View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8141_low_7 (Length: 242)
Name: NF8141_low_7
Description: NF8141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8141_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 30470829 - 30470610
Alignment:
| Q |
1 |
ataattacggaatcagaaatggatcatgaactaatgataaccaagttacacctttgttggtgataatgtgatatatagtatcaattgagattggtgccat |
100 |
Q |
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| T |
30470829 |
ataattacggaatcagaaatggatcat-----aatgataaccaagttacacctttgttggtgataatgtgatacatagtatcaattgagattggtgccat |
30470735 |
T |
|
| Q |
101 |
taatatcagtaataaattgtcaataatggagcatagataaaattcttgaacaattaggagcatatattagcaaagataataatggtataacaatgataat |
200 |
Q |
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| T |
30470734 |
tgatatcagtaataaaccgtcagt-atggaccagagatgaaattcttaaacaattaggagcatatattagcaaagataataatggtataacaatgataac |
30470636 |
T |
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| Q |
201 |
gatttcc-aaaatgcaatgccttaat |
225 |
Q |
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||| ||| |||||||||||||||||| |
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| T |
30470635 |
gatctccaaaaatgcaatgccttaat |
30470610 |
T |
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