View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8142_high_6 (Length: 301)

Name: NF8142_high_6
Description: NF8142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8142_high_6
NF8142_high_6
[»] chr3 (3 HSPs)
chr3 (35-254)||(39164498-39164717)
chr3 (1-36)||(22361019-22361054)
chr3 (1-36)||(22365406-22365441)
[»] chr8 (3 HSPs)
chr8 (1-38)||(30045119-30045156)
chr8 (1-36)||(7162477-7162512)
chr8 (1-36)||(30049524-30049559)
[»] chr4 (2 HSPs)
chr4 (1-36)||(3941379-3941414)
chr4 (1-36)||(3945778-3945813)
[»] chr5 (2 HSPs)
chr5 (3-36)||(196458-196491)
chr5 (3-36)||(200837-200870)
[»] chr2 (1 HSPs)
chr2 (1-36)||(1330569-1330604)
[»] chr7 (2 HSPs)
chr7 (7-36)||(39949623-39949652)
chr7 (7-36)||(39954015-39954044)


Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 35 - 254
Target Start/End: Original strand, 39164498 - 39164717
Alignment:
Q  35 cagtaagagacaaacttggaagtaactcacattctcacaaaatccaatttaccttaatcattcatgactgatacaccgcagacttcttcatgggatgctt 134  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||| | ||    
T  39164498 cagtaagagacaaacttggaagtaactcacattctcacaaaattcaatttaccttaatcattcatgtctgatacaccgcacacttcttcatgggaaggtt 39164597  T
Q  135 gcacacttgacaaataatatttccatgaatattacactttcactttcacttgaaggaactgagaaagagtgactgcaatgccctgcaagaaaaggagggt 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39164598 gcacacttgacaaataatatttccatgaatattacactttcactttcacttgaaggaactgagaaagagtgactgcaatgccctgcaagaaaaggagggt 39164697  T
Q  235 ctaggaagtttcttggggca 254  Q
    ||||||||||||||||||||    
T  39164698 ctaggaagtttcttggggca 39164717  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22361054 - 22361019
Alignment:
Q  1 gtattcagaaaagttttataggtcaattagtcaaca 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  22361054 gtattcagaaaagttttataggtcaattagtcaaca 22361019  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22365441 - 22365406
Alignment:
Q  1 gtattcagaaaagttttataggtcaattagtcaaca 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  22365441 gtattcagaaaagttttataggtcaattagtcaaca 22365406  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30045156 - 30045119
Alignment:
Q  1 gtattcagaaaagttttataggtcaattagtcaacagt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30045156 gtattcagaaaagttttataggtcaattagtcaacagt 30045119  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7162512 - 7162477
Alignment:
Q  1 gtattcagaaaagttttataggtcaattagtcaaca 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  7162512 gtattcagaaaagttttataggtcaattagtcaaca 7162477  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 30049559 - 30049524
Alignment:
Q  1 gtattcagaaaagttttataggtcaattagtcaaca 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  30049559 gtattcagaaaagttttataggtcaattagtcaaca 30049524  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3941414 - 3941379
Alignment:
Q  1 gtattcagaaaagttttataggtcaattagtcaaca 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  3941414 gtattcagaaaagttttataggtcaattagtcaaca 3941379  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3945813 - 3945778
Alignment:
Q  1 gtattcagaaaagttttataggtcaattagtcaaca 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  3945813 gtattcagaaaagttttataggtcaattagtcaaca 3945778  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 196458 - 196491
Alignment:
Q  3 attcagaaaagttttataggtcaattagtcaaca 36  Q
    ||||||||||||||||||||||||||||||||||    
T  196458 attcagaaaagttttataggtcaattagtcaaca 196491  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 200837 - 200870
Alignment:
Q  3 attcagaaaagttttataggtcaattagtcaaca 36  Q
    ||||||||||||||||||||||||||||||||||    
T  200837 attcagaaaagttttataggtcaattagtcaaca 200870  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 1330604 - 1330569
Alignment:
Q  1 gtattcagaaaagttttataggtcaattagtcaaca 36  Q
    ||||||||| ||||||||||||||||||||||||||    
T  1330604 gtattcagacaagttttataggtcaattagtcaaca 1330569  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 39949623 - 39949652
Alignment:
Q  7 agaaaagttttataggtcaattagtcaaca 36  Q
    ||||||||||||||||||||||||||||||    
T  39949623 agaaaagttttataggtcaattagtcaaca 39949652  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 39954015 - 39954044
Alignment:
Q  7 agaaaagttttataggtcaattagtcaaca 36  Q
    ||||||||||||||||||||||||||||||    
T  39954015 agaaaagttttataggtcaattagtcaaca 39954044  T

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