View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8141_low_1 (Length: 746)
Name: NF8141_low_1
Description: NF8141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8141_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 415 - 738
Target Start/End: Complemental strand, 7949520 - 7949199
Alignment:
| Q |
415 |
acaattacttcagagttttaattatactatttttaagcatctcagtgatatctctatgagttataatataactgcattttacgatctacttaaggtctaa |
514 |
Q |
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| T |
7949520 |
acaattacttctgagttttaattatactatttttaagcatctcagtgatatctct--gagttataatataactgcattttatgatctacttaaggtctaa |
7949423 |
T |
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| Q |
515 |
atgaatattgttaaaattaatttcacttatcattgttgtttaggataaaataactgctataagctaaaagagtttggcagaaatgaaatcagacaccaag |
614 |
Q |
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| T |
7949422 |
atgaatattgttaaaattaatttcatttatcattgttgtttaggataaaataactgctataagctaaaagagtttggcagaaatgaaatcagacaccaag |
7949323 |
T |
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| Q |
615 |
gagagctctcaagggcttcaacccaaaagagttcaagtctaaccgatgttttagaatcgaaccggacatagaactggcgaaacctcagggttatggttca |
714 |
Q |
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| T |
7949322 |
gagagctctcaagggcttcaacctaaaagagttcaagtctaaccgatgttttagaatcgaaccggacatagaactggcgaaacctcagggttatggttca |
7949223 |
T |
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| Q |
715 |
accgcttcaaaccaccaccaaact |
738 |
Q |
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| T |
7949222 |
accgcttcaaaccaccaccaaact |
7949199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 261
Target Start/End: Complemental strand, 7950203 - 7949962
Alignment:
| Q |
20 |
gtataatggtgttttttcacatagatgctacatctattatgactacctactaccattaactgtgacttgataaagccacacaattattagcaacctcttc |
119 |
Q |
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| T |
7950203 |
gtataatggtgttttttcacatagatgctacatctattatgactacctactaccattaactgtgacttgataaagccacacaattattagcaacctcttc |
7950104 |
T |
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| Q |
120 |
atccattaaatggttagcttacttatgagttatgatttgtaattatgtgaaacaaaattgggctaaagaacgtgtagtctcaatctaaaattattggctt |
219 |
Q |
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| T |
7950103 |
atccattaaatggttagcttacttatgagttatgatttgtaattatgtgaaacaagattgggctaaagaacgtgtagtctcaatctaaaattattggctt |
7950004 |
T |
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| Q |
220 |
gtttgtctttgaccatgtatgaaaaattttgtataattagaa |
261 |
Q |
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| T |
7950003 |
gtttgtctttgaccatgtatgaaaaactttgtataattagaa |
7949962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 340 - 412
Target Start/End: Complemental strand, 7949734 - 7949662
Alignment:
| Q |
340 |
gttatttttagtctctgatgtcagcttaatgaatcacgcaaccgtaattttattgggtcatgtatgatgtcag |
412 |
Q |
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| T |
7949734 |
gttatttttagtctctgatgtcagcttaataaatcacgtaactgtgattttattaggtcatgtatgatgtcag |
7949662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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