View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8142_high_8 (Length: 286)
Name: NF8142_high_8
Description: NF8142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8142_high_8 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 23 - 254
Target Start/End: Complemental strand, 11785926 - 11785695
Alignment:
| Q |
23 |
acttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctgaacacca |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11785926 |
acttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctgaacacca |
11785827 |
T |
|
| Q |
123 |
acaatagtaaaaacctcagatactccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacagttgcattaggatcatcaacaagaccat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
11785826 |
acaatagtaaaaacctcagatactccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacagttgcatttggatcatcaacaagaccat |
11785727 |
T |
|
| Q |
223 |
gctcttgtgctaccttcagtcttttcatctca |
254 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||| |
|
|
| T |
11785726 |
gctcttgtgctatctttagtcttttcatctca |
11785695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 11789519 - 11789282
Alignment:
| Q |
17 |
aaagccacttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11789519 |
aaagccacttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctga |
11789420 |
T |
|
| Q |
117 |
acaccaacaatagtaaaaacctcagatactccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacagttgcattaggatcatcaacaa |
216 |
Q |
| |
|
| |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||| |
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|
| T |
11789419 |
agaccaaccatagtaaaaacctctgaaactccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacaattgcgtttggatcatcaacaa |
11789320 |
T |
|
| Q |
217 |
gaccatgctcttgtgctaccttcagtcttttcatctca |
254 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
11789319 |
gaccatgctcttgtgctatctttagtcttttcatctca |
11789282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 11801686 - 11801449
Alignment:
| Q |
17 |
aaagccacttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11801686 |
aaagccacttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctga |
11801587 |
T |
|
| Q |
117 |
acaccaacaatagtaaaaacctcagatactccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacagttgcattaggatcatcaacaa |
216 |
Q |
| |
|
| |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||| |
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|
| T |
11801586 |
agaccaaccatagtaaaaacctctgaaactccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacaattgcgtttggatcatcaacaa |
11801487 |
T |
|
| Q |
217 |
gaccatgctcttgtgctaccttcagtcttttcatctca |
254 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
11801486 |
gaccatgctcttgtgctatctttagtcttttcatctca |
11801449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 11678506 - 11678269
Alignment:
| Q |
17 |
aaagccacttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctga |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11678506 |
aaagccactaagaaagcttccaacaccaacaatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctga |
11678407 |
T |
|
| Q |
117 |
acaccaacaatagtaaaaacctcagatactccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacagttgcattaggatcatcaacaa |
216 |
Q |
| |
|
| |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
11678406 |
agaccaaccatagtaaaaacctctgaaactccaaacaaaaagtattgaggaaccaaccaccatatactcattggtacagttgcattaggatcatcaacaa |
11678307 |
T |
|
| Q |
217 |
gaccatgctcttgtgctaccttcagtcttttcatctca |
254 |
Q |
| |
|
||||| |||||||||| || ||||||||||||||| |
|
|
| T |
11678306 |
taccatattcttgtgctatttttagtcttttcatctca |
11678269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 11686785 - 11686548
Alignment:
| Q |
17 |
aaagccacttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctga |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11686785 |
aaagccactaagaaagcttccaacaccaacaatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctga |
11686686 |
T |
|
| Q |
117 |
acaccaacaatagtaaaaacctcagatactccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacagttgcattaggatcatcaacaa |
216 |
Q |
| |
|
| |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11686685 |
agaccaaccatagtaaaaacctctgaaactccaaacaaaaagtattgaggaaccaaccaccatatactcattggtacagttgcattaggatcatcaacaa |
11686586 |
T |
|
| Q |
217 |
gaccatgctcttgtgctaccttcagtcttttcatctca |
254 |
Q |
| |
|
||||| |||||||||| || ||||||||||||||| |
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|
| T |
11686585 |
taccatattcttgtgctatttttagtcttttcatctca |
11686548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 17 - 247
Target Start/End: Complemental strand, 11699691 - 11699461
Alignment:
| Q |
17 |
aaagccacttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11699691 |
aaagccacttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctga |
11699592 |
T |
|
| Q |
117 |
acaccaacaatagtaaaaacctcagatactccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacagttgcattaggatcatcaacaa |
216 |
Q |
| |
|
| |||||| || |||||||||||||| || |||||||||| || ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11699591 |
agaccaaccatggtaaaaacctcagaaacaccaaacaaaacatactgaggaatcaaccaccctatactcattggaacagttgcattaggatcatcaacaa |
11699492 |
T |
|
| Q |
217 |
gaccatgctcttgtgctaccttcagtctttt |
247 |
Q |
| |
|
||||||||||||||||||| || |||||||| |
|
|
| T |
11699491 |
gaccatgctcttgtgctacttttagtctttt |
11699461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 17 - 222
Target Start/End: Complemental strand, 11709144 - 11708939
Alignment:
| Q |
17 |
aaagccacttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11709144 |
aaagccacttagaaagcttccaacaccaacaatactcaaatagagtgccagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctga |
11709045 |
T |
|
| Q |
117 |
acaccaacaatagtaaaaacctcagatactccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacagttgcattaggatcatcaacaa |
216 |
Q |
| |
|
| |||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11709044 |
agaccaaccattgtaaaaacctcagaaactccaaacaaaaagtattgaggaaccaaccaccatatactcattggtacagttgcattaggatcatcaacaa |
11708945 |
T |
|
| Q |
217 |
gaccat |
222 |
Q |
| |
|
|||||| |
|
|
| T |
11708944 |
gaccat |
11708939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 11792826 - 11792725
Alignment:
| Q |
17 |
aaagccacttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11792826 |
aaagccacttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctga |
11792727 |
T |
|
| Q |
117 |
ac |
118 |
Q |
| |
|
|| |
|
|
| T |
11792726 |
ac |
11792725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 21 - 254
Target Start/End: Complemental strand, 20930 - 20697
Alignment:
| Q |
21 |
ccacttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctgaacac |
120 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
20930 |
ccactaagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctgaagac |
20831 |
T |
|
| Q |
121 |
caacaatagtaaaaacctcagatactccaaacaaaaagtattgaggaaccaaccaccatatactcattggaacagttgcattaggatcatcaacaagacc |
220 |
Q |
| |
|
|||| || ||||||||||| || || |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||| |||||| |
|
|
| T |
20830 |
caaccatggtaaaaacctctgaaacaccaaacaaaaagtattgaggaatcaaccaccatatactcattggtacagttgcatttggatcatcatcaagact |
20731 |
T |
|
| Q |
221 |
atgctcttgtgctaccttcagtcttttcatctca |
254 |
Q |
| |
|
|||||||||||||| ||| |||||||| |||||| |
|
|
| T |
20730 |
atgctcttgtgctatctttagtcttttaatctca |
20697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 4807 - 4977
Alignment:
| Q |
17 |
aaagccacttagaaagcttccaacaccaataatactcaaatagagtgcaagtcccatgcttcttagttcatttgggacttgatcatagaaaaattcctga |
116 |
Q |
| |
|
||||| ||| |||||||| ||||| |||| |||||| |||||||| | ||| |||| ||||||| ||||| ||||| ||||||||||||||||| || |
|
|
| T |
4807 |
aaagctactcagaaagctcccaaccccaaaaatacttaaatagagggaaagacccacacttcttaattcatccgggacctgatcatagaaaaattcttgc |
4906 |
T |
|
| Q |
117 |
acaccaacaatagtaaaaacctcagatactccaaacaaaaagtattgaggaaccaaccaccatatactcat |
187 |
Q |
| |
|
| ||| || || ||||| || ||||||||||||||||| | |||||||||| ||||||||| || ||||| |
|
|
| T |
4907 |
agacctaccattgtaaagacatcagatactccaaacaagacatattgaggaatcaaccaccagatgctcat |
4977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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