View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8141_low_4 (Length: 332)

Name: NF8141_low_4
Description: NF8141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8141_low_4
NF8141_low_4
[»] chr2 (5 HSPs)
chr2 (152-260)||(31654729-31654837)
chr2 (263-315)||(31654869-31654921)
chr2 (61-121)||(31654601-31654661)
chr2 (156-207)||(6423810-6423861)
chr2 (44-129)||(735544-735626)
[»] chr4 (2 HSPs)
chr4 (40-153)||(21393968-21394077)
chr4 (63-153)||(39217051-39217141)
[»] chr6 (2 HSPs)
chr6 (61-153)||(32332029-32332121)
chr6 (156-196)||(5493380-5493420)
[»] scaffold0158 (2 HSPs)
scaffold0158 (95-153)||(26886-26945)
scaffold0158 (156-209)||(27026-27079)
[»] chr8 (2 HSPs)
chr8 (156-236)||(9416952-9417036)
chr8 (62-136)||(9416780-9416855)
[»] chr7 (2 HSPs)
chr7 (156-236)||(32456452-32456536)
chr7 (156-209)||(7725964-7726017)
[»] chr5 (1 HSPs)
chr5 (156-209)||(14602959-14603012)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 152 - 260
Target Start/End: Original strand, 31654729 - 31654837
Alignment:
Q  152 catcattagccttcaaccaccattatgaatgaaactcaaccttatctagaagctccacggagtgtgagaattattaaaaagtttacccctttgagtattt 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31654729 catcattagccttcaaccaccattatgaatgaaactcaaccttatctagaagctccacggagtgtgagaattattaaaaagtttacccctttgagtattt 31654828  T
Q  252 ttagtatga 260  Q
    |||||||||    
T  31654829 ttagtatga 31654837  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 263 - 315
Target Start/End: Original strand, 31654869 - 31654921
Alignment:
Q  263 atctttggtttcttgggttttgatcatgtcccctcaaactatatgtttttctt 315  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31654869 atctttggtttcttgggttttcatcatgtcccctcaaactatatgtttttctt 31654921  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 31654601 - 31654661
Alignment:
Q  61 tatatatatattcacacaagcatagacgcttctttagcataagacgtgtcaaagaggacgc 121  Q
    |||||||||||||  |||||||||||||||||| ||||| ||||||| |||||||||||||    
T  31654601 tatatatatattccaacaagcatagacgcttctctagcacaagacgtatcaaagaggacgc 31654661  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 6423861 - 6423810
Alignment:
Q  156 attagccttcaaccaccattatgaatgaaactcaaccttatctagaagctcc 207  Q
    |||||||||||||||||| ||||||||||| | || |||||||| |||||||    
T  6423861 attagccttcaaccaccagtatgaatgaaatttaatcttatctataagctcc 6423810  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 735544 - 735626
Alignment:
Q  44 aagaagcaaaaatggtgtatatatatattcacacaagcataga-cgcttctttagcataagacgtgtcaaagaggacgctcaaaata 129  Q
    ||||||||||||||||    ||||||| ||||||||||||| | ||| ||| ||||| | | |||| ||||||||||||||||||||    
T  735544 aagaagcaaaaatggt----atatataatcacacaagcataaaacgcctctctagcacatggcgtgccaaagaggacgctcaaaata 735626  T

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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 153
Target Start/End: Complemental strand, 21394077 - 21393968
Alignment:
Q  40 ttttaagaagcaaaaatggtgtatatatatattcacacaagcatagacgcttctttagcataagacgtgtcaaagaggacgctcaaaatacagagtttct 139  Q
    ||||||||||||||||||||    |||||||||||||||| || | |||| ||||||||| ||| |||  |||||||||| ||||||||||||||| |||    
T  21394077 ttttaagaagcaaaaatggt----atatatattcacacaaacagacacgcctctttagcacaaggcgtaccaaagaggacactcaaaatacagagtgtct 21393982  T
Q  140 gttaaacaattaca 153  Q
    || ||| |||||||    
T  21393981 gtcaaataattaca 21393968  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 153
Target Start/End: Complemental strand, 39217141 - 39217051
Alignment:
Q  63 tatatatattcacacaagcatagacgcttctttagcataagacgtgtcaaagaggacgctcaaaatacagagtttctgttaaacaattaca 153  Q
    |||||||| |||||||| || |||||| ||| ||| | || || |  |||||| || ||||||||||||||||||||||||| ||||||||    
T  39217141 tatatataatcacacaaacagagacgcctctctagtacaatacataccaaagaagatgctcaaaatacagagtttctgttaagcaattaca 39217051  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 32332029 - 32332121
Alignment:
Q  61 tatatatatattcacacaagcatagacgcttctttagcataagacgtgtcaaagaggacgctcaaaatacagagtttctgttaaacaattaca 153  Q
    |||||||||||| ||||||| ||| |||  ||| || || ||| ||| ||||||||||||||||||||||||||| | |||||||||||||||    
T  32332029 tatatatatatttacacaagtataaacgtctctctaacacaaggcgtatcaaagaggacgctcaaaatacagagtatatgttaaacaattaca 32332121  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 5493420 - 5493380
Alignment:
Q  156 attagccttcaaccaccattatgaatgaaactcaaccttat 196  Q
    |||||||||||||||||| ||| ||||||||| ||||||||    
T  5493420 attagccttcaaccaccaatataaatgaaacttaaccttat 5493380  T

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Target: scaffold0158 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 26886 - 26945
Alignment:
Q  95 tagcataagacgtgtcaaagaggacgctcaaaa-tacagagtttctgttaaacaattaca 153  Q
    ||||| |||||||| |||||||||||||||||| |||| |||||||||||||||||||||    
T  26886 tagcacaagacgtgccaaagaggacgctcaaaaatacaaagtttctgttaaacaattaca 26945  T

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Target: scaffold0158; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 27026 - 27079
Alignment:
Q  156 attagccttcaaccaccattatgaatgaaactcaaccttatctagaagctccac 209  Q
    |||||||||||||||||| ||||||||||||| |||||| || | |||||||||    
T  27026 attagccttcaaccaccagtatgaatgaaacttaaccttttcaataagctccac 27079  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 9416952 - 9417036
Alignment:
Q  156 attagccttcaaccaccattatgaatgaaactcaaccttatctagaagctccac----ggagtgtgagaattattaaaaagttta 236  Q
    |||||||||||||||||| ||||||||||||| |||||| ||   |||||||||    |||||||||||| ||||||||||||||    
T  9416952 attagccttcaaccaccagtatgaatgaaacttaaccttttcagtaagctccacattgggagtgtgagaactattaaaaagttta 9417036  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 9416780 - 9416855
Alignment:
Q  62 atatatatattcacacaagcatagacgcttctttagcataagacgtgtcaaagaggacgctc-aaaatacagagtt 136  Q
    ||||||||| |||||| | ||||||||| ||| ||||| |||||||  |||| ||||||||| |||||||||||||    
T  9416780 atatatatactcacactaacatagacgcctctctagcacaagacgtaccaaataggacgctcaaaaatacagagtt 9416855  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 32456536 - 32456452
Alignment:
Q  156 attagccttcaaccaccattatgaatgaaactcaaccttatctagaagctcc----acggagtgtgagaattattaaaaagttta 236  Q
    |||||||||||||||||| ||||||||||||| |||||||| || || ||||      |||||||||||||||||||||||||||    
T  32456536 attagccttcaaccaccagtatgaatgaaacttaaccttatatataaactccgtattgggagtgtgagaattattaaaaagttta 32456452  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 7725964 - 7726017
Alignment:
Q  156 attagccttcaaccaccattatgaatgaaactcaaccttatctagaagctccac 209  Q
    |||||||||||||||||| ||||||||||| | |||||| || | |||||||||    
T  7725964 attagccttcaaccaccaatatgaatgaaatttaaccttttcaataagctccac 7726017  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 14603012 - 14602959
Alignment:
Q  156 attagccttcaaccaccattatgaatgaaactcaaccttatctagaagctccac 209  Q
    |||||||||||||||||  ||||||||||||| |||||| || | |||||||||    
T  14603012 attagccttcaaccaccgatatgaatgaaacttaaccttttcaataagctccac 14602959  T

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