View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8142_low_13 (Length: 244)
Name: NF8142_low_13
Description: NF8142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8142_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 3 - 233
Target Start/End: Complemental strand, 32483123 - 32482893
Alignment:
| Q |
3 |
ggagaagaagataactgttgttgacgttcacggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaagccacgactcttacaac |
102 |
Q |
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| T |
32483123 |
ggagaagaagataactgttgttgacgttcacggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaaaccacgactcttacaac |
32483024 |
T |
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| Q |
103 |
aagttctacatctcatgtgaggacaatctttcttagcttggttaccacaatcttgacaacttatcccttcagctgaagaagaagacctcatcgccatagt |
202 |
Q |
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| T |
32483023 |
aagttctacatctcatgtgaggacaatctttcttagcttggttaccacaatcttgacaacttatcccttcagctgaagaagaagacctcatcgccatagt |
32482924 |
T |
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| Q |
203 |
aaacgccgccgatctcgacgacgattgatgt |
233 |
Q |
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| T |
32482923 |
aaacgccgccgatctcgacgacgattgatgt |
32482893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 38 - 166
Target Start/End: Complemental strand, 8102004 - 8101876
Alignment:
| Q |
38 |
tctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaagccacgactcttacaacaagttctacatctcatgtgaggacaatctttctta |
137 |
Q |
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| T |
8102004 |
tctagcagcaggaacccaagtactcttaacatgagtttgacaatcaaaacctctactcttacaacaagttctacatctcatatgaggacaatctttctta |
8101905 |
T |
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| Q |
138 |
gcttggttaccacaatcttgacaacttat |
166 |
Q |
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| T |
8101904 |
gcttgattcccacaatcttgacaacttat |
8101876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 7418510 - 7418652
Alignment:
| Q |
18 |
tgttgttgacgttcacggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaagccacgactcttacaacaagttctacatctca |
117 |
Q |
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||||| || ||||| |||||| ||| ||| ||||||||||| ||||| |||||||||||||||||||| || |||||||| ||||||||||||||||| | |
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| T |
7418510 |
tgttgctgccgttcgcggcgtttagcagctggaacccaagtacttttcacatgagtttgacactgaaaccctcgactcttgcaacaagttctacatctaa |
7418609 |
T |
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| Q |
118 |
tgtgaggacaatctttcttagcttggttaccacaatcttgaca |
160 |
Q |
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| T |
7418610 |
gatgtggacaatctttcttagcttggttaccacaatcttgaca |
7418652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 52767556 - 52767699
Alignment:
| Q |
18 |
tgttgttgacgttcacggcgtctagaagcaggaacccaagtgcttttaacatgagtttgacactgaaagccacgactcttacaacaagttctacatctca |
117 |
Q |
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|||||||| |||||||||||| ||| ||| ||||||||||| || |||||||| |||||||||||||| || ||||| |||||||||||||| ||||| | |
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| T |
52767556 |
tgttgttgtcgttcacggcgtttagcagcgggaacccaagtactcttaacatgtgtttgacactgaaaccctcgacttttacaacaagttctgcatctta |
52767655 |
T |
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| Q |
118 |
tgtgaggacaatctttcttagcttggttaccacaatcttgacaa |
161 |
Q |
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| T |
52767656 |
gatgtatacaatctttctttgcttggttaccacagtcctgacaa |
52767699 |
T |
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