View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8141_high_1 (Length: 532)
Name: NF8141_high_1
Description: NF8141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8141_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 19 - 518
Target Start/End: Complemental strand, 52807745 - 52807243
Alignment:
| Q |
19 |
gtgcctcaacaaaatggacattggggtgcacaaatatatgcaaatcaccaaagaatatggttagggacattcaaatctgaaagagatgctgccatggctt |
118 |
Q |
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| T |
52807745 |
gtgcctcaacaaaatggacattggggtgcacaaatatatgcaaatcaccaaagaatatggttagggacattcaaatctgaaagagatgctgccatggctt |
52807646 |
T |
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| Q |
119 |
acgacagcgccaccattaagctcagaagcagagaaagccatagaaactttgcatggaataaccaaacagttgaagaacctatgtttcaaagtcaatataa |
218 |
Q |
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| T |
52807645 |
acgacagcgccaccattaagctcagaagcagagaaagccatagaaactttgcatggaataaccaaacagttcaagaacctatgtttcaaagtcaatatag |
52807546 |
T |
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| Q |
219 |
catggaaacaattatgatcatgattagaaatggaacatacccctctaattttgcaacaacatttcttagaaataatgaaa---gccaaggtgcaggcaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
52807545 |
catggaaacaattatgatcatgattagaaatggaacatacccctctaattttgcaacaacatttcttagaaataatgaaaggcgccaaggtgcaggcaaa |
52807446 |
T |
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| Q |
316 |
gaaggtgttgttataggggtgaagggtgaggaacaattttcttgcacacaactactttttcaaaaagaattaacaccaagtgatgttggtaaactcaata |
415 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807445 |
gaaggtgttgttataggggtgaaggatgaggaacaattttcttgcacacaactactttttcaaaaagaattaacaccaagtgatgttggtaaactcaata |
52807346 |
T |
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| Q |
416 |
ggcttgtcgtcccgaaaaaacatgcagttacctattttcctttggtttgtggcaatgacgtggaagttgtgttttatgacaaactcatgcgattgtggaa |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52807345 |
ggcttgtcgtcccgaaaaaacatgcagttacctattttcctttggtttgtggcaatgacgtggaagttgtgttttatgacaaactcatgcgattgtggaa |
52807246 |
T |
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| Q |
516 |
gtt |
518 |
Q |
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| T |
52807245 |
gtt |
52807243 |
T |
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