| ||||  |||||||| ||||||||| |    
T  35007209 tgtgcaattttcaaacaactaggtaatctaactgtttgtaaaccctaaattaccacattgtactctaaacaacttctaaacaacaatttctaagttaatt 35007110  T
Q  211 catcactaacaatcat 226  Q
    ||||||||||||||||    
T  35007109 catcactaacaatcat 35007094  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 86 - 245
Target Start/End: Complemental strand, 24122630 - 24122472
Alignment:
Q  86 ttgaaacatttcatcgaatacgtagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacat 185  Q
    |||| |||||| ||| || || ||| ||||| |||||||||||||| | ||||| ||| |||||||||||||||||| ||||||  || |||||||||||    
T  24122630 ttgagacattttatcaaacacatagagtgcaattttcaaacaactaag-aatctaacaatttctaaaccctaaactaccacatttcactctaaacaacat 24122532  T
Q  186 ctacgcaacaattcctaagttaaatcatcactaacaatcataatctttaacatgcaagac 245  Q
     ||    |||||||||||||||||||||||||||||||| |||    |||||||||||||    
T  24122531 ttaaagtacaattcctaagttaaatcatcactaacaatcctaaaaactaacatgcaagac 24122472  T

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Target: chr6; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 394 - 491
Target Start/End: Complemental strand, 25400997 - 25400900
Alignment:
Q  394 tgagggtgaaaattttgttttttgaaaagttgcaaaatggaggaatggaggttctgtgttgctggaaactgacttaaataacgtcgtgcatcttaagt 491  Q
    ||||||||||||||  |||||||||||||||| |||||||| ||||| ||||| |||||||||||| |||||||||| ||||||   |||||||||||    
T  25400997 tgagggtgaaaattacgttttttgaaaagttgaaaaatggatgaatgtaggttttgtgttgctggagactgacttaagtaacgtaacgcatcttaagt 25400900  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 317 - 405
Target Start/End: Complemental strand, 24122399 - 24122311
Alignment:
Q  317 agtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaa 405  Q
    ||||| ||||| ||||||||||||||||||||| || |||| | |||||||||||||||||| ||||||||||| |||| |||||||||    
T  24122399 agtagaataatcatcacttacttgatattgtggtcgaaattagctttgaatggcgcaagaatcgtgaaattcgaatttgggggtgaaaa 24122311  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 6287900 - 6288007
Alignment:
Q  108 tagtgtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagtta 207  Q
    ||||||||| ||||||||||| || ||||||| ||| ||| |||||||||||||| |||||||||| |||||||||           |||||||||||||    
T  6287900 tagtgtgcaattttcaaacaaataggtaatctaacaatttgtaaaccctaaactaccacattgtactctaaacaac-----------aattcctaagtta 6287988  T
Q  208 aatcatcactaacaatcat 226  Q
    | |||||||||||||||||    
T  6287989 attcatcactaacaatcat 6288007  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 135 - 222
Target Start/End: Complemental strand, 31020902 - 31020815
Alignment:
Q  135 aatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaa 222  Q
    ||||| ||| |||||||||||||||||| |||| || || ||||||||||||||  | ||||||||||| |||| |||||||||||||    
T  31020902 aatctaacaatttctaaaccctaaactaccacaatgcactctaaacaacatctaaactacaattcctaacttaattcatcactaacaa 31020815  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 18790840 - 18790954
Alignment:
Q  112 gtgcatttttcaaacaactatgtaatcttacattttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatc 211  Q
    ||||| |||||||||||||| | ||||| ||| |||||||||| ||||||| ||||||  || ||||||||||||||     |||||||||| |||| ||    
T  18790840 gtgcaattttcaaacaactaagaaatctaacaatttctaaaccataaactagcacatttcactctaaacaacatctaaaatgcaattcctaacttaattc 18790939  T
Q  212 atcactaacaatcat 226  Q
    |||  ||||||||||    
T  18790940 atctttaacaatcat 18790954  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 145 - 224
Target Start/End: Complemental strand, 19222736 - 19222657
Alignment:
Q  145 tttctaaaccctaaactatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatc 224  Q
    |||||||||||||||||| |||||   || ||||||||||||||  | | ||||||||| |||| |||||||||||||||    
T  19222736 tttctaaaccctaaactaccacatatcactctaaacaacatctaaactataattcctaacttaattcatcactaacaatc 19222657  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 395
Target Start/End: Complemental strand, 19222566 - 19222486
Alignment:
Q  315 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttg 395  Q
    ||||||| ||||| || ||||| || |||||||||  | |||| | ||||||||||||||||||| |||||||||| ||||    
T  19222566 gaagtaggataatcattacttattttatattgtgggtgaaattggctttgaatggcgcaagaatgatgaaattcgaatttg 19222486  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 324 - 382
Target Start/End: Original strand, 6288106 - 6288164
Alignment:
Q  324 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtg 382  Q
    |||| |||||||||||||||||||||  | |||| | ||||||||| ||||||||||||    
T  6288106 taatcatcacttacttgatattgtgggagaaattggctttgaatggtgcaagaatggtg 6288164  T

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Target: scaffold0046 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 430
Target Start/End: Original strand, 75127 - 75228
Alignment:
Q  329 atcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaattcgagtttgagggtgaaaattttgttttttgaaaagttgcaa 428  Q
    |||||||||||||||||||||  | |||| | ||||| ||||||||||||||||||| |||   |||  || |||||||||||||||||| |||||| ||    
T  75127 atcacttacttgatattgtgggagaaattggctttgattggcgcaagaatggtgaaaatcgcacttggaggagaaaattttgttttttgagaagttggaa 75226  T
Q  429 aa 430  Q
    ||    
T  75227 aa 75228  T

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Target: scaffold0010 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 315 - 385
Target Start/End: Original strand, 34555 - 34625
Alignment:
Q  315 gaagtagtataataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 385  Q
    ||||||| ||||| |||||||||||||||||||||  | |||| | || ||||||||||||||||||||||    
T  34555 gaagtaggataatcatcacttacttgatattgtgggagaaattggcttggaatggcgcaagaatggtgaaa 34625  T

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Target: scaffold0010; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 34384 - 34468
Alignment:
Q  145 tttctaaaccctaaa-ctatcacattgtaccctaaacaacatctacgcaacaattcctaagttaaatcatcactaacaatcataa 228  Q
    |||| |||||||||| ||| ||||||  || ||||||||||||||    || |||||||| |||| |||||||||||||||||||    
T  34384 tttcaaaaccctaaaactaccacatttcactctaaacaacatctaatatactattcctaacttaattcatcactaacaatcataa 34468  T

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Target: scaffold1763 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 485 - 545
Target Start/End: Original strand, 301 - 361
Alignment:
Q  485 cttaagtcacgctgcgtgacttaagacatgtttctcttacaactagcgcatgttaactcac 545  Q
    |||||||||||||| ||||||||||  | |||||||||| |||||| ||||||||||||||    
T  301 cttaagtcacgctgtgtgacttaagttacgtttctcttataactagtgcatgttaactcac 361  T

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Target: scaffold0695 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0695
Description:

Target: scaffold0695; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 324 - 385
Target Start/End: Original strand, 1620 - 1681
Alignment:
Q  324 taataatcacttacttgatattgtggacggaatttggtttgaatggcgcaagaatggtgaaa 385  Q
    |||| |||||||||||||||||||||  | |||| | ||||||||||||||||||| |||||    
T  1620 taatcatcacttacttgatattgtgggagaaattggctttgaatggcgcaagaatgatgaaa 1681  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 525 - 559
Target Start/End: Original strand, 24340 - 24374
Alignment:
Q  525 aactagcgcatgttaactcacactacgcaagttaa 559  Q
    ||||||||||||||||||||| |||||||||||||    
T  24340 aactagcgcatgttaactcacgctacgcaagttaa 24374  T

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