View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8139_low_2 (Length: 569)
Name: NF8139_low_2
Description: NF8139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8139_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 17 - 556
Target Start/End: Complemental strand, 24533531 - 24532995
Alignment:
| Q |
17 |
aacaatacccaggttttaaggaagtgcgcttgatcgaagcaaagccaggtatcacgtttgtagattttgaagatgaggggaaatcatccatggcaatgca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
24533531 |
aacaatacccaggttttaaggaagtgcgcttgatcgaagcaaagccaggtatcgcgtttgtagatttcgaagatgaggggcaatcatccatggcaatgca |
24533432 |
T |
|
| Q |
117 |
ggctcttcaaggattcaaaatcaccccacaaaatcccatgattataaactttgctaaaaactttgctaatcgattttttgcggtcaatatttgaagcaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||| |||||||||||||||||| |
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| T |
24533431 |
ggctcttcaaggattcaaaatcaccccacaaaatcccatgattataaactttgctaaaaagtaa-ctaatcgattttctgcagtcaatatttgaagcaaa |
24533333 |
T |
|
| Q |
217 |
ttttgcgtactgtattggtgtagatcttttcaaaatcagttacagaagttgtaagtttacaacaagttgaattaaagtagatggaaagtgagagatctat |
316 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24533332 |
ttttgcgtattgtattggtgtagatcttttcaaaatcagttgcagaagttgtaagtttacaacaagttggattaaagtagatggaaagtgagagatctat |
24533233 |
T |
|
| Q |
317 |
atatatcacatttgtgggaagattgaaatagtgcttggtataatgatgtctattgattgtatgtggtgtttattttcattttctctttataacatttttc |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||| ||||| |
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| T |
24533232 |
atatatcacatttgtgggaagattgaaatagtgcttggtataacgatgtctattgattgtatgtg--gtttattttcattttctctgtataacagttttc |
24533135 |
T |
|
| Q |
417 |
tcatttactttgtaaactaggttctgttagttgtttcatttcattgtcattgacatagacaaaaaataatgaatcagatcctgccttaattctttttgcg |
516 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24533134 |
tcatttactttgtaaactaggttctattagttgtttcatttcattgtcattgacatagacaaaaaataatgaatcagatcctaccttaattctttttgcg |
24533035 |
T |
|
| Q |
517 |
taaaaataacagctcaattcttcttatggtccttaacttc |
556 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
24533034 |
taaaaataacagctcaattcttcttatggtccttaacttc |
24532995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 462
Target Start/End: Complemental strand, 31631882 - 31631445
Alignment:
| Q |
17 |
aacaatacccaggttttaaggaagtgcgcttgatcgaagcaaagccaggtatcacgtttgtagattttgaagatgaggggaaatcatccatggcaatgca |
116 |
Q |
| |
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|||||||||||||||| |||||||| |||||||| |||||||||||||||||| |||| ||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
31631882 |
aacaatacccaggtttcaaggaagtacgcttgatagaagcaaagccaggtatcgcgttcgtagattttgaagatgatgggcaatcatccatggcaatgca |
31631783 |
T |
|
| Q |
117 |
ggctcttcaaggattcaaaatcaccccacaaaatcccatgattataaactttgctaaaaactttgctaatcgattttttgcggtcaatatttgaagcaaa |
216 |
Q |
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|||||||||||| |||||||| ||||| |||||||||||||| |||||||||||||| || | ||||||| |||| ||| |||||||| |||||||| |
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| T |
31631782 |
ggctcttcaaggcttcaaaattacccctcaaaatcccatgatcataaactttgctaagaagtaa-ctaatcgcttttctgcattcaatattcgaagcaaa |
31631684 |
T |
|
| Q |
217 |
ttttgcgtactgtattggtgtagatcttttcaaaatcagttacagaagttgtaagtttacaacaagttgaattaaagtagatggaaagtgagagatctat |
316 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| || || ||||||||||||||||||| ||||| ||||||||||| |||||||||| ||| |
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| T |
31631683 |
ttttgcgtactgtattagtgtagatcttttcaaaaccaattgcagaagttgtaagtttacaggaagttagattaaagtagacggaaagtgagtaatc--- |
31631587 |
T |
|
| Q |
317 |
atatatcacatttgtgggaagattgaaatagtgcttggtataatgatgtctattgattgtatgtggtgtttattttcattttctctttataacatttttc |
416 |
Q |
| |
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|||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||| |||| |
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| T |
31631586 |
-tatatcacatttgtcggaagattgaggcagtgcttggtataacaatgtctattgattgtatgtg--gtttattttcattttctctgtataaca-atttc |
31631491 |
T |
|
| Q |
417 |
tcatttactttgtaaactaggttctgttagttgtttcatttcattg |
462 |
Q |
| |
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||||||||||||||||||||||||| | || |||| |||||||||| |
|
|
| T |
31631490 |
tcatttactttgtaaactaggttctatgagctgttacatttcattg |
31631445 |
T |
|
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