View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8138_low_2 (Length: 420)
Name: NF8138_low_2
Description: NF8138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8138_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 19695311 - 19694911
Alignment:
| Q |
1 |
aatcaacttactctaactaccaagtgatgtaactactaactgcacaagactaagaacagaaaagagaccaactaactattgacatggctaaggagtgatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19695311 |
aatcaacttactctaactaccaagtgatgtaactactaactgcacaagactaagaacagaaaagagaccaactaactattgacatggctaaggagtgatg |
19695212 |
T |
|
| Q |
101 |
gatgacaattatactcgacttggaggtaagcaaagtgaaggtcttgagaagcaggacaaacaatgtctacacatattacaatcaattctgtgttttgtgc |
200 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19695211 |
gatgacaattatactcgacttggaggtaaggagagtgaaggtcttgagaagcaggacaaacaatgtctacacatattacaatcaattctgtgttttgtgc |
19695112 |
T |
|
| Q |
201 |
attcgtagaatacatgagtattaacacgtggtgttagtcataatatcagaccaggttctgatgtgtctaaagaagcataattttttgttgtcaaaaaccc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
19695111 |
attcgtagaatacatgagtattaacacgtggtgttagtcataatatcagaccaggttctgatgtgtctaaagaagcataatcttttgttgtcaaaaaccc |
19695012 |
T |
|
| Q |
301 |
gaaataaacgctatattaggcttgtaatttgcccatctggatttgaagtaaatataaaaagaattagttctatgttttaaattgaaaattgttgttcaca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19695011 |
gaaataaacgctatattaggcttgtaatttgcccatctggatttgaagtaaatataaaaagaattagttctatgttttaaattgaaaatcgttgttcaca |
19694912 |
T |
|
| Q |
401 |
c |
401 |
Q |
| |
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| |
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|
| T |
19694911 |
c |
19694911 |
T |
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