View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8138_low_6 (Length: 444)
Name: NF8138_low_6
Description: NF8138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8138_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 21 - 434
Target Start/End: Original strand, 19694911 - 19695324
Alignment:
| Q |
21 |
gtgtgaacaacaattttcaatttaaaacatagaactaattctttttatatttacttcaaatccagatgggcaaattacaagcctaatatagcgtttattt |
120 |
Q |
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| T |
19694911 |
gtgtgaacaacgattttcaatttaaaacatagaactaattctttttatatttacttcaaatccagatgggcaaattacaagcctaatatagcgtttattt |
19695010 |
T |
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| Q |
121 |
cgggtttttgacaacaaaaaattatgcttctttagacacatcagaacctggtctgatattatgactaacaccacgtgttaatactcatgtattctacgaa |
220 |
Q |
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| T |
19695011 |
cgggtttttgacaacaaaagattatgcttctttagacacatcagaacctggtctgatattatgactaacaccacgtgttaatactcatgtattctacgaa |
19695110 |
T |
|
| Q |
221 |
tgcacaaaacacagaattgattgtaatatgtgtagacattgtttgtcctgcttctcaagaccttcactttgcttacctccaagtcgagtataattgtcat |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
19695111 |
tgcacaaaacacagaattgattgtaatatgtgtagacattgtttgtcctgcttctcaagaccttcactctccttacctccaagtcgagtataattgtcat |
19695210 |
T |
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| Q |
321 |
ccatcactccttagccatgtcaatagttagttggtctcttttctgttcttagtcttgtgcagttagtagttacatcacttggtagttagagtaagttgat |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19695211 |
ccatcactccttagccatgtcaatagttagttggtctcttttctgttcttagtcttgtgcagttagtagttacatcacttggtagttagagtaagttgat |
19695310 |
T |
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| Q |
421 |
tttccatttctctg |
434 |
Q |
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|||||||||||||| |
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| T |
19695311 |
tttccatttctctg |
19695324 |
T |
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