View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8138_low_8 (Length: 356)

Name: NF8138_low_8
Description: NF8138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8138_low_8
NF8138_low_8
[»] chr4 (2 HSPs)
chr4 (1-344)||(31151720-31152065)
chr4 (3-55)||(29011514-29011566)
[»] chr3 (4 HSPs)
chr3 (3-101)||(17575753-17575851)
chr3 (3-47)||(40026108-40026152)
chr3 (1-56)||(11414565-11414620)
chr3 (4-65)||(35231873-35231934)
[»] chr7 (1 HSPs)
chr7 (4-65)||(29428919-29428980)
[»] chr6 (1 HSPs)
chr6 (1-65)||(19694618-19694682)
[»] chr1 (3 HSPs)
chr1 (2-65)||(23473767-23473830)
chr1 (4-74)||(50109050-50109120)
chr1 (4-65)||(35306817-35306878)
[»] chr8 (2 HSPs)
chr8 (4-65)||(20989717-20989778)
chr8 (4-46)||(38679751-38679793)
[»] chr5 (2 HSPs)
chr5 (8-65)||(15021740-15021797)
chr5 (3-103)||(32233012-32233112)


Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 31151720 - 31152065
Alignment:
Q  1 aaattccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattccgtccgatattacacattccatcaattttttattcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31151720 aaattccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaatccattccgtccgatattacacattccatcaattttttattcc 31151819  T
Q  101 ctcaatgcggggtgtatcggaatagagtctcataattacataattgctactttacctctattctcttttttcatcgaaccattgattctgctcc--nnnn 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  31151820 ctcaatgcggggtgtatcggaatagagtctcataattacataattgctactttacctctattctcttttttcatcgaaccattgattctgctcctttttt 31151919  T
Q  199 nnnnccgtttacctttcaagaagtttcagttagccaagactatttggatcagttgtttgatttactatggttgctatcggaagaaatagatttacaagat 298  Q
         ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31151920 tttttcgtttacctttcaagaagtttaagttagccaagactatttggatcagttgtttgatttactatggttgctatcggaagaaatagatttacaagat 31152019  T
Q  299 ttactgttaagggtaaaaacggaatagaaaagttataacttatttt 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31152020 ttactgttaagggtaaaaacggaatagaaaagttataacttatttt 31152065  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 29011514 - 29011566
Alignment:
Q  3 attccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatgg 55  Q
    |||||||||||| |||||  ||||||||||| |||||| ||||||||| ||||    
T  29011514 attccattgtttgaattttaaaaaaatgaatggaatgggatggaacatgatgg 29011566  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 17575753 - 17575851
Alignment:
Q  3 attccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattccgtccgatattacacattccatcaattttttattccc 101  Q
    |||| ||||||| |||||||||||||| ||||   || ||||||||||||||||||||||||| ||  |||| || || ||| ||||||||| ||||||    
T  17575753 attctattgtttgaatttgtaaaaaatcaataatgtgaaatggaacataatggaattcattccatctcatatcactcaatccttcaatttttcattccc 17575851  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 40026152 - 40026108
Alignment:
Q  3 attccattgtttaaatttgtaaaaaatgaatagaatggaatggaa 47  Q
    |||||||||||| | ||||||||||||||||||||||||||||||    
T  40026152 attccattgtttgattttgtaaaaaatgaatagaatggaatggaa 40026108  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 11414565 - 11414620
Alignment:
Q  1 aaattccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatgga 56  Q
    |||||| |||||||  ||||||||| | ||||||||||||||||||||||||||||    
T  11414565 aaattctattgtttggatttgtaaatagtgaatagaatggaatggaacataatgga 11414620  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 35231934 - 35231873
Alignment:
Q  4 ttccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattcc 65  Q
    |||||||||||| |||| |||||| || || |||||| ||||||||| ||||||| ||||||    
T  35231934 ttccattgtttagatttctaaaaattggatggaatggtatggaacatgatggaatccattcc 35231873  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 29428919 - 29428980
Alignment:
Q  4 ttccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattcc 65  Q
    |||||||||||  ||||||||||||||||| |||||||||| ||||| ||||||| ||||||    
T  29428919 ttccattgtttggatttgtaaaaaatgaatggaatggaatgaaacatgatggaatccattcc 29428980  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 19694682 - 19694618
Alignment:
Q  1 aaattccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattcc 65  Q
    ||||||||||||||  ||||| ||||||| ||| ||| |||||||||||||||||||| ||||||    
T  19694682 aaattccattgtttggatttgcaaaaaattaatggaagggaatggaacataatggaatccattcc 19694618  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 23473767 - 23473830
Alignment:
Q  2 aattccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattcc 65  Q
    |||||||||||||  || |||||||| ||||| |||||||||||||||| ||||||| ||||||    
T  23473767 aattccattgtttggatgtgtaaaaattgaatggaatggaatggaacatgatggaatccattcc 23473830  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 50109120 - 50109050
Alignment:
Q  4 ttccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattccgtccgatat 74  Q
    |||||||||||  |||||||| |||||||| || ||||||||||||| ||||||| |||||| ||| ||||    
T  50109120 ttccattgtttggatttgtaagaaatgaatggagtggaatggaacatgatggaatccattccatcccatat 50109050  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 35306878 - 35306817
Alignment:
Q  4 ttccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattcc 65  Q
    |||||||||||| |||| |||||| || || |||||| ||||||||| ||||||| ||||||    
T  35306878 ttccattgtttagatttctaaaaattggatggaatggtatggaacatgatggaatccattcc 35306817  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 20989717 - 20989778
Alignment:
Q  4 ttccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattcc 65  Q
    ||||||||||||  ||| |||||||||||| |||||||||||||||  ||||||| ||||||    
T  20989717 ttccattgtttaggtttataaaaaatgaatggaatggaatggaacaagatggaatccattcc 20989778  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 38679751 - 38679793
Alignment:
Q  4 ttccattgtttaaatttgtaaaaaatgaatagaatggaatgga 46  Q
    |||||||||||   |||||||||||||||||||||||||||||    
T  38679751 ttccattgtttggttttgtaaaaaatgaatagaatggaatgga 38679793  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 15021740 - 15021797
Alignment:
Q  8 attgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattcc 65  Q
    |||||||  |||||| ||||||||||  ||||| |||||||| |||||||||||||||    
T  15021740 attgttttgatttgttaaaaatgaatgaaatggtatggaacacaatggaattcattcc 15021797  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 32233012 - 32233112
Alignment:
Q  3 attccattgtttaaatttgtaaaaaatgaatagaatggaatggaacataatggaattcattccgtccgatattacacattccatcaattttttattccct 102  Q
    ||||||||||||  ||||| ||||| ||||| || |||||||||| | ||||||| ||||||| ||| |||  || ||  || ||||||||| |||||||    
T  32233012 attccattgtttggatttgcaaaaagtgaatggagtggaatggaatacaatggaactcattccatccaataccacccaaaccttcaatttttcattccct 32233111  T
Q  103 c 103  Q
    |    
T  32233112 c 32233112  T

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