View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8138_low_1 (Length: 858)
Name: NF8138_low_1
Description: NF8138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8138_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 705; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 13 - 840
Target Start/End: Original strand, 39450144 - 39450969
Alignment:
| Q |
13 |
attattcttagtcatacacatgcttacaaaccacatatcaagaattattgaatataattttccacagtccatacatgcacgatgatataaagacaacatt |
112 |
Q |
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| T |
39450144 |
attattcttagtcatacacatgcttacaaaccacatatcaagaattattgaatataattttccacagtccatacatgcacgatgatataaagacaacatt |
39450243 |
T |
|
| Q |
113 |
tcaacatcacctcactttcattccacaaagttctcatcacatgccatccagcatagccatgacatcacttccaagactctttttactcactgtcgtttga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39450244 |
tcaacatcacctcactttcattccacaaagttctcatcacatgccatccagcatagccatgacatcacttccaagactctttttactcactgtcgtttga |
39450343 |
T |
|
| Q |
213 |
aatttcaatgaatttgaccaagtcacaactcatatgtcattttatctaaagtatgtttttggtttaaatcacagtagtacagcctgcaaactagtaaagc |
312 |
Q |
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| T |
39450344 |
aatttcaatgaatttgaccaagtcacaactcatgtgtcattttgtctaaagtatgtttttggtttaaatcacagtagtacagcctgcaaactagtaaagc |
39450443 |
T |
|
| Q |
313 |
ctttattttaccggactcatcgtctgtctaaacatacacttaagttaattaaatctcttctcttcttccaaaagtgatttcaatagtattannnnnnnat |
412 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39450444 |
cttaattttaccggactcatcgtctgtctaaacatacacttaagttaattaaatctcttctcttcttccaaaagtgatttcaatagtatta-ttttttat |
39450542 |
T |
|
| Q |
413 |
ttctaaataatctagtaacgaaattcatatacactaaatattgaaaaatagataattgcttattcgaatttacacccagtacgtcaactattcttctgtc |
512 |
Q |
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| T |
39450543 |
ttctaaataatctagtaaccaaattcatatacactaaatattgaaaaatagataattgcttattcgaatttacacccagtacgtcaactatttttctgtc |
39450642 |
T |
|
| Q |
513 |
tttttaccacatgaacaatacttactgcatcgtttctatccatccatatttagaaagcatgtcaatgatacgttgattataatttaaaagaaaaatataa |
612 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
39450643 |
tttttaccacatgaacaatacttactgcatcgtttctatccattc-tatccagaaagtatgtcaatgatacgttgataataatttaaaagaaaaatataa |
39450741 |
T |
|
| Q |
613 |
gttatcaaatgtaatgtttaccatatataaataatgctgtcacgccttcaatattctaaccaattctctagaatctctacactaatcagtcctactgagt |
712 |
Q |
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| T |
39450742 |
gttatcaaatgtaatgtttaccatatataaataatgctgtcacgccttcaatattctaaccaattctctagaatctctacactaatcagtcctactgagt |
39450841 |
T |
|
| Q |
713 |
ttggaggtttcctattcctatttcctatagaaataaacatatcaaagaacaattcnnnnnnnnnnnnnnngtaacacagtaagtgtatatcctattatcc |
812 |
Q |
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| T |
39450842 |
ttggaggtttcctattcctatttcctatataaataaacatatcaaagaacaattcaaaaaataaaaaatagtaacacagtaagtgtatatcctattatcc |
39450941 |
T |
|
| Q |
813 |
tgtgcttcaagatgaagaaagcagaagt |
840 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
39450942 |
tgtgcttcaagatgaagaaagcagaagt |
39450969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 186
Target Start/End: Original strand, 39486137 - 39486212
Alignment:
| Q |
111 |
tttcaacatcacctcactttcattccacaaagttctcatcacatgccatccagcatagccatgacatcacttccaa |
186 |
Q |
| |
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|||||| |||||||||||||||||||||| |||| ||||| || | | |||||| ||||||||||||||| |||| |
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| T |
39486137 |
tttcaatatcacctcactttcattccacatagttgtcatcctatactagccagcaaagccatgacatcactcccaa |
39486212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 808 - 842
Target Start/End: Original strand, 39460187 - 39460221
Alignment:
| Q |
808 |
tatcctgtgcttcaagatgaagaaagcagaagttg |
842 |
Q |
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||||||||||| ||||||||||||||||||||||| |
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| T |
39460187 |
tatcctgtgctccaagatgaagaaagcagaagttg |
39460221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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