View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8142_low_2 (Length: 568)
Name: NF8142_low_2
Description: NF8142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8142_low_2 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 130; Significance: 4e-67; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 167 - 391
Target Start/End: Complemental strand, 923811 - 923592
Alignment:
| Q |
167 |
atctcaacgcggaaaaatcaattataaaggttattattagaacacgtgtccatgtgtctgaaacttagttcagttgcattcatttctaaactctaaaaag |
266 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||| || | |||||||||||||||||||||||||| |
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| T |
923811 |
atctcaacgcagaaaaatcaattataaaagttattattagaacacatgtccatgtgtttgaaacttagatctgctgcattcatttctaaactctaaaaag |
923712 |
T |
|
| Q |
267 |
acaccatttttctatctaaactcttaaagaaatctnnnnnnncaccattttttcaatcggaactcttaaaagaagaaaaacatatgattagagacacact |
366 |
Q |
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|||| |||||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
923711 |
acactatttttctatctaaactcttaaagaaatctaaaaagacacca-tttttcaatccaaactctt-aaagaagaaaaacatatgattagagacacact |
923614 |
T |
|
| Q |
367 |
ttaaattaatagttattgaaacata |
391 |
Q |
| |
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|||| |||||| ||||||||||| |
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| T |
923613 |
ttaa---aatagtgattgaaacata |
923592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 411 - 568
Target Start/End: Original strand, 14455449 - 14455607
Alignment:
| Q |
411 |
tatgaccacatataggcttcatttataaactttgacagcaaagcatgttcatatataatgaaaatggtttcagctacacaaagtgacatacatgtgcaga |
510 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
14455449 |
tatgaccacatatagatttcatttataaactttgacagaaaagcatggtcatatataatgaaaatggttttagctacacaaagtgacatacatgtgcata |
14455548 |
T |
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| Q |
511 |
attatatatttttagagtattccttttgtgtac--tataatactatagcagctctttggt |
568 |
Q |
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| T |
14455549 |
attttatatttttagagta-tccttctttgtactatataatactatagcagcactttggt |
14455607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 22996517 - 22996457
Alignment:
| Q |
14 |
atgaaatagagctaactgttgatgtgtaagttattaataatgaataaatccaaataacttatt |
76 |
Q |
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| T |
22996517 |
atgaaatagagctatctattgatgt--aagttattaataatgaataaatccaaataacttatt |
22996457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 177 - 294
Target Start/End: Original strand, 2191701 - 2191819
Alignment:
| Q |
177 |
ggaaaaatcaattataaa-ggttattattagaacacgtgtccatgtgtctgaaacttagttcagttgcattcatttctaaactctaaaaagacaccattt |
275 |
Q |
| |
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|||||||||||||| ||| ||||| ||| |||| || ||| |||||| ||||||||| |||||||||||||||||||| |||| || |||||| ||| |
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| T |
2191701 |
ggaaaaatcaattacaaaaggttagtatcagaatacatgtatatgtgtttgaaacttatatcagttgcattcatttctaagctcttcaacgacacctttt |
2191800 |
T |
|
| Q |
276 |
ttctatctaaactcttaaa |
294 |
Q |
| |
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|||||| ||| |||||||| |
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| T |
2191801 |
ttctatataagctcttaaa |
2191819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 121; Significance: 1e-61; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 411 - 568
Target Start/End: Original strand, 34641 - 34800
Alignment:
| Q |
411 |
tatgaccacatataggcttcatttataaactttgacagcaaagcatgttcatatataatgaaaatggtttcagctacacaaagtgacatacatgtgcaga |
510 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
34641 |
tatgaccacatatagatttcatttataaactttgacagcaaagcatggtcatatataatgaaaatggttttagctacacaaagtgacatacatgtgcata |
34740 |
T |
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| Q |
511 |
attatatatttttagagtattccttttgtgtac--tataatactatagcagctctttggt |
568 |
Q |
| |
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||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
34741 |
attatatatttttagagtattccttctgtgtactatataatactatagcagcactttggt |
34800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 411 - 547
Target Start/End: Original strand, 41308 - 41447
Alignment:
| Q |
411 |
tatgaccacatataggcttcatttataaactttgacagcaaagcatgttca---tatataatgaaaatggtttcagctacacaaagtgacatacatgtgc |
507 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41308 |
tatgaccacatatagatttcatttataaactttgacagcaaagcatggtcgacgtatataatgaaaatggttttagctacacaaagtgacatacatgtgc |
41407 |
T |
|
| Q |
508 |
agaattatatatttttagagtattccttttgtgtactata |
547 |
Q |
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| T |
41408 |
ataattatatttttttagagtattccttctttgtactata |
41447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 160 - 457
Target Start/End: Original strand, 46833076 - 46833357
Alignment:
| Q |
160 |
aaataaaatctcaacgcggaaaaatcaattataaaggttat---tattagaacacgtgtccatgtgtctgaaacttagttcagttgcattcatttctaaa |
256 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||||||| | ||||||||| | |||||||||| ||| ||||||||||| |||| |
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| T |
46833076 |
aaataaaatctcaacacggaaaaatcaattataaaggttataattattagaaaatatgtccatgtatttgaaacttagatcaactgcattcatttttaaa |
46833175 |
T |
|
| Q |
257 |
ctctaaaaagacaccatttttctatctaaactcttaaagaaatctnnnnnnncaccattttttcaatcggaactcttaaaagaagaaaaacatatgatta |
356 |
Q |
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||||||||||||||||||||| |||||||||||| ||| | ||||||||| |||||| |||||||||| ||||||||||| ||||||| |
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| T |
46833176 |
ctctaaaaagacaccatttttttatctaaactctaaaaaga-----------caccatttt--caatcgaaactcttaaa-gaagaaaaacacatgatta |
46833261 |
T |
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| Q |
357 |
gagacacactttaaattaatagttattgaaacatagtaattgatacattagttttatgaccacatataggcttcatttataaactttgacagcaaagcat |
456 |
Q |
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||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||| |
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| T |
46833262 |
gagacac--tttaaaataatg---attgaaacatagttattgatacattagttttatgaccacatataggcttcatttataaacttttacagaaaaacat |
46833356 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 101; Significance: 9e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 152 - 399
Target Start/End: Original strand, 27540794 - 27541035
Alignment:
| Q |
152 |
ctactgaaaaataaaatctcaacgcggaaaaatcaattataaaggttattattagaacacgtgtccatgtgtctgaaacttagttcagttgcattcattt |
251 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||| | | ||||||||||| |
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|
| T |
27540794 |
ctactgaaaaataaaatctcaatgcagaaaaatcaattatgaaggttattattagaacacatgtccatgtgtttgaaacttagattatctgcattcattt |
27540893 |
T |
|
| Q |
252 |
ctaaactctaaaaagacaccatttttctatctaaactcttaaagaaatctnnnnnnncaccattttttcaatcggaactcttaaaagaagaaaaacatat |
351 |
Q |
| |
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||| || | |||||||||||||||||||||||||||||||||||| | | ||| | |||||||||| || |||| |||||||||||||| || |
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| T |
27540894 |
ataagctat-aaaagacaccatttttctatctaaactcttaaagaactataaaacgacacta-tttttcaatcaaaattctt-aaagaagaaaaacacat |
27540990 |
T |
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| Q |
352 |
gattagagacacactttaaattaatagttattgaaacatagtaattga |
399 |
Q |
| |
|
||||| ||||| ||||||||| |||| ||||||||||||||||||| |
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| T |
27540991 |
gattaaagacatactttaaat---tagtgattgaaacatagtaattga |
27541035 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 411 - 547
Target Start/End: Complemental strand, 27446050 - 27445911
Alignment:
| Q |
411 |
tatgaccacatataggcttcatttataaactttgacagcaaagcatgttca---tatataatgaaaatggtttcagctacacaaagtgacatacatgtgc |
507 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27446050 |
tatgaccacatatagatttcatttataaactttgacagcaaagcatggtcgacgtatataatgaaaatggttttagctacacaaagtgacatacatgtgc |
27445951 |
T |
|
| Q |
508 |
agaattatatatttttagagtattccttttgtgtactata |
547 |
Q |
| |
|
| |||||||| ||||||||||||||||| | ||||||||| |
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|
| T |
27445950 |
ataattatatttttttagagtattccttctttgtactata |
27445911 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 184 - 297
Target Start/End: Complemental strand, 45032240 - 45032127
Alignment:
| Q |
184 |
tcaattataaaggttattattagaacacgtgtccatgtgtctgaaacttagttcagttgcattcatttctaaactctaaaaagacaccatttttctatct |
283 |
Q |
| |
|
||||||| |||||||| |||||| |||| ||||||||||| |||||||||| | |||||||| ||||| |||||||| ||||||||| ||||| |||||| |
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|
| T |
45032240 |
tcaattacaaaggttagtattagcacacatgtccatgtgtttgaaacttagataagttgcatacatttataaactcttaaaagacacaattttactatct |
45032141 |
T |
|
| Q |
284 |
aaactcttaaagaa |
297 |
Q |
| |
|
| |||||||||||| |
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|
| T |
45032140 |
acactcttaaagaa |
45032127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 203 - 297
Target Start/End: Complemental strand, 4357297 - 4357204
Alignment:
| Q |
203 |
ttagaacacgtgtccatgtgtctgaaacttagttcagttgcattcatttctaaactctaaaaagacaccatttttctatctaaactcttaaagaa |
297 |
Q |
| |
|
||||||||| ||||||||||| | |||||||| |||| |||||||||||| ||||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
4357297 |
ttagaacacatgtccatgtgttttaaacttagatcagctgcattcatttccaaactct-taaagacacattttttatatctaaactcttaaagaa |
4357204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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