View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8138_high_5 (Length: 371)
Name: NF8138_high_5
Description: NF8138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8138_high_5 |
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| [»] scaffold0458 (2 HSPs) |
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Alignment Details
Target: scaffold0458 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 9 - 354
Target Start/End: Complemental strand, 3989 - 3644
Alignment:
| Q |
9 |
agcacagatccattgcctatctactttcgatcttgctctttgtatccttgcatgtagcaaatggtgttcctccagaaaccatttgtgggtctaccgtaaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3989 |
agcacagatccattgcctatctactttcgatcttgctctttgtatccttgcatgtagcaaatggtattcctccagaaaccatttgtgggtctaccgtaaa |
3890 |
T |
|
| Q |
109 |
ccctacttattgtagaaacatacttgccaatcaaaatggaaacatttatgactacggtcgaatttcaattcgaaattccttatcgcaatcccgtaagttc |
208 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3889 |
ccctacttattgtaaaaacatacttgccaatcaaaatggaaacatttatgactacggtcgaatttcaattcgaaaatccttatcgcaatcccgtaagttc |
3790 |
T |
|
| Q |
209 |
atgaattcaatagactcacaccttcaaggtggttcgtctttgtctcaatccacaattcgtgctcttgaagattgtcgattccttgctgaattgagttttg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3789 |
atgaattcaatagactcacaccttcaaggtggttcgtctttgtctcaatccacaattcgtgctcttgaagattgtcgattccttgctgaattgagttttg |
3690 |
T |
|
| Q |
309 |
aatacttatcaaacacctatacaacaacaaatcaatctagtaatgt |
354 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3689 |
aatacttatcaaacacctatacaacaacaaatcaatctagtaatgt |
3644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 13307 - 13164
Alignment:
| Q |
9 |
agcacagatccattgcctatctactttcgatcttgctctttgtatccttgcatgtagcaaatggtgttcctccagaaaccatttgtgggtctaccgtaaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13307 |
agcacagatccattgcctatctactttcgatcttgctctttgtatccttgcatgtagcaaatggtattcctccagaaaccatttgtgggtctaccgtaaa |
13208 |
T |
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| Q |
109 |
ccctacttattgtagaaacatacttgccaatcaaaatggaaaca |
152 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13207 |
ccctacttattgtaaaaacatacttgccaatcaaaatggaaaca |
13164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 9 - 354
Target Start/End: Original strand, 39470504 - 39470849
Alignment:
| Q |
9 |
agcacagatccattgcctatctactttcgatcttgctctttgtatccttgcatgtagcaaatggtgttcctccagaaaccatttgtgggtctaccgtaaa |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39470504 |
agcacagatccattgcctatctactttcgatcttgctctttgtatccttgcatgtagcaaatggtattcctccagaaaccatttgtgggtctaccgtaaa |
39470603 |
T |
|
| Q |
109 |
ccctacttattgtagaaacatacttgccaatcaaaatggaaacatttatgactacggtcgaatttcaattcgaaattccttatcgcaatcccgtaagttc |
208 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39470604 |
ccctacttattgtaaaaacatacttgccaatcaaaatggaaacatttatgactacggtcgaatttcaattcgaaaatccttatcgcaatcccgtaagttc |
39470703 |
T |
|
| Q |
209 |
atgaattcaatagactcacaccttcaaggtggttcgtctttgtctcaatccacaattcgtgctcttgaagattgtcgattccttgctgaattgagttttg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39470704 |
atgaattcaatagactcacaccttcaaggtggttcgtctttgtctcaatccacaattcgtgctcttgaagattgtcgattccttgctgaattgagttttg |
39470803 |
T |
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| Q |
309 |
aatacttatcaaacacctatacaacaacaaatcaatctagtaatgt |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39470804 |
aatacttatcaaacacctatacaacaacaaatcaatctagtaatgt |
39470849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 9 - 354
Target Start/End: Original strand, 39449632 - 39449977
Alignment:
| Q |
9 |
agcacagatccattgcctatctactttcgatcttgctctttgtatccttgcatgtagcaaatggtgttcctccagaaaccatttgtgggtctaccgtaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
39449632 |
agcacagatccattgcctatctactttcgatcttgatctttgtatccttgcatgtagcaaatggtattcctccagaaaccatttgtgggtccaccgtaaa |
39449731 |
T |
|
| Q |
109 |
ccctacttattgtagaaacatacttgccaatcaaaatggaaacatttatgactacggtcgaatttcaattcgaaattccttatcgcaatcccgtaagttc |
208 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39449732 |
ccctacttattgtaaaaacatacttgccaatcaaaatggaaacatttatgactacggtcgaatttcaattcgaaaatccttatcgcaatcccgtaagttc |
39449831 |
T |
|
| Q |
209 |
atgaattcaatagactcacaccttcaaggtggttcgtctttgtctcaatccacaattcgtgctcttgaagattgtcgattccttgctgaattgagttttg |
308 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39449832 |
atgaactcaatagactcacaccttcaaggtggttcgtctttgtctcaatccacaattcgtgctcttgaagattgtcgattccttgctgaattgagttttg |
39449931 |
T |
|
| Q |
309 |
aatacttatcaaacacctatacaacaacaaatcaatctagtaatgt |
354 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39449932 |
aatacttatcaaacacctatacaacaacaaatcaatctagtaatgt |
39449977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 9 - 152
Target Start/End: Original strand, 39459742 - 39459885
Alignment:
| Q |
9 |
agcacagatccattgcctatctactttcgatcttgctctttgtatccttgcatgtagcaaatggtgttcctccagaaaccatttgtgggtctaccgtaaa |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39459742 |
agcacagatccattgcctatctactttcgatcttgctctttgtatccttgcatgtagcaaatggtattcctccagaaaccatttgtgggtctaccgtaaa |
39459841 |
T |
|
| Q |
109 |
ccctacttattgtagaaacatacttgccaatcaaaatggaaaca |
152 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39459842 |
ccctacttattgtaaaaacatacttgccaatcaaaatggaaaca |
39459885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 28 - 354
Target Start/End: Complemental strand, 24062608 - 24062282
Alignment:
| Q |
28 |
tctactttcgatcttgctctttgtatccttgcatgtagcaaatggtgttcctccagaaaccatttgtgggtctaccgtaaaccctacttattgtagaaac |
127 |
Q |
| |
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||||||||| |||||| |||||||||| ||| |||||||||| |||||| || ||||||||||| | |||| ||||||||| |||||||| || | |
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| T |
24062608 |
tctactttcaatcttgttctttgtatcattgtgtgtagcaaataatgttccacctgaaaccatttgcaagggtaccataaaccctatttattgtaaaacc |
24062509 |
T |
|
| Q |
128 |
atacttgccaatcaaaatggaaacatttatgactacggtcgaatttcaattcgaaattccttatcgcaatcccgtaagttcatgaattcaatagactcac |
227 |
Q |
| |
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| |||| | | ||||||||||||| |||||||| ||||| ||||| |||||||| |||||||| ||||| |||||||| |||| | | | |||||| |
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| T |
24062508 |
gttcttggtagtgaaaatggaaacatatatgactatggtcgcatttctattcgaaagtccttatcccaatctcgtaagtttgtgaacttattggactcat |
24062409 |
T |
|
| Q |
228 |
accttcaaggtggttcgtctttgtctcaatccacaattcgtgctcttgaagattgtcgattccttgctgaattgagttttgaatacttatcaaacaccta |
327 |
Q |
| |
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| |||||||| |||||||||||||||||||||||||||| |||||||||||||||| || ||||||| | | ||||||||||||||||||||||| || |
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| T |
24062408 |
atcttcaagggagttcgtctttgtctcaatccacaattcgcgctcttgaagattgtcaataccttgctaacctaagttttgaatacttatcaaacactta |
24062309 |
T |
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| Q |
328 |
tacaacaacaaatcaatctagtaatgt |
354 |
Q |
| |
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| ||||||||||||||||||||||| |
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| T |
24062308 |
tggcacaacaaatcaatctagtaatgt |
24062282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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