View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8138_high_3 (Length: 514)
Name: NF8138_high_3
Description: NF8138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8138_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 479; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 1458430 - 1458928
Alignment:
| Q |
1 |
aaggtctccctctagtaccaatttcgttgggctagtccataccgagtcttcttgctctggctttaaatgatcccctcgcgagtggatggtagggttctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1458430 |
aaggtctccctctagtaccaatttcgttgggctagtccataccgagtcttcttgctctggctttaaatgatcccctcgcgagtggatggtagggttctct |
1458529 |
T |
|
| Q |
101 |
aaacagattacaaatgaattgcaatagagtgattcaaagtgatcttgaatcaactataaattgttagccataaactaagtaacaataatgaagttacagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1458530 |
aaacagattacaaatgaattgcaatagagtgattcaaagtgatcttgaatcaactataaattgttagccataaactaagtaacaataatgaagttacagt |
1458629 |
T |
|
| Q |
201 |
tacagtttgttgactggatcaatatgtcactttaacagcagctactaactgatgagtaattgcagccattgacaggattaggagtgtctaaagttgtaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1458630 |
tacagtttgttgactggatcaatatgtcactttaacggcagctactaactgatgagtaattgcagccattgacaggattaggagtgtctaaagttgtaga |
1458729 |
T |
|
| Q |
301 |
atctggacatccaaattataagaaagatgatttagtttggggaatgactaaatgggaagagtatagtttggtccctgcagctcaaatacttttcaaaatt |
400 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1458730 |
atctggacatccagattataagaaagatgatttagtttggggaatgactaaatgggaagagtatagtttggtccctgcagctcaaatacttttcaaaatt |
1458829 |
T |
|
| Q |
401 |
gagcatgcagatgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaatttgtatcgatgttagttgcgtagttttctgccat |
499 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
1458830 |
gagcatacagatgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaatttgtatcaatgttagtcgcgtagttttctgccat |
1458928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 2428137 - 2428635
Alignment:
| Q |
1 |
aaggtctccctctagtaccaatttcgttgggctagtccataccgagtcttcttgctctggctttaaatgatcccctcgcgagtggatggtagggttctct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2428137 |
aaggtctccctctagtaccaatttcgttgggctagtccataccgagtcttcttgctctggctttaaatgatcccctcgcgagtggatggtagggttctct |
2428236 |
T |
|
| Q |
101 |
aaacagattacaaatgaattgcaatagagtgattcaaagtgatcttgaatcaactataaattgttagccataaactaagtaacaataatgaagttacagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2428237 |
aaacagattacaaatgaattgcaatagagtgattcaaagtgatcttgaatcaactataaattgttagccataaactaagtaacaataatgaagttacagt |
2428336 |
T |
|
| Q |
201 |
tacagtttgttgactggatcaatatgtcactttaacagcagctactaactgatgagtaattgcagccattgacaggattaggagtgtctaaagttgtaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2428337 |
tacagtttgttgactggatcaatatgtcactttaacggcagctactaactgatgagtaattgcagccattgacaggattaggagtgtctaaagttgtaga |
2428436 |
T |
|
| Q |
301 |
atctggacatccaaattataagaaagatgatttagtttggggaatgactaaatgggaagagtatagtttggtccctgcagctcaaatacttttcaaaatt |
400 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2428437 |
atctggacatccagattataagaaagatgatttagtttggggtattactaactgggaagagtatagtttggtccctgcagctcaaatacttttcaaaatt |
2428536 |
T |
|
| Q |
401 |
gagcatgcagatgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaatttgtatcgatgttagttgcgtagttttctgccat |
499 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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|
| T |
2428537 |
gagcatacagatgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaatttgtatcaatgttagtcgcgtagttttctgccat |
2428635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 243 - 499
Target Start/End: Original strand, 2431358 - 2431613
Alignment:
| Q |
243 |
tactaactgatgagtaattgcagccattgacaggattaggagtgtctaaagttgtagaatctggacatccaaattataagaaagatgatttagtttgggg |
342 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
2431358 |
tactaactgacgagtaattgcagccactgacaggttttggagtgtctaaagttgtagaatctggacatccagattataagaaagatgatttagtttgggg |
2431457 |
T |
|
| Q |
343 |
aatgactaaatgggaagagtatagtttggtccctgcagctcaaatacttttcaaaattgagcatgcagatgtcccactttcctactatactggaattctc |
442 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||| || || || | | |||||||||||| ||||||||||||||||| || | || ||||| |
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|
| T |
2431458 |
tattactaactgggaagagtatagtttggtccctacaactggaa---tgtacaaaattgagcacaatgatgtcccactttcctattacatcgggattctt |
2431554 |
T |
|
| Q |
443 |
gg--tatgtattcaacaatttcaatttgtatcgatgttagttgcgtagttttctgccat |
499 |
Q |
| |
|
|| |||| ||||||||||||||||| ||| ||| ||| | |||||||||||| |||| |
|
|
| T |
2431555 |
ggtatatgcgttcaacaatttcaatttatattgatattaatcgcgtagttttcttccat |
2431613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 240 - 446
Target Start/End: Original strand, 2434740 - 2434943
Alignment:
| Q |
240 |
agctactaactgatgagtaattgcagccattgacaggattaggagtgtctaaagttgtagaatctggacatccaaattataagaaagatgatttagtttg |
339 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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|
| T |
2434740 |
agctactaactgacgagtaattgcagccactgacaggttttggagtgtctaaagttgtagaatctggacatccagattataagaaagatgattcagtttg |
2434839 |
T |
|
| Q |
340 |
gggaatgactaaatgggaagagtatagtttggtccctgcagctcaaatacttttcaaaattgagcatgcagatgtcccactttcctactatactggaatt |
439 |
Q |
| |
|
| | | |||||||||||||||||||||||||| ||| || || || |||||||||||||||| ||||||||||||||||| ||||| |||||| |
|
|
| T |
2434840 |
gagtcttactaaatgggaagagtatagtttggttcctacaactggaa---ttttcaaaattgagcacaatgatgtcccactttcctattataccggaatt |
2434936 |
T |
|
| Q |
440 |
ctcggta |
446 |
Q |
| |
|
|| |||| |
|
|
| T |
2434937 |
cttggta |
2434943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 284 - 467
Target Start/End: Complemental strand, 2498204 - 2498021
Alignment:
| Q |
284 |
gtgtctaaagttgtagaatctggacatccaaattataagaaagatgatttagtttggggaatgactaaatgggaagagtatagtttggtccctgcagctc |
383 |
Q |
| |
|
||||||||||| | ||||| |||||||| |||||||| ||| |||||||||||||||| | ||||||||||||||| || ||||||||| || ||| |
|
|
| T |
2498204 |
gtgtctaaagtccttgaatcaggacatcctgattataaggaaggtgatttagtttggggattctgtaaatgggaagagtacagcttggtcccttcatctc |
2498105 |
T |
|
| Q |
384 |
aaatacttttcaaaattgagcatgcagatgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaattt |
467 |
Q |
| |
|
|||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
2498104 |
aaatacttttcaaaattgagcacactgatgtcccactttcctactatactggaatactcggtatgttttcaacaatttcaattt |
2498021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 284 - 467
Target Start/End: Complemental strand, 2518014 - 2517831
Alignment:
| Q |
284 |
gtgtctaaagttgtagaatctggacatccaaattataagaaagatgatttagtttggggaatgactaaatgggaagagtatagtttggtccctgcagctc |
383 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||||||| ||| ||||||||| ||||| | ||||| ||||||||||| || ||| |||||||||||| |
|
|
| T |
2518014 |
gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatttagtgtgggggtttactaattgggaagagtacagcttgatccctgcagctc |
2517915 |
T |
|
| Q |
384 |
aaatacttttcaaaattgagcatgcagatgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaattt |
467 |
Q |
| |
|
||||||||||||||||||| || ||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2517914 |
aaatacttttcaaaattgaacacacagatgttcctctttcgtactatactggaattcttggtatgtattcaacaatttcaattt |
2517831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 284 - 451
Target Start/End: Complemental strand, 2507137 - 2506970
Alignment:
| Q |
284 |
gtgtctaaagttgtagaatctggacatccaaattataagaaagatgatttagtttggggaatgactaaatgggaagagtatagtttggtccctgcagctc |
383 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||||||| ||| |||| |||| ||||| || ||||| ||||||||||| || ||| ||||||| || | |
|
|
| T |
2507137 |
gtgtctaaagttgtggaatctggacacaaagattataaggaaggtgatatagtgtgggggataactaattgggaagagtacagcttgatccctgcggcac |
2507038 |
T |
|
| Q |
384 |
aaatacttttcaaaattgagcatgcagatgtcccactttcctactatactggaattctcggtatgtat |
451 |
Q |
| |
|
|||||| |||||||||||||||| | ||||| || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
2507037 |
aaatacatttcaaaattgagcatactgatgttcctctttcctactatactggaattctaggtatgtat |
2506970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 284 - 467
Target Start/End: Complemental strand, 2513797 - 2513614
Alignment:
| Q |
284 |
gtgtctaaagttgtagaatctggacatccaaattataagaaagatgatttagtttggggaatgactaaatgggaagagtatagtttggtccctgcagctc |
383 |
Q |
| |
|
|||||||||||| ||||||||||||| | ||||||| ||| |||| | || ||||| || ||||| ||||||||||| || ||| |||||||||| | |
|
|
| T |
2513797 |
gtgtctaaagttctagaatctggacacaaagattataaagaaggtgatatcgtgtgggggataactaattgggaagagtacagcttgatccctgcagcac |
2513698 |
T |
|
| Q |
384 |
aaatacttttcaaaattgagcatgcagatgtcccactttcctactatactggaattctcggtatgtattcaacaatttcaattt |
467 |
Q |
| |
|
|||||| ||| ||||||||||| | ||||| || |||||||||||||| |||||||| ||||||| || ||||||||||||| |
|
|
| T |
2513697 |
aaatacattttaaaattgagcacactgatgttcctctttcctactatacaggaattcttggtatgtgatccacaatttcaattt |
2513614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 405
Target Start/End: Complemental strand, 50703557 - 50703468
Alignment:
| Q |
315 |
attataagaaagatgatttagtttggggaatgactaaatgggaagagtatagtttggtccctgcagctcaaatacttttcaaaattgagca |
405 |
Q |
| |
|
|||||||| ||| ||||| |||||||||| | ||||||||||||||| || ||||| ||| | ||||||||||||||||||||||||| |
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|
| T |
50703557 |
attataaggaaggtgattaagtttggggattctgtaaatgggaagagtacagcttggtacctt-atctcaaatacttttcaaaattgagca |
50703468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 1191580 - 1191637
Alignment:
| Q |
7 |
tccctctagtaccaatttcgttgggct-agtccataccgagtcttcttgctctggctttaaa |
67 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||| |||| |||||||||||||||| |
|
|
| T |
1191580 |
tccctctagtaccaatttcggtgggctaagtccatacagagt----ttgctctggctttaaa |
1191637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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