View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8142_high_4 (Length: 421)

Name: NF8142_high_4
Description: NF8142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8142_high_4
NF8142_high_4
[»] chr6 (5 HSPs)
chr6 (1-415)||(13855524-13855938)
chr6 (112-372)||(13851773-13852032)
chr6 (59-113)||(33303630-33303684)
chr6 (63-112)||(13851711-13851760)
chr6 (81-113)||(9195788-9195820)
[»] chr1 (2 HSPs)
chr1 (59-112)||(34298407-34298460)
chr1 (64-112)||(10572624-10572672)
[»] chr8 (1 HSPs)
chr8 (112-168)||(34897122-34897178)
[»] chr7 (4 HSPs)
chr7 (110-161)||(38143258-38143309)
chr7 (75-113)||(927871-927909)
chr7 (64-112)||(27945017-27945065)
chr7 (69-113)||(30516391-30516435)
[»] chr5 (1 HSPs)
chr5 (63-112)||(22423847-22423896)
[»] chr4 (2 HSPs)
chr4 (75-112)||(43061708-43061745)
chr4 (64-112)||(22440635-22440683)
[»] chr3 (2 HSPs)
chr3 (59-112)||(12674536-12674589)
chr3 (77-113)||(35335590-35335626)
[»] scaffold0122 (1 HSPs)
scaffold0122 (64-104)||(8642-8682)
[»] chr2 (1 HSPs)
chr2 (77-113)||(37497109-37497145)


Alignment Details
Target: chr6 (Bit Score: 387; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 13855524 - 13855938
Alignment:
Q  1 cgtagttatcgaggataattttaagtatacctatgaagaacggatatagacacccgttaccaaacacgacatggaaactgacacatcgacactactaata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13855524 cgtagttatcgaggataattttaagtatacctatgaagaacggatatagacacccgttactaaacacgacatggaaactgacacatcgacactactaata 13855623  T
Q  101 atttgagaaaatgtaattatatgtgtcgatgtccgacacacgtaacccgaggagtgttcgtacttcattgttacttaactataagctagatccaaaattt 200  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13855624 atttgagaaaatgtaattatatgtgtcgatgtccgacacacctaacccgaggagtgttcgtacttcatagttacttaactataagctagatccaaaattt 13855723  T
Q  201 agaaccaaaacagaaagttatgctattgatgttagtctgtcatggtcccttgcccttatgtaaatttgaacaattttaaagttgttgtaaatatgtgtgt 300  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13855724 agaaccaaaacagaaagttatgccattgatgttagtctgtcatggtcccttgcccttatgtaaatttgaacaattttaaagttgttgtatatatgtgtgt 13855823  T
Q  301 atatttcaatcacaagtttagacatcaagttttcaagcaccagttatgattctgaattatgttctaatgattatgctgtgttagaaatgttatatctttt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13855824 atatttcaatcacaagtttagacatcaagttttcaagcaccagttatgattctgaattatgttctaatgattatgctgtgttagaaatgttatatctttt 13855923  T
Q  401 gcacacaggttctgc 415  Q
    ||| ||| |||||||    
T  13855924 gcatacatgttctgc 13855938  T

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Target: chr6; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 112 - 372
Target Start/End: Original strand, 13851773 - 13852032
Alignment:
Q  112 tgtaattatatgtgtcgatgtccgacacacgtaacccgaggagtgttcgtacttcattgttacttaactataagctagatccaaaatttagaaccaaaac 211  Q
    |||||||||||||||||||||| ||||| | ||||| ||||| |||   | |||||| |||||||||||||||||||||||||||||| |||||||||||    
T  13851773 tgtaattatatgtgtcgatgtctgacacgcctaacctgaggaatgtctatgcttcatagttacttaactataagctagatccaaaattaagaaccaaaac 13851872  T
Q  212 agaaagttatgctattgatgttagtctgtcatggtcccttgcccttatgtaaatttgaacaattttaaagttgttgtaaatatgtgtgtatatttcaatc 311  Q
    ||||||||||||  ||||||||||||| ||  ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  13851873 agaaagttatgcctttgatgttagtctatcggggtcccttgcccttatgtaaatttgaa-aattttaaagttgttgtatatatgtgtgtatatttcaatc 13851971  T
Q  312 acaagtttagacatcaagttttcaagcaccagttatgattctgaattatgttctaatgatt 372  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13851972 acaagcttagacatcaagttttcaagcaccagttatgattctgaattatgttctaatgatt 13852032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 33303630 - 33303684
Alignment:
Q  59 accaaacacgacatggaaactgacacatcgacactactaataatttgagaaaatg 113  Q
    |||| |||||| | ||| |||||||||||||||||| ||||||||||| ||||||    
T  33303630 accagacacgatacggacactgacacatcgacactaataataatttgaaaaaatg 33303684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 13851711 - 13851760
Alignment:
Q  63 aacacgacatggaaactgacacatcgacactactaataatttgagaaaat 112  Q
    ||||||||| ||| |||||||| |||||||  ||||||||||||||||||    
T  13851711 aacacgacacggacactgacacgtcgacaccgctaataatttgagaaaat 13851760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 9195820 - 9195788
Alignment:
Q  81 acacatcgacactactaataatttgagaaaatg 113  Q
    ||||||||||||| |||||||||||||||||||    
T  9195820 acacatcgacactcctaataatttgagaaaatg 9195788  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 34298407 - 34298460
Alignment:
Q  59 accaaacacgacatggaaactgacacatcgacactactaataatttgagaaaat 112  Q
    |||| |||||||| ||||||||||||| |||||| |||||||||||||||||||    
T  34298407 accagacacgacacggaaactgacacaccgacaccactaataatttgagaaaat 34298460  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 10572672 - 10572624
Alignment:
Q  64 acacgacatggaaactgacacatcgacactactaataatttgagaaaat 112  Q
    |||||||||| | ||||||||  |||||| |||||||||||||||||||    
T  10572672 acacgacatgaacactgacacgccgacaccactaataatttgagaaaat 10572624  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 34897122 - 34897178
Alignment:
Q  112 tgtaattatatgtgtcgatgtccgacacacgtaacccgaggagtgttcgtacttcat 168  Q
    |||||||||||||||||||||| |||||| ||||  |||||||||| ||| ||||||    
T  34897122 tgtaattatatgtgtcgatgtcggacacatgtaattcgaggagtgtccgtgcttcat 34897178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 38143258 - 38143309
Alignment:
Q  110 aatgtaattatatgtgtcgatgtccgacacacgtaacccgaggagtgttcgt 161  Q
    ||||||||||||||||| | |||| ||||||| ||| |||||||||||||||    
T  38143258 aatgtaattatatgtgttggtgtcagacacacctaatccgaggagtgttcgt 38143309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 927909 - 927871
Alignment:
Q  75 aaactgacacatcgacactactaataatttgagaaaatg 113  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  927909 aaactgacacgtcgacactaataataatttgagaaaatg 927871  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 27945017 - 27945065
Alignment:
Q  64 acacgacatggaaactgacacatcgacactactaataatttgagaaaat 112  Q
    |||||||| ||| ||||||||  |||||| |||||||||||||||||||    
T  27945017 acacgacacggacactgacacgccgacaccactaataatttgagaaaat 27945065  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 30516435 - 30516391
Alignment:
Q  69 acatggaaactgacacatcgacactactaataatttgagaaaatg 113  Q
    ||||||| |||||||| |||||||||  |||||||||||||||||    
T  30516435 acatggacactgacacgtcgacactaacaataatttgagaaaatg 30516391  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 22423896 - 22423847
Alignment:
Q  63 aacacgacatggaaactgacacatcgacactactaataatttgagaaaat 112  Q
    ||||||||| ||| ||||||||   |||||||||||||||||||||||||    
T  22423896 aacacgacacggatactgacaccctgacactactaataatttgagaaaat 22423847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 43061745 - 43061708
Alignment:
Q  75 aaactgacacatcgacactactaataatttgagaaaat 112  Q
    ||||||| |||||||||||| |||||||||||||||||    
T  43061745 aaactgaaacatcgacactagtaataatttgagaaaat 43061708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 22440683 - 22440635
Alignment:
Q  64 acacgacatggaaactgacacatcgacactactaataatttgagaaaat 112  Q
    |||||||||||| ||||| ||||||||||   |||||||||||||||||    
T  22440683 acacgacatggacactgatacatcgacaccgttaataatttgagaaaat 22440635  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 12674589 - 12674536
Alignment:
Q  59 accaaacacgacatggaaactgacacatcgacactactaataatttgagaaaat 112  Q
    |||| |||||||| ||| | ||||||| ||||||| ||||||||||||||||||    
T  12674589 accagacacgacacggacattgacacaccgacactgctaataatttgagaaaat 12674536  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 35335590 - 35335626
Alignment:
Q  77 actgacacatcgacactactaataatttgagaaaatg 113  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  35335590 actgacacatagacactagtaataatttgagaaaatg 35335626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 8642 - 8682
Alignment:
Q  64 acacgacatggaaactgacacatcgacactactaataattt 104  Q
    |||||||||||| |||||||| |||||||| ||||||||||    
T  8642 acacgacatggacactgacacgtcgacacttctaataattt 8682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 37497109 - 37497145
Alignment:
Q  77 actgacacatcgacactactaataatttgagaaaatg 113  Q
    |||||||||||||||||  ||||||||||||||||||    
T  37497109 actgacacatcgacactgataataatttgagaaaatg 37497145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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