View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8141_high_3 (Length: 267)

Name: NF8141_high_3
Description: NF8141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8141_high_3
NF8141_high_3
[»] chr6 (10 HSPs)
chr6 (2-251)||(11170259-11170508)
chr6 (1-251)||(11209080-11209330)
chr6 (31-228)||(11275672-11275869)
chr6 (37-228)||(11155994-11156185)
chr6 (37-228)||(11160861-11161052)
chr6 (37-228)||(11196447-11196638)
chr6 (37-228)||(11199437-11199628)
chr6 (37-228)||(11241676-11241867)
chr6 (67-166)||(11315048-11315147)
chr6 (40-110)||(11132721-11132791)
[»] scaffold1207 (1 HSPs)
scaffold1207 (1-226)||(576-801)


Alignment Details
Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 11170259 - 11170508
Alignment:
Q  2 ttttgcataactccgtcccactgctctttttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaac 101  Q
    |||| ||||||||||||||||| | ||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11170259 ttttacataactccgtcccactacccttattaattccaaagaaatcaatcaaacgttgttgcacttttacaatcctggtagagccgccaacaagcacaac 11170358  T
Q  102 atcatgaatgttagtcttcactatcccactatcttttatacacttttctacactctccatgcactgctcaaaaagactcttgctgagatcgtcgaaattt 201  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||| ||    
T  11170359 atcatgaattttactcttcactatcccactatcttctatacacttttctacactctccatgcaccggtcaaaaagactcttactgagattgtcgaaaatt 11170458  T
Q  202 gcacgactaatcactgaggagaaatcttcacctttatataaacaatctat 251  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11170459 ccacgactaatcactgaggagaaatcttcacctttatataaacaatctat 11170508  T

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Target: chr6; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 11209080 - 11209330
Alignment:
Q  1 cttttgcataactccgtcccactgctctttttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaa 100  Q
    ||||| ||||||||||||||||| |  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11209080 cttttacataactccgtcccactaccttttttaattccaaagaaatcaatcaaaagttgttgcacttttacaatcctggtagacccgccaacaagcacaa 11209179  T
Q  101 catcatgaatgttagtcttcactatcccactatcttttatacacttttctacactctccatgcactgctcaaaaagactcttgctgagatcgtcgaaatt 200  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||| ||    
T  11209180 catcatgaatgttactcttcactatcccactatcttctatacacttttctacaatctccatgcactggtcaaaaagactcttgttgagatcgtcgaactt 11209279  T
Q  201 tgcacgactaatcactgaggagaaatcttcacctttatataaacaatctat 251  Q
    |||||||||||||  |||  | ||||||| ||||| || ||||||||||||    
T  11209280 tgcacgactaatcgttgacaaaaaatctttaccttcatttaaacaatctat 11209330  T

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Target: chr6; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 31 - 228
Target Start/End: Original strand, 11275672 - 11275869
Alignment:
Q  31 ttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttagtcttcactatcccac 130  Q
    |||||| | |||||||||| |||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||   ||||||||    
T  11275672 ttaatttcaaagaaatcaaccaaaaggtcttgcacttttacaatcctggtagacccgccaacaagcacaacatcatgaatgttactcttgtttatcccac 11275771  T
Q  131 tatcttttatacacttttctacactctccatgcactgctcaaaaagactcttgctgagatcgtcgaaatttgcacgactaatcactgaggagaaatct 228  Q
    |||||  |||||||||||||||| | ||||||||||| | ||||||||||||| ||||||| ||||| ||||||||||||||||  ||||||||||||    
T  11275772 tatctgctatacacttttctacaatttccatgcactggtaaaaaagactcttgttgagatcatcgaactttgcacgactaatcaacgaggagaaatct 11275869  T

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Target: chr6; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 37 - 228
Target Start/End: Original strand, 11155994 - 11156185
Alignment:
Q  37 ccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttagtcttcactatcccactatctt 136  Q
    |||||||||||| |||  | |||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||  | |||||||||||      
T  11155994 ccgaagaaatcactcaccatttgttgcacttttacaatcctggtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaa 11156093  T
Q  137 ttatacacttttctacactctccatgcactgctcaaaaagactcttgctgagatcgtcgaaatttgcacgactaatcactgaggagaaatct 228  Q
    ||||||||||||| ||| ||||||||||||  || ||  || ||||| |||| || || || |||||||||||||||  |||| ||||||||    
T  11156094 ttatacacttttccacaatctccatgcacttgtcgaagtgattcttgttgagttcctcaaactttgcacgactaatcgatgagtagaaatct 11156185  T

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Target: chr6; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 37 - 228
Target Start/End: Original strand, 11160861 - 11161052
Alignment:
Q  37 ccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttagtcttcactatcccactatctt 136  Q
    |||||||||||| |||  | ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| || ||||  | |||||||||||      
T  11160861 ccgaagaaatcactcaccatttgttgcacttttacaatcctagtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaa 11160960  T
Q  137 ttatacacttttctacactctccatgcactgctcaaaaagactcttgctgagatcgtcgaaatttgcacgactaatcactgaggagaaatct 228  Q
    ||||||||||||||||| ||||||||||||  || ||  || ||||| |||| || || || ||||| |||||||||  |||| ||||||||    
T  11160961 ttatacacttttctacaatctccatgcacttgtcgaagtgattcttgttgagttcctcaaactttgcgcgactaatcgatgagtagaaatct 11161052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 37 - 228
Target Start/End: Original strand, 11196447 - 11196638
Alignment:
Q  37 ccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttagtcttcactatcccactatctt 136  Q
    |||||||||||| |||  | ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| || ||||  | |||||||||||      
T  11196447 ccgaagaaatcactcaccatttgttgcacttttacaatcctagtagagccgccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaa 11196546  T
Q  137 ttatacacttttctacactctccatgcactgctcaaaaagactcttgctgagatcgtcgaaatttgcacgactaatcactgaggagaaatct 228  Q
    ||||||||||||| ||| ||||||||||||  || ||  || ||||| |||| || || || ||||| |||||||||  |||| ||||||||    
T  11196547 ttatacacttttccacaatctccatgcacttgtcgaagtgattcttgttgagttcctcaaactttgcgcgactaatcgatgagtagaaatct 11196638  T

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Target: chr6; HSP #7
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 37 - 228
Target Start/End: Original strand, 11199437 - 11199628
Alignment:
Q  37 ccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttagtcttcactatcccactatctt 136  Q
    |||||||||||| |||  | ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| || ||||  | |||||||||||      
T  11199437 ccgaagaaatcactcaccatttgttgcacttttacaatcctagtagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaa 11199536  T
Q  137 ttatacacttttctacactctccatgcactgctcaaaaagactcttgctgagatcgtcgaaatttgcacgactaatcactgaggagaaatct 228  Q
    ||||||||||||||||| ||||||||||||  || ||  || ||||| |||| || || || ||||| |||||||||  |||| ||||||||    
T  11199537 ttatacacttttctacaatctccatgcacttgtcgaagtgattcttgttgagttcctcaaactttgcgcgactaatcgatgagtagaaatct 11199628  T

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Target: chr6; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 37 - 228
Target Start/End: Complemental strand, 11241867 - 11241676
Alignment:
Q  37 ccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaatgttagtcttcactatcccactatctt 136  Q
    |||||||||||| |||  | |||||||||||||||||||||  ||||||| |||||||| ||||||||||||||| || ||||  | |||||||||||      
T  11241867 ccgaagaaatcactcaccatttgttgcacttttacaatcctaatagagccaccaacaaggacaacatcatgaatgctactcttgtccatcccactatcaa 11241768  T
Q  137 ttatacacttttctacactctccatgcactgctcaaaaagactcttgctgagatcgtcgaaatttgcacgactaatcactgaggagaaatct 228  Q
    ||||||||||||| ||| ||||||||||||  || ||  || ||||| |||| || || || ||||| |||||||||  |||| ||||||||    
T  11241767 ttatacacttttccacaatctccatgcacttgtcgaagtgattcttgttgagttcctcaaactttgcgcgactaatcgatgagtagaaatct 11241676  T

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Target: chr6; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 166
Target Start/End: Complemental strand, 11315147 - 11315048
Alignment:
Q  67 tttacaatcctggtagagccgccaacaagcacaacatcatgaatgttagtcttcactatcccactatcttttatacacttttctacactctccatgcact 166  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| | |||| || ||||||||||| | || ||||||||||||| ||| ||||||||    
T  11315147 tttacaatcctagtagagccgccaacaagcacaacatcatgaatgtcactcttgaccatcccactatcctctagacacttttctacaatcttcatgcact 11315048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 11132721 - 11132791
Alignment:
Q  40 aagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaacatcatgaat 110  Q
    ||||||||| |||| | |||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||    
T  11132721 aagaaatcactcaatatttgttgtacttttacaatcctcgtagacccgccaacaaggacaacatcatgaat 11132791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 576 - 801
Alignment:
Q  1 cttttgcataactccgtcccactgctctttttaattccgaagaaatcaatcaaaagttgttgcacttttacaatcctggtagagccgccaacaagcacaa 100  Q
    ||||||||||||| ||||| |||   ||  |||||| | |||||||||| ||||||   ||| |||||||||||||| ||||||||||||||||| ||||    
T  576 cttttgcataacttcgtcctactatgctcattaatttcaaagaaatcaaccaaaaggccttgaacttttacaatccttgtagagccgccaacaaggacaa 675  T
Q  101 catcatgaatgttagtcttcactatcccactatcttttatacacttttctacactctccatgcactgctcaaaaagactcttgctgagatcgtcgaaatt 200  Q
    ||||||||| |||| ||||   |||||||||||||  |||||| ||||||||||||||||||||||| | ||||||||||||| ||||||| || || ||    
T  676 catcatgaaagttactcttgtttatcccactatctgctatacagttttctacactctccatgcactggttaaaaagactcttgttgagatcatcaaactt 775  T
Q  201 tgcacgactaatcactgaggagaaat 226  Q
    |||||||||||||   ||||||||||    
T  776 tgcacgactaatcgacgaggagaaat 801  T

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