View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8139_low_3 (Length: 427)
Name: NF8139_low_3
Description: NF8139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8139_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 17 - 419
Target Start/End: Original strand, 228062 - 228464
Alignment:
| Q |
17 |
gttaggctaggtgttgggaagagaaccatatgtgcaactcttggaatcaaaagaactaggttttgagtaatgatactatttcactttctcgcatatttta |
116 |
Q |
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| T |
228062 |
gttaggctaggtgttgggaagagaacaatatgtgcaactcttagaatcaaaagaactaggttttgagtaatgatactatttcactttctcgcatatttta |
228161 |
T |
|
| Q |
117 |
acacaccctttaaga-aaaaactgtgaaattcttagctagcatggaatcccgggtctttaatttacacaacatgtctactgcgatgaaagctaaactgtt |
215 |
Q |
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| T |
228162 |
acacaccctttaagataaaaactgtgaaattcttagctagcatggaatcccgggtctttaatttacacaacatgtctactgcgatgaaagctaaactgtt |
228261 |
T |
|
| Q |
216 |
aaagcatgtgtcatgttcaagatacattattagttcttcatcaaggatgaagtatagttatattggcatacatactctctgaaaagcctaaaaaaccaaa |
315 |
Q |
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| T |
228262 |
aaagcatgtgtcatgttcaagatacataattagttcttcatcaaggatgaagtatagttatattggcatacatactctctgaaaagcctaaaaaaccaaa |
228361 |
T |
|
| Q |
316 |
acctagcaatgcatatgcagtttcaataatataaaagcaatcacaggtaacaggaataaaaatgacnnnnnnnnnggcacattgaactctaagaaagaat |
415 |
Q |
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| T |
228362 |
acctagcaatgcatatgcagtttcaataatataaaagcaatcacaggtaacaggaataaaaatgac-atttttttggcacattgaactctaagaaagaat |
228460 |
T |
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| Q |
416 |
aatc |
419 |
Q |
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|||| |
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| T |
228461 |
aatc |
228464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 419
Target Start/End: Original strand, 238916 - 239322
Alignment:
| Q |
17 |
gttaggctaggtgttgggaagagaaccatatgtgcaactcttggaatcaaaagaactaggttttga-------gtaatgatactatttcactttctcgca |
109 |
Q |
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| T |
238916 |
gttaggctaggtgttagcaagatagcagtatgtgcgactcctagaatcaaaggaactaggttttgacttttgagtagtgatattatttcactttctcgca |
239015 |
T |
|
| Q |
110 |
tattttaacacaccctttaaga-aaaaactgtgaaattcttagctagcatggaatcccgggtctttaatttacacaacatgtctactgcgatgaaagcta |
208 |
Q |
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||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
239016 |
tattttaacacacccttcaagataaaaactgtgaaatttttagctagcatggaatccctggtctttaatttacacaacatgtctactgcgatgaaggcta |
239115 |
T |
|
| Q |
209 |
aactgttaaagcatgtgtcatgttcaagatacattattagttcttcatcaaggatgaagtatagttatattggcatacatactctctgaaaagcctaaaa |
308 |
Q |
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| T |
239116 |
aactgttaaagcatgtgtcatgttcaagatacattattagttcttcatccaggatgaggtatagttatattg----tcatactctctgaaaagcctaaaa |
239211 |
T |
|
| Q |
309 |
aaccaaaacctagcaatgcatatgcagtttcaataatataaaagcaatcacaggtaacaggaataaaaatgacnnnnnnnnnggcacattgaactctaag |
408 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
239212 |
aaccaaattctagcaatgcatatgcagtttcaataatataaaagcaatcactggtaacaggaataaaaatgacatttattttggcacattgaactctaag |
239311 |
T |
|
| Q |
409 |
aaagaataatc |
419 |
Q |
| |
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||||||||||| |
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| T |
239312 |
aaagaataatc |
239322 |
T |
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