View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8140_low_1 (Length: 357)
Name: NF8140_low_1
Description: NF8140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8140_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 85 - 339
Target Start/End: Complemental strand, 45673212 - 45672961
Alignment:
| Q |
85 |
cctctcttcaataattttagattagtcacaaattaataataat---ggctcttgaaactgtggttttcccacaacaagatccattcacatatagttacaa |
181 |
Q |
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| T |
45673212 |
cctctcttcaataattttagattagtcacaaattaataataataatggctcttgaaactgtggttttcccacaacaagatccattcacatatagttacaa |
45673113 |
T |
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| Q |
182 |
agacaattacttcaactctttgaataatgactatgatcatcttcatgcggatgcggaagaacaagagaatgttctcctaggaatcatcaacaatgaacaa |
281 |
Q |
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| T |
45673112 |
agacaattacttcaactctttgaataatgactatgatcatcttcatg------cggaagaacaagagaatgttctcctaggaatcatcaacaatgaacaa |
45673019 |
T |
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| Q |
282 |
caaaatctccatgcaaactgggatcatcaatgggaatattcacactcttcctctcctg |
339 |
Q |
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| T |
45673018 |
caaaatctccatgcaaactgggatcatcaatgggaatattcacactcttcctctcctg |
45672961 |
T |
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