View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8142_low_11 (Length: 278)

Name: NF8142_low_11
Description: NF8142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8142_low_11
NF8142_low_11
[»] chr4 (12 HSPs)
chr4 (120-278)||(39732734-39732892)
chr4 (120-278)||(5937859-5938017)
chr4 (120-278)||(50523887-50524045)
chr4 (37-112)||(4949694-4949769)
chr4 (9-112)||(4929721-4929818)
chr4 (219-275)||(16203113-16203169)
chr4 (229-276)||(28911614-28911661)
chr4 (212-276)||(8503784-8503848)
chr4 (7-42)||(4949482-4949517)
chr4 (229-268)||(24038117-24038156)
chr4 (229-268)||(24246651-24246690)
chr4 (229-268)||(31431091-31431130)
[»] chr2 (9 HSPs)
chr2 (120-278)||(44002571-44002729)
chr2 (160-276)||(37551521-37551638)
chr2 (167-276)||(19860224-19860333)
chr2 (195-276)||(43694963-43695044)
chr2 (229-268)||(14379771-14379810)
chr2 (229-268)||(31686843-31686882)
chr2 (229-268)||(31786810-31786849)
chr2 (229-268)||(40254455-40254494)
chr2 (229-268)||(44282605-44282644)
[»] chr5 (11 HSPs)
chr5 (120-278)||(19375422-19375580)
chr5 (129-278)||(10900065-10900214)
chr5 (120-278)||(40979344-40979501)
chr5 (231-276)||(2526319-2526364)
chr5 (219-275)||(33387715-33387771)
chr5 (229-276)||(53685-53732)
chr5 (229-268)||(3260894-3260933)
chr5 (229-268)||(14082924-14082963)
chr5 (229-268)||(29542497-29542536)
chr5 (229-268)||(33115067-33115106)
chr5 (229-268)||(42663467-42663506)
[»] chr3 (10 HSPs)
chr3 (120-278)||(30809733-30809891)
chr3 (123-275)||(44610843-44610995)
chr3 (120-278)||(50392836-50392994)
chr3 (167-276)||(45489129-45489238)
chr3 (219-276)||(44328682-44328739)
chr3 (195-276)||(28883689-28883770)
chr3 (229-268)||(47141457-47141496)
chr3 (229-268)||(47697110-47697149)
chr3 (229-268)||(51129070-51129109)
chr3 (230-270)||(40237333-40237373)
[»] scaffold0184 (1 HSPs)
scaffold0184 (120-278)||(9710-9868)
[»] chr1 (17 HSPs)
chr1 (120-278)||(41512068-41512226)
chr1 (120-272)||(24075446-24075598)
chr1 (162-276)||(3850883-3850997)
chr1 (123-276)||(42137719-42137865)
chr1 (186-275)||(1762207-1762297)
chr1 (229-276)||(11829110-11829157)
chr1 (233-276)||(31100484-31100527)
chr1 (195-276)||(27065024-27065105)
chr1 (229-268)||(7593259-7593298)
chr1 (229-268)||(15353339-15353378)
chr1 (229-268)||(26821493-26821532)
chr1 (229-268)||(27000322-27000361)
chr1 (229-268)||(36496107-36496146)
chr1 (229-268)||(38627649-38627688)
chr1 (229-268)||(38843262-38843301)
chr1 (229-268)||(50979291-50979330)
chr1 (229-268)||(51488551-51488590)
[»] chr7 (10 HSPs)
chr7 (124-275)||(19544467-19544618)
chr7 (123-275)||(47085708-47085860)
chr7 (120-272)||(47158248-47158400)
chr7 (124-275)||(298679-298830)
chr7 (188-276)||(32450743-32450831)
chr7 (167-275)||(40233405-40233512)
chr7 (229-276)||(39857110-39857157)
chr7 (232-276)||(2000186-2000230)
chr7 (229-268)||(25341500-25341539)
chr7 (229-268)||(31012458-31012497)
[»] chr8 (7 HSPs)
chr8 (159-278)||(2025476-2025595)
chr8 (125-276)||(7636372-7636522)
chr8 (195-276)||(3590073-3590154)
chr8 (229-268)||(629480-629519)
chr8 (229-268)||(30210505-30210544)
chr8 (229-268)||(30984357-30984396)
chr8 (229-268)||(34774403-34774442)
[»] chr6 (4 HSPs)
chr6 (166-275)||(20838514-20838623)
chr6 (195-276)||(30134146-30134227)
chr6 (231-276)||(4146847-4146892)
chr6 (214-276)||(27825042-27825104)
[»] scaffold0702 (1 HSPs)
scaffold0702 (208-276)||(4582-4650)
[»] scaffold0662 (1 HSPs)
scaffold0662 (208-276)||(3448-3516)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 120 - 278
Target Start/End: Original strand, 39732734 - 39732892
Alignment:
Q  120 gtgtgtttggttcagcttctacatctctcaaaaacatttttggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatc 219  Q
    ||||||||||||||||||||||| |||| |||| || || ||||||||||||| ||||||||||||||||| || |||||| ||||||||||||||||||    
T  39732734 gtgtgtttggttcagcttctacaactcttaaaagcacttctggtagcttcaaaggtgaaaatttgcaattccaacatgtttggttcagcttctcaaaatc 39732833  T
Q  220 aattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagc 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39732834 aattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagc 39732892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 120 - 278
Target Start/End: Complemental strand, 5938017 - 5937859
Alignment:
Q  120 gtgtgtttggttcagcttctacatctctcaaaaacatttttggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatc 219  Q
    ||||||||||||||||||||||| |||| |||| || || |||||||| |||||||||||| ||||||||| |  |||||| ||||||||||||||||||    
T  5938017 gtgtgtttggttcagcttctacacctcttaaaagcacttctggtagctacaaaagtgaaaacttgcaattccagcatgtttggttcagcttctcaaaatc 5937918  T
Q  220 aattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagc 278  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5937917 aattctcatctccaaaagcaattatggatgaagctacaattcctagcttttgagttagc 5937859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 120 - 278
Target Start/End: Complemental strand, 50524045 - 50523887
Alignment:
Q  120 gtgtgtttggttcagcttctacatctctcaaaaacatttttggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatc 219  Q
    ||||||||||||||||||||||| |||  |||| ||||| || |||||||||||||||| | ||||||||  ||||||||| ||||| ||||||||||||    
T  50524045 gtgtgtttggttcagcttctacacctcctaaaagcatttctgatagcttcaaaagtgaacacttgcaatttcaatatgtttggttcaacttctcaaaatc 50523946  T
Q  220 aattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagc 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50523945 aattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagc 50523887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 4949694 - 4949769
Alignment:
Q  37 gttgaaacataccactactcttgtacttgtactcagtttgaaactaaacaacaatctgttcactaaattcctagaa 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  4949694 gttgaaacataccactactcttgtacttgtactcagtttgaaactaaacaacaaactggtcactaaattcctagaa 4949769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 4929721 - 4929818
Alignment:
Q  9 accaacacatatattgctttaaataatggttgaaacataccactactcttgtacttgtactcagtttgaaactaaacaacaatctgttcactaaattcct 108  Q
    |||||||| |||||||||||| ||||||||| |||||| |||| |||      |||||||||||||||||| |||| ||||| ||||||||||||| |||    
T  4929721 accaacacctatattgctttatataatggttcaaacatgccacaact------cttgtactcagtttgaaattaaagaacaaactgttcactaaatccct 4929814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 16203169 - 16203113
Alignment:
Q  219 caattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagtt 275  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  16203169 caattctcttctccaaaagcaattttggttgaagctacaattcctagcttttgagtt 16203113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 28911614 - 28911661
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||    
T  28911614 ctccaaaagcaattgtggatgaagctacaattcctaacttttgagtta 28911661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 276
Target Start/End: Original strand, 8503784 - 8503848
Alignment:
Q  212 tcaaaatcaattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    ||||||| |||||||||||| |||| ||||| | | ||||||||||||||||| |||||| ||||    
T  8503784 tcaaaattaattctcatctctaaaatcaattttagttgaagctacaattcctaacttttgtgtta 8503848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 42
Target Start/End: Original strand, 4949482 - 4949517
Alignment:
Q  7 gtaccaacacatatattgctttaaataatggttgaa 42  Q
    ||||||||||||||||||||||||||||| ||||||    
T  4949482 gtaccaacacatatattgctttaaataattgttgaa 4949517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 24038156 - 24038117
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  24038156 ctccaaaagcaattctagttgaagctacaattcctagctt 24038117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 24246651 - 24246690
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  24246651 ctccaaaagcaattctagttgaagctacaattcctagctt 24246690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 31431130 - 31431091
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  31431130 ctccaaaagcaattctagttgaagctacaattcctagctt 31431091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 120 - 278
Target Start/End: Original strand, 44002571 - 44002729
Alignment:
Q  120 gtgtgtttggttcagcttctacatctctcaaaaacatttttggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatc 219  Q
    ||||||||||||||||||||||| |||| |||| || || ||||||||||||||||||||| ||||||||| || |||||| ||||||||||||||||||    
T  44002571 gtgtgtttggttcagcttctacaactcttaaaagcacttctggtagcttcaaaagtgaaaacttgcaattccaacatgtttggttcagcttctcaaaatc 44002670  T
Q  220 aattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagc 278  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  44002671 aattctcatctctaaaagcaattctggatgaagctacaattcctagcttttgagttagc 44002729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 160 - 276
Target Start/End: Original strand, 37551521 - 37551638
Alignment:
Q  160 tggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagctt-ctcaaaatcaattctcatctccaaaagcaattctggatgaagctacaa 258  Q
    ||||||||||||||||||||| | | ||||| ||||||||| ||| | ||| |||||||||||||||||| ||||||||||||||||| |||||||||||    
T  37551521 tggtagcttcaaaagtgaaaactagtaattccaatatgtttggtttaactttctcaaaatcaattctcatatccaaaagcaattctggttgaagctacaa 37551620  T
Q  259 ttcctagcttttgagtta 276  Q
    ||||||| || |||||||    
T  37551621 ttcctagtttctgagtta 37551638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 276
Target Start/End: Original strand, 19860224 - 19860333
Alignment:
Q  167 ttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatcaattctcatctccaaaagcaattctggatgaagctacaattcctagc 266  Q
    |||||||||||||| |  | |||| || |||||| ||| | |||||||||||||||||||||||| |||||||||| | | ||||| |||||||| || |    
T  19860224 ttcaaaagtgaaaactaacgattccaacatgtttggtttaacttctcaaaatcaattctcatctctaaaagcaattttaggtgaagttacaattcttaac 19860323  T
Q  267 ttttgagtta 276  Q
    ||||||||||    
T  19860324 ttttgagtta 19860333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 43694963 - 43695044
Alignment:
Q  195 atgttttgttcagcttctcaaaatcaattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    |||||| |||||||||  ||||| |||||||| |||  |||| ||||||||| ||||||||||||||||| |||||||||||    
T  43694963 atgtttggttcagctttacaaaagcaattctcttctgtaaaaacaattctggctgaagctacaattcctaacttttgagtta 43695044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 14379771 - 14379810
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  14379771 ctccaaaagcaattctagttgaagctacaattcctagctt 14379810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 31686882 - 31686843
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  31686882 ctccaaaagcaattctagttgaagctacaattcctagctt 31686843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 31786810 - 31786849
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  31786810 ctccaaaagcaattctagttgaagctacaattcctagctt 31786849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 40254455 - 40254494
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  40254455 ctccaaaagcaattctagttgaagctacaattcctagctt 40254494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 44282605 - 44282644
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  44282605 ctccaaaagcaattctagttgaagctacaattcctagctt 44282644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 120 - 278
Target Start/End: Complemental strand, 19375580 - 19375422
Alignment:
Q  120 gtgtgtttggttcagcttctacatctctcaaaaacatttttggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatc 219  Q
    ||||||||||||||||||||||| |||| ||||||| || ||||||||||||||||||||| ||||||||| ||  ||||| ||| ||||||||||||||    
T  19375580 gtgtgtttggttcagcttctacacctcttaaaaacacttctggtagcttcaaaagtgaaaacttgcaattccaacgtgtttggttaagcttctcaaaatc 19375481  T
Q  220 aattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagc 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19375480 aattctcatctccaaaagcaattctggatgaagctacaattcctaacttttgagttagc 19375422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 129 - 278
Target Start/End: Original strand, 10900065 - 10900214
Alignment:
Q  129 gttcagcttctacatctctcaaaaacatttttggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatcaattctcat 228  Q
    ||||||||| |||| |||| ||||||| || ||||| ||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||    
T  10900065 gttcagcttttacacctcttaaaaacacttctggtaacttcaaaagtgaaaatttgcaattccaacatgtttggttcagcttctcaaaatcaattctcat 10900164  T
Q  229 ctccaaaagcaattctggatgaagctacaattcctagcttttgagttagc 278  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  10900165 ctccaaaagcaattctggatgaagctacaattcctaacttttgagttagc 10900214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 120 - 278
Target Start/End: Original strand, 40979344 - 40979501
Alignment:
Q  120 gtgtgtttggttcagcttctacatctctcaaaaacatttttggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatc 219  Q
    |||||||| |||||||||||||| |||| |||| || || || |||||||||||||||||| ||||||||| || |||||| ||||||||| ||||||||    
T  40979344 gtgtgtttagttcagcttctacacctcttaaaagcacttatg-tagcttcaaaagtgaaaacttgcaattccaacatgtttggttcagcttatcaaaatc 40979442  T
Q  220 aattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagc 278  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40979443 aattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagc 40979501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 2526319 - 2526364
Alignment:
Q  231 ccaaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2526319 ccaaaagcaattctggatgaagctacaattcctagcttttgagtta 2526364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 33387771 - 33387715
Alignment:
Q  219 caattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagtt 275  Q
    ||||| || ||||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  33387771 caattttcttctccaaaaacaattctggttgaagctacaattcctaacttttgagtt 33387715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 53732 - 53685
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    |||||||||||||| ||| |||||||||||||||||||||||| ||||    
T  53732 ctccaaaagcaattatggttgaagctacaattcctagcttttgggtta 53685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 3260933 - 3260894
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  3260933 ctccaaaagcaattctagttgaagctacaattcctagctt 3260894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 14082924 - 14082963
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  14082924 ctccaaaagcaattctagttgaagctacaattcctagctt 14082963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 29542536 - 29542497
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  29542536 ctccaaaagcaattctagttgaagctacaattcctagctt 29542497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 33115067 - 33115106
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  33115067 ctccaaaagcaattctagttgaagctacaattcctagctt 33115106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 42663467 - 42663506
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  42663467 ctccaaaagcaattctagttgaagctacaattcctagctt 42663506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 120 - 278
Target Start/End: Original strand, 30809733 - 30809891
Alignment:
Q  120 gtgtgtttggttcagcttctacatctctcaaaaacatttttggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatc 219  Q
    ||||| |||||||||||| |||| ||||||||| || || || |||||||||||||||||| || |||||| || |||||| ||||||||||||||||||    
T  30809733 gtgtgcttggttcagcttttacacctctcaaaagcacttctgatagcttcaaaagtgaaaacttccaattccaacatgtttggttcagcttctcaaaatc 30809832  T
Q  220 aattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagc 278  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30809833 aactctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagc 30809891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 123 - 275
Target Start/End: Complemental strand, 44610995 - 44610843
Alignment:
Q  123 tgtttggttcagcttctacatctctcaaaaacatttttggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatcaat 222  Q
    ||||||||||||||||||||||  |||||| || || |||||| |||||||||||||| | ||||||| || |||||| |||||||||| ||||||||||    
T  44610995 tgtttggttcagcttctacatcattcaaaagcaattctggtagtttcaaaagtgaaaactagcaattccaacatgtttggttcagcttcacaaaatcaat 44610896  T
Q  223 tctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagtt 275  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  44610895 tctcatctccaaaagcaattctggttgaagctacaatttctagcttttgagtt 44610843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 120 - 278
Target Start/End: Complemental strand, 50392994 - 50392836
Alignment:
Q  120 gtgtgtttggttcagcttctacatctctcaaaaacatttttggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatc 219  Q
    ||||||||| |||| |||||| | |||| |||| || || ||||||||| ||||||||||| |||||||||  | |||||| ||||| ||||||||||||    
T  50392994 gtgtgtttgattcaacttctatacctcttaaaagcacttctggtagctttaaaagtgaaaacttgcaattccgacatgtttggttcaacttctcaaaatc 50392895  T
Q  220 aattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagc 278  Q
    |||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||    
T  50392894 aattctcatctccaaaagtaattctggatgaaactacaattcctagcttttaagttagc 50392836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 167 - 276
Target Start/End: Complemental strand, 45489238 - 45489129
Alignment:
Q  167 ttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatcaattctcatctccaaaagcaattctggatgaagctacaattcctagc 266  Q
    |||||||||||||| |  | |||| || |||||| ||| | |||||||||||||||||||||||| |||||||||||| | ||||||||||||||||| |    
T  45489238 ttcaaaagtgaaaactaacgattccaacatgtttggtttaacttctcaaaatcaattctcatctctaaaagcaattctaggtgaagctacaattcctaac 45489139  T
Q  267 ttttgagtta 276  Q
    ||| ||||||    
T  45489138 tttggagtta 45489129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 276
Target Start/End: Original strand, 44328682 - 44328739
Alignment:
Q  219 caattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    |||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  44328682 caattctcttctccaaaagcaattttggctgaagctacaattcctagcttttgagtta 44328739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 28883689 - 28883770
Alignment:
Q  195 atgttttgttcagcttctcaaaatcaattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    |||||| |||||||||  ||||| |||||||| | |  |||||||||||||  |||||||||||||| ||||||||||||||    
T  28883689 atgtttggttcagctttacaaaaacaattctcttttgtaaaagcaattctgactgaagctacaattcttagcttttgagtta 28883770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 47141496 - 47141457
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  47141496 ctccaaaagcaattctagttgaagctacaattcctagctt 47141457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 47697110 - 47697149
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  47697110 ctccaaaagcaattctagttgaagctacaattcctagctt 47697149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 51129109 - 51129070
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  51129109 ctccaaaagcaattctagttgaagctacaattcctagctt 51129070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 40237333 - 40237373
Alignment:
Q  230 tccaaaagcaattctggatgaagctacaattcctagctttt 270  Q
    ||||||||||||| ||||||||| ||||||||||| |||||    
T  40237333 tccaaaagcaattttggatgaagttacaattcctaactttt 40237373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 120 - 278
Target Start/End: Complemental strand, 9868 - 9710
Alignment:
Q  120 gtgtgtttggttcagcttctacatctctcaaaaacatttttggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatc 219  Q
    ||||||||||||||||||||| | || |||||| ||||| |||||| |||||||||||||| || |||||| || |||||| ||||||||||||||||||    
T  9868 gtgtgtttggttcagcttctatacctttcaaaagcatttctggtagtttcaaaagtgaaaacttacaattccaacatgtttggttcagcttctcaaaatc 9769  T
Q  220 aattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagc 278  Q
    ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||    
T  9768 aattctcatcttcaaaaacaattctggatgaagctacaattcctaacttttgagttagc 9710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 120 - 278
Target Start/End: Original strand, 41512068 - 41512226
Alignment:
Q  120 gtgtgtttggttcagcttctacatctctcaaaaacatttttggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatc 219  Q
    |||||||||||||||||||||||  ||| ||||||| |||| ||||||||||||||||||| ||||||||| || || ||| ||||||||||||||||||    
T  41512068 gtgtgtttggttcagcttctacacatcttaaaaacacttttcgtagcttcaaaagtgaaaacttgcaattccaacatctttggttcagcttctcaaaatc 41512167  T
Q  220 aattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagttagc 278  Q
    |||||||||||||||||  | || | ||||||||||||||||||| |||||||||||||    
T  41512168 aattctcatctccaaaaatatttttcgatgaagctacaattcctaacttttgagttagc 41512226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 120 - 272
Target Start/End: Original strand, 24075446 - 24075598
Alignment:
Q  120 gtgtgtttggttcagcttctacatctctcaaaaacatttttggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatc 219  Q
    |||||||||||||||||||||||||| ||||||  |||| |||||| || ||||||||||| ||||||||  || |||||| ||||| ||| | ||||||    
T  24075446 gtgtgtttggttcagcttctacatctttcaaaagtatttctggtagttttaaaagtgaaaacttgcaatttcaacatgtttggttcaactttttaaaatc 24075545  T
Q  220 aattctcatctccaaaagcaattctggatgaagctacaattcctagcttttga 272  Q
     |||||||||| |||||| |||||||||| ||||||||||||||| |||||||    
T  24075546 gattctcatcttcaaaagtaattctggataaagctacaattcctaacttttga 24075598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 162 - 276
Target Start/End: Complemental strand, 3850997 - 3850883
Alignment:
Q  162 gtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatcaattctcatctccaaaagcaattctggatgaagctacaattc 261  Q
    |||||||||||||| |||| ||||||||  ||  ||||| |||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||     
T  3850997 gtagcttcaaaagtaaaaacttgcaatttcaacctgtttggttcagcttctcaaaatcaattctcatctccaaaggcaattatgaatgaagctacaattt 3850898  T
Q  262 ctagcttttgagtta 276  Q
    |||||||||||||||    
T  3850897 ctagcttttgagtta 3850883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 123 - 276
Target Start/End: Complemental strand, 42137865 - 42137719
Alignment:
Q  123 tgtttggttcagcttctacatctctcaaaaacatttttggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatcaat 222  Q
    |||||||||||||||||||| |  | |||| || ||| | |||||||||||||||||||| ||||||| || || ||| ||| || ||||||||||||||    
T  42137865 tgtttggttcagcttctacaccctttaaaagcactttcgatagcttcaaaagtgaaaattagcaattccaacatatttggtttagtttctcaaaatcaat 42137766  T
Q  223 tctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    |||||||||||||||||       ||||| ||||||||||||||||||||||||    
T  42137765 tctcatctccaaaagca-------atgaatctacaattcctagcttttgagtta 42137719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 1762207 - 1762297
Alignment:
Q  186 aattctaatatgttttgtt-cagcttctcaaaatcaattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagtt 275  Q
    ||||||||||| ||| ||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||| ||||| ||||    
T  1762207 aattctaatatatttggtttcagcttctcaaaatcaattttaatctccaaaagcaattctggttgaagctacaattcctaacttttaagtt 1762297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 11829110 - 11829157
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    |||||||||||||||||||||||| || |||||||| |||||||||||    
T  11829110 ctccaaaagcaattctggatgaaggtataattcctaacttttgagtta 11829157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 276
Target Start/End: Complemental strand, 31100527 - 31100484
Alignment:
Q  233 aaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    ||||| |||||||| |||||||||||||||||||||||||||||    
T  31100527 aaaagtaattctggctgaagctacaattcctagcttttgagtta 31100484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 27065024 - 27065105
Alignment:
Q  195 atgttttgttcagcttctcaaaatcaattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    |||||| |||||||||   |||| |||||||| ||| ||||||| ||| ||  |||||||||||||||||| ||||||||||    
T  27065024 atgtttggttcagctttataaaagcaattctcttcttcaaaagcgattttgactgaagctacaattcctagtttttgagtta 27065105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 7593298 - 7593259
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  7593298 ctccaaaagcaattctagttgaagctacaattcctagctt 7593259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 15353339 - 15353378
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  15353339 ctccaaaagcaattctagttgaagctacaattcctagctt 15353378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 26821493 - 26821532
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  26821493 ctccaaaagcaattctagttgaagctacaattcctagctt 26821532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 27000361 - 27000322
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  27000361 ctccaaaagcaattctagttgaagctacaattcctagctt 27000322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 36496146 - 36496107
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  36496146 ctccaaaagcaattctagttgaagctacaattcctagctt 36496107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 38627649 - 38627688
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  38627649 ctccaaaagcaattctagttgaagctacaattcctagctt 38627688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 38843262 - 38843301
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  38843262 ctccaaaagcaattctagttgaagctacaattcctagctt 38843301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 50979330 - 50979291
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  50979330 ctccaaaagcaattctagttgaagctacaattcctagctt 50979291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 51488590 - 51488551
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  51488590 ctccaaaagcaattctagttgaagctacaattcctagctt 51488551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 124 - 275
Target Start/End: Original strand, 19544467 - 19544618
Alignment:
Q  124 gtttggttcagcttctacatctctcaaaaacatttttggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatcaatt 223  Q
    ||||| |||||||||||||||  |||||| || || ||||||||||||||||||||| | ||||||| || |||||| ||||||||||||||||||||||    
T  19544467 gtttgtttcagcttctacatccttcaaaagcaattctggtagcttcaaaagtgaaaactagcaattccaacatgtttggttcagcttctcaaaatcaatt 19544566  T
Q  224 ctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagtt 275  Q
    |||||||||||||| |||| ||| |||||||||||||| |||||||||||||    
T  19544567 ctcatctccaaaagtaattatggttgaagctacaattcatagcttttgagtt 19544618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 123 - 275
Target Start/End: Complemental strand, 47085860 - 47085708
Alignment:
Q  123 tgtttggttcagcttctacatctctcaaaaacatttttggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatcaat 222  Q
    |||||| |||||||||||||||  |||||| || |||||||||||||||||||||||||| ||||||  || ||||||  || |||||||||||||||||    
T  47085860 tgtttgtttcagcttctacatccttcaaaagcaattttggtagcttcaaaagtgaaaattagcaatttcaacatgtttgatttagcttctcaaaatcaat 47085761  T
Q  223 tctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagtt 275  Q
    ||| ||||| |||||||||| ||| ||||| ||||||||||| ||||||||||    
T  47085760 tctaatctctaaaagcaattttggttgaagttacaattcctaacttttgagtt 47085708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 120 - 272
Target Start/End: Complemental strand, 47158400 - 47158248
Alignment:
Q  120 gtgtgtttggttcagcttctacatctctcaaaaacatttttggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatc 219  Q
    ||||||||||||||||||||||| |  | |||| ||||||||||||| ||||||||||||| | ||||||| || | |||| ||| | ||||||||||||    
T  47158400 gtgtgtttggttcagcttctacaccatttaaaagcatttttggtagcatcaaaagtgaaaactagcaattccaacaggtttggtttaacttctcaaaatc 47158301  T
Q  220 aattctcatctccaaaagcaattctggatgaagctacaattcctagcttttga 272  Q
    ||||||||||||||||||||||| ||| |||||||||||||| || |||||||    
T  47158300 aattctcatctccaaaagcaattttgggtgaagctacaattcataacttttga 47158248  T

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Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 124 - 275
Target Start/End: Complemental strand, 298830 - 298679
Alignment:
Q  124 gtttggttcagcttctacatctctcaaaaacatttttggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatcaatt 223  Q
    ||||||||||||||||||  |  |||||| || || ||||||||| ||||||||||||| ||||||  ||||||||| ||||||||||||||||||||||    
T  298830 gtttggttcagcttctacggccttcaaaagcaattctggtagctttaaaagtgaaaattagcaatttcaatatgtttggttcagcttctcaaaatcaatt 298731  T
Q  224 ctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagtt 275  Q
    ||||| || |||||||||| ||  |||||||||||||| |||||||| ||||    
T  298730 ctcatttctaaaagcaattttgattgaagctacaattcttagcttttaagtt 298679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 276
Target Start/End: Original strand, 32450743 - 32450831
Alignment:
Q  188 ttctaatatgttttgttcagcttctcaaaatcaattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    |||| |||||||| ||||| |||  ||||| |||||||| ||||||||||||||| ||| ||||||||||||| ||| |||||||||||    
T  32450743 ttcttatatgtttggttcaactttacaaaagcaattctcttctccaaaagcaattttggttgaagctacaatttctaacttttgagtta 32450831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 167 - 275
Target Start/End: Original strand, 40233405 - 40233512
Alignment:
Q  167 ttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatcaattctcatctccaaaagcaattctggatgaagctacaattcctagc 266  Q
    |||||||||||||| |  ||||| |||||| ||| ||||| ||||||||||| ||||||||||| ||||||||||| ||| ||||| || ||||| || |    
T  40233405 ttcaaaagtgaaaactaccaattttaatatattt-gttcaacttctcaaaattaattctcatcttcaaaagcaattttggttgaagttataattcttaac 40233503  T
Q  267 ttttgagtt 275  Q
    |||||||||    
T  40233504 ttttgagtt 40233512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 276
Target Start/End: Original strand, 39857110 - 39857157
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  39857110 ctccaaaagtaattctggatgaagctacaattcatagcttttgagtta 39857157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 2000230 - 2000186
Alignment:
Q  232 caaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    ||||| ||||||||| ||||||||||||||||| |||||||||||    
T  2000230 caaaaacaattctggttgaagctacaattcctaccttttgagtta 2000186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 25341539 - 25341500
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  25341539 ctccaaaagcaattctagttgaagctacaattcctagctt 25341500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 31012497 - 31012458
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  31012497 ctccaaaagcaattctagttgaagctacaattcctagctt 31012458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 159 - 278
Target Start/End: Original strand, 2025476 - 2025595
Alignment:
Q  159 ttggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatcaattctcatctccaaaagcaattctggatgaagctacaa 258  Q
    ||||| ||| |||||||||||| ||||||||  || |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2025476 ttggtggctccaaaagtgaaaacttgcaatttcaacatgtttggttcagcttctcaaaatcaattctcatctccaaaagcaattttggatgaagctacaa 2025575  T
Q  259 ttcctagcttttgagttagc 278  Q
    ||||||| ||||||||||||    
T  2025576 ttcctagtttttgagttagc 2025595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 125 - 276
Target Start/End: Original strand, 7636372 - 7636522
Alignment:
Q  125 tttggttcagcttctacatctctcaaaaacatttttggtagcttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatcaattc 224  Q
    ||||||||||||||||||||  | |||| || |||| ||||| ||||||||||||| | ||||||| || ||||||  ||||| || |||||||||||||    
T  7636372 tttggttcagcttctacatcgtt-aaaagcacttttagtagcctcaaaagtgaaaactagcaattccaacatgtttgattcagattttcaaaatcaattc 7636470  T
Q  225 tcatctccaaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    ||||||| |||||||||||| | |||||||| ||||||||| ||||||||||    
T  7636471 tcatctctaaaagcaattcttgttgaagctataattcctagattttgagtta 7636522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 3590073 - 3590154
Alignment:
Q  195 atgttttgttcagcttctcaaaatcaattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    |||||| |||||||||  || || |||||||| ||||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  3590073 atgtttggttcagctttacagaagcaattctcttctccaaaaacaattctggttgaagctacaattcctaacttttgagtta 3590154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 629519 - 629480
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  629519 ctccaaaagcaattctagttgaagctacaattcctagctt 629480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 30210505 - 30210544
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  30210505 ctccaaaagcaattctagttgaagctacaattcctagctt 30210544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 30984396 - 30984357
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  30984396 ctccaaaagcaattctagttgaagctacaattcctagctt 30984357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 229 - 268
Target Start/End: Complemental strand, 34774442 - 34774403
Alignment:
Q  229 ctccaaaagcaattctggatgaagctacaattcctagctt 268  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  34774442 ctccaaaagcaattctagttgaagctacaattcctagctt 34774403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 166 - 275
Target Start/End: Complemental strand, 20838623 - 20838514
Alignment:
Q  166 cttcaaaagtgaaaatttgcaattctaatatgttttgttcagcttctcaaaatcaattctcatctccaaaagcaattctggatgaagctacaattcctag 265  Q
    ||||||||||||||| | ||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||     
T  20838623 cttcaaaagtgaaaactagcaattccaacatgtttggttcagcttctcaaaatcaattctcatctccaaaagcaattctggttgaagctacaaatcctaa 20838524  T
Q  266 cttttgagtt 275  Q
    ||||||||||    
T  20838523 cttttgagtt 20838514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 30134146 - 30134227
Alignment:
Q  195 atgttttgttcagcttctcaaaatcaattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    |||||| |||||||||  ||||| |||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||    
T  30134146 atgtttggttcagctttacaaaagcaattctcttctccaaaagcaattctggttgaagctacaatttctagcttttgagtta 30134227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 4146847 - 4146892
Alignment:
Q  231 ccaaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  4146847 ccaaaagcaattctggatgaagctacaattcctagcttttgagtta 4146892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 214 - 276
Target Start/End: Original strand, 27825042 - 27825104
Alignment:
Q  214 aaaatcaattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    |||| |||||||| ||||||||||||||| ||| ||||||||||||||||| ||||| |||||    
T  27825042 aaaagcaattctcttctccaaaagcaattatggttgaagctacaattcctaacttttcagtta 27825104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 208 - 276
Target Start/End: Complemental strand, 4650 - 4582
Alignment:
Q  208 cttctcaaaatcaattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    |||||||||||||||||| | ||||||||| |||||||  |||||||||||||||||||||||||||||    
T  4650 cttctcaaaatcaattcttagctccaaaagtaattctgattgaagctacaattcctagcttttgagtta 4582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 208 - 276
Target Start/End: Original strand, 3448 - 3516
Alignment:
Q  208 cttctcaaaatcaattctcatctccaaaagcaattctggatgaagctacaattcctagcttttgagtta 276  Q
    |||||||||||||||||| | ||||||||| |||||||  |||||||||||||||||||||||||||||    
T  3448 cttctcaaaatcaattcttagctccaaaagtaattctgattgaagctacaattcctagcttttgagtta 3516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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