View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8138_low_3 (Length: 353)
Name: NF8138_low_3
Description: NF8138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8138_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 30666655 - 30666995
Alignment:
| Q |
1 |
ttgatgttttgtagggtcgagaaattcttggtgatgtgaacaacaagcttgtccataaaagcaggagcaatgtaaaatccatccatagtgttgtcaaagt |
100 |
Q |
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| T |
30666655 |
ttgatgtttggtagggtcaagaaattcttggtgatgtgaacaacaagcttgtccataaaagcaggagcaatgtaaaatccatccatagtgttgtcaaagt |
30666754 |
T |
|
| Q |
101 |
tgtacctaaaacaccatcatcacaagttagatcaaaagaaacttcatttacaaaccatagtaataaaatcatgagcaaattacgagtatttggttttgaa |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30666755 |
tgtacctaaaacaccatcatcacaggttagatcaaaagaaacttcatttacaaaccatagtaataaaatcatgagcaaattacgagtatttggttttgaa |
30666854 |
T |
|
| Q |
201 |
ttaacaaattgcgtagcaagtcactcactgtttaagtccagtactaaggtactcataagaactcatgactgcataatgagttccagtatcttgtggtgct |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30666855 |
ttaacaaaatgcgtagcaagtcactcactgtttaagtccagtactaaggtactcataagaactcatgactgcataatgagttccagtatcttgtggtgct |
30666954 |
T |
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| Q |
301 |
tggaaaactgaatcaaccataccctttcctcttgtgatgtc |
341 |
Q |
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| T |
30666955 |
tggaaaactgaatcaaccataccctttcctcttgtgatgtc |
30666995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 221 - 341
Target Start/End: Original strand, 34436947 - 34437067
Alignment:
| Q |
221 |
tcactcactgtttaagtccagtactaaggtactcataagaactcatgactgcataatgagttccagtatcttgtggtgcttggaaaactgaatcaaccat |
320 |
Q |
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| T |
34436947 |
tcacttactgtctaagtccagtactaatgtactcataagaactcatgactgcataatgagttccagaatcttgtggtgcttggaaaactgtatcaaccat |
34437046 |
T |
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| Q |
321 |
accctttcctcttgtgatgtc |
341 |
Q |
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| T |
34437047 |
acccttccctcttgtgatgtc |
34437067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 34436485 - 34436585
Alignment:
| Q |
20 |
agaaattcttggtgatgtgaacaacaagcttgtccataaaagcaggagcaatgtaaaatccatccatagtgttgtcaaagttgtacctaaaacaccatca |
119 |
Q |
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|||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| ||||||||| ||| ||||||| |
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| T |
34436485 |
agaagttcttagtgatgtgtacaacaagcttgtccataaaagcaggtgcaatgtaaaaaccatccatggtgttgtcaaggttgtacctgaaataccatca |
34436584 |
T |
|
| Q |
120 |
t |
120 |
Q |
| |
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| T |
34436585 |
t |
34436585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 6854143 - 6854189
Alignment:
| Q |
25 |
ttcttggtgatgtgaacaacaagcttgtccataaaagcaggagcaat |
71 |
Q |
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| T |
6854143 |
ttcttagtgatgtgaacaacaagcttgtccataaatgcaggtgcaat |
6854189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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